data_6RZR # _model_server_result.job_id OS0jJdSatFv0PPvDOoIyvA _model_server_result.datetime_utc '2024-11-24 18:02:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":310}' # _entry.id 6RZR # _exptl.entry_id 6RZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZR _cell.length_a 48.207 _cell.length_b 90.925 _cell.length_c 120.811 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,U 1 1 B,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 76 A HIS 77 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 A ND1 HIS 78 A HIS 79 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 A OD2 ASP 80 A ASP 81 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 A NE2 HIS 138 A HIS 139 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 A SG CYS 157 A CYS 158 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 A NE2 HIS 196 A HIS 197 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 M O72 8YF . A 8YF 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 M N4 8YF . A 8YF 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 M O31 8YF . A 8YF 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc10 B NE2 HIS 76 B HIS 77 1_555 N ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 B ND1 HIS 78 B HIS 79 1_555 N ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc12 B OD2 ASP 80 B ASP 81 1_555 O ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc13 B NE2 HIS 138 B HIS 139 1_555 N ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc14 B SG CYS 157 B CYS 158 1_555 O ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc15 B NE2 HIS 196 B HIS 197 1_555 O ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc16 N ZN ZN . B ZN 301 1_555 T O72 8YF . B 8YF 307 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.659 ? metalc ? metalc17 N ZN ZN . B ZN 301 1_555 T O72 8YF . B 8YF 307 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.484 ? metalc ? metalc18 N ZN ZN . B ZN 301 1_555 T O72 8YF . B 8YF 307 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.946 ? metalc ? metalc19 O ZN ZN . B ZN 302 1_555 T N4 8YF . B 8YF 307 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.512 ? metalc ? metalc20 O ZN ZN . B ZN 302 1_555 T N4 8YF . B 8YF 307 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.492 ? metalc ? metalc21 O ZN ZN . B ZN 302 1_555 T N4 8YF . B 8YF 307 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.066 ? metalc ? metalc22 O ZN ZN . B ZN 302 1_555 T O31 8YF . B 8YF 307 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.568 ? metalc ? metalc23 O ZN ZN . B ZN 302 1_555 T O31 8YF . B 8YF 307 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 123 n n C1 C2 EDO sing 124 n n C1 H11 EDO sing 125 n n C1 H12 EDO sing 126 n n O1 HO1 EDO sing 127 n n C2 O2 EDO sing 128 n n C2 H21 EDO sing 129 n n C2 H22 EDO sing 130 n n O2 HO2 EDO sing 131 n n # _atom_sites.entry_id 6RZR _atom_sites.fract_transf_matrix[1][1] 0.020744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 1 ZN ZN . D 2 ZN A 1 302 3 ZN ZN . E 3 EDO A 1 303 2 EDO EDO . F 3 EDO A 1 304 9 EDO EDO . G 3 EDO A 1 305 11 EDO EDO . H 3 EDO A 1 306 12 EDO EDO . I 3 EDO A 1 307 20 EDO EDO . J 3 EDO A 1 308 22 EDO EDO . K 3 EDO A 1 309 25 EDO EDO . L 3 EDO A 1 310 27 EDO EDO . M 4 8YF A 1 311 2 8YF ID2 . N 2 ZN B 1 301 2 ZN ZN . O 2 ZN B 1 302 4 ZN ZN . P 3 EDO B 1 303 1 EDO EDO . Q 3 EDO B 1 304 16 EDO EDO . R 3 EDO B 1 305 21 EDO EDO . S 3 EDO B 1 306 23 EDO EDO . T 4 8YF B 1 307 1 8YF ID2 . U 5 HOH A 1 401 158 HOH HOH . U 5 HOH A 2 402 233 HOH HOH . U 5 HOH A 3 403 76 HOH HOH . U 5 HOH A 4 404 116 HOH HOH . U 5 HOH A 5 405 55 HOH HOH . U 5 HOH A 6 406 41 HOH HOH . U 5 HOH A 7 407 219 HOH HOH . U 5 HOH A 8 408 50 HOH HOH . U 5 HOH A 9 409 109 HOH HOH . U 5 HOH A 10 410 170 HOH HOH . U 5 HOH A 11 411 28 HOH HOH . U 5 HOH A 12 412 129 HOH HOH . U 5 HOH A 13 413 118 HOH HOH . U 5 HOH A 14 414 108 HOH HOH . U 5 HOH A 15 415 98 HOH HOH . U 5 HOH A 16 416 111 HOH HOH . U 5 HOH A 17 417 95 HOH HOH . U 5 HOH A 18 418 10 HOH HOH . U 5 HOH A 19 419 143 HOH HOH . U 5 HOH A 20 420 5 HOH HOH . U 5 HOH A 21 421 220 HOH HOH . U 5 HOH A 22 422 12 HOH HOH . U 5 HOH A 23 423 106 HOH HOH . U 5 HOH A 24 424 53 HOH HOH . U 5 HOH A 25 425 96 HOH HOH . U 5 HOH A 26 426 23 HOH HOH . U 5 HOH A 27 427 222 HOH HOH . U 5 HOH A 28 428 234 HOH HOH . U 5 HOH A 29 429 8 HOH HOH . U 5 HOH A 30 430 203 HOH HOH . U 5 HOH A 31 431 119 HOH HOH . U 5 HOH A 32 432 113 HOH HOH . U 5 HOH A 33 433 112 HOH HOH . U 5 HOH A 34 434 47 HOH HOH . U 5 HOH A 35 435 149 HOH HOH . U 5 HOH A 36 436 19 HOH HOH . U 5 HOH A 37 437 26 HOH HOH . U 5 HOH A 38 438 54 HOH HOH . U 5 HOH A 39 439 80 HOH HOH . U 5 HOH A 40 440 63 HOH HOH . U 5 HOH A 41 441 2 HOH HOH . U 5 HOH A 42 442 1 HOH HOH . U 5 HOH A 43 443 197 HOH HOH . U 5 HOH A 44 444 72 HOH HOH . U 5 HOH A 45 445 24 HOH HOH . U 5 HOH A 46 446 11 HOH HOH . U 5 HOH A 47 447 115 HOH HOH . U 5 HOH A 48 448 56 HOH HOH . U 5 HOH A 49 449 73 HOH HOH . U 5 HOH A 50 450 60 HOH HOH . U 5 HOH A 51 451 14 HOH HOH . U 5 HOH A 52 452 49 HOH HOH . U 5 HOH A 53 453 6 HOH HOH . U 5 HOH A 54 454 7 HOH HOH . U 5 HOH A 55 455 164 HOH HOH . U 5 HOH A 56 456 34 HOH HOH . U 5 HOH A 57 457 123 HOH HOH . U 5 HOH A 58 458 187 HOH HOH . U 5 HOH A 59 459 57 HOH HOH . U 5 HOH A 60 460 51 HOH HOH . U 5 HOH A 61 461 217 HOH HOH . U 5 HOH A 62 462 162 HOH HOH . U 5 HOH A 63 463 16 HOH HOH . U 5 HOH A 64 464 114 HOH HOH . U 5 HOH A 65 465 4 HOH HOH . U 5 HOH A 66 466 17 HOH HOH . U 5 HOH A 67 467 105 HOH HOH . U 5 HOH A 68 468 78 HOH HOH . U 5 HOH A 69 469 133 HOH HOH . U 5 HOH A 70 470 13 HOH HOH . U 5 HOH A 71 471 102 HOH HOH . U 5 HOH A 72 472 192 HOH HOH . U 5 HOH A 73 473 166 HOH HOH . U 5 HOH A 74 474 122 HOH HOH . U 5 HOH A 75 475 85 HOH HOH . U 5 HOH A 76 476 140 HOH HOH . U 5 HOH A 77 477 150 HOH HOH . U 5 HOH A 78 478 216 HOH HOH . U 5 HOH A 79 479 67 HOH HOH . U 5 HOH A 80 480 75 HOH HOH . U 5 HOH A 81 481 48 HOH HOH . U 5 HOH A 82 482 104 HOH HOH . U 5 HOH A 83 483 27 HOH HOH . U 5 HOH A 84 484 101 HOH HOH . U 5 HOH A 85 485 205 HOH HOH . U 5 HOH A 86 486 70 HOH HOH . U 5 HOH A 87 487 124 HOH HOH . U 5 HOH A 88 488 61 HOH HOH . U 5 HOH A 89 489 154 HOH HOH . U 5 HOH A 90 490 69 HOH HOH . U 5 HOH A 91 491 20 HOH HOH . U 5 HOH A 92 492 144 HOH HOH . U 5 HOH A 93 493 221 HOH HOH . U 5 HOH A 94 494 209 HOH HOH . U 5 HOH A 95 495 177 HOH HOH . U 5 HOH A 96 496 148 HOH HOH . U 5 HOH A 97 497 146 HOH HOH . U 5 HOH A 98 498 65 HOH HOH . U 5 HOH A 99 499 79 HOH HOH . U 5 HOH A 100 500 224 HOH HOH . U 5 HOH A 101 501 191 HOH HOH . U 5 HOH A 102 502 97 HOH HOH . U 5 HOH A 103 503 135 HOH HOH . U 5 HOH A 104 504 137 HOH HOH . U 5 HOH A 105 505 59 HOH HOH . U 5 HOH A 106 506 194 HOH HOH . U 5 HOH A 107 507 174 HOH HOH . U 5 HOH A 108 508 173 HOH HOH . U 5 HOH A 109 509 172 HOH HOH . U 5 HOH A 110 510 171 HOH HOH . U 5 HOH A 111 511 90 HOH HOH . U 5 HOH A 112 512 117 HOH HOH . U 5 HOH A 113 513 136 HOH HOH . U 5 HOH A 114 514 147 HOH HOH . U 5 HOH A 115 515 138 HOH HOH . U 5 HOH A 116 516 155 HOH HOH . U 5 HOH A 117 517 215 HOH HOH . U 5 HOH A 118 518 151 HOH HOH . U 5 HOH A 119 519 200 HOH HOH . U 5 HOH A 120 520 156 HOH HOH . U 5 HOH A 121 521 125 HOH HOH . U 5 HOH A 122 522 169 HOH HOH . U 5 HOH A 123 523 64 HOH HOH . V 5 HOH B 1 401 37 HOH HOH . V 5 HOH B 2 402 82 HOH HOH . V 5 HOH B 3 403 184 HOH HOH . V 5 HOH B 4 404 38 HOH HOH . V 5 HOH B 5 405 228 HOH HOH . V 5 HOH B 6 406 139 HOH HOH . V 5 HOH B 7 407 232 HOH HOH . V 5 HOH B 8 408 35 HOH HOH . V 5 HOH B 9 409 39 HOH HOH . V 5 HOH B 10 410 30 HOH HOH . V 5 HOH B 11 411 44 HOH HOH . V 5 HOH B 12 412 199 HOH HOH . V 5 HOH B 13 413 110 HOH HOH . V 5 HOH B 14 414 71 HOH HOH . V 5 HOH B 15 415 42 HOH HOH . V 5 HOH B 16 416 52 HOH HOH . V 5 HOH B 17 417 179 HOH HOH . V 5 HOH B 18 418 142 HOH HOH . V 5 HOH B 19 419 93 HOH HOH . V 5 HOH B 20 420 89 HOH HOH . V 5 HOH B 21 421 127 HOH HOH . V 5 HOH B 22 422 83 HOH HOH . V 5 HOH B 23 423 231 HOH HOH . V 5 HOH B 24 424 161 HOH HOH . V 5 HOH B 25 425 32 HOH HOH . V 5 HOH B 26 426 3 HOH HOH . V 5 HOH B 27 427 100 HOH HOH . V 5 HOH B 28 428 58 HOH HOH . V 5 HOH B 29 429 185 HOH HOH . V 5 HOH B 30 430 152 HOH HOH . V 5 HOH B 31 431 40 HOH HOH . V 5 HOH B 32 432 74 HOH HOH . V 5 HOH B 33 433 130 HOH HOH . V 5 HOH B 34 434 196 HOH HOH . V 5 HOH B 35 435 9 HOH HOH . V 5 HOH B 36 436 229 HOH HOH . V 5 HOH B 37 437 145 HOH HOH . V 5 HOH B 38 438 36 HOH HOH . V 5 HOH B 39 439 86 HOH HOH . V 5 HOH B 40 440 25 HOH HOH . V 5 HOH B 41 441 21 HOH HOH . V 5 HOH B 42 442 15 HOH HOH . V 5 HOH B 43 443 18 HOH HOH . V 5 HOH B 44 444 22 HOH HOH . V 5 HOH B 45 445 107 HOH HOH . V 5 HOH B 46 446 29 HOH HOH . V 5 HOH B 47 447 204 HOH HOH . V 5 HOH B 48 448 46 HOH HOH . V 5 HOH B 49 449 92 HOH HOH . V 5 HOH B 50 450 31 HOH HOH . V 5 HOH B 51 451 45 HOH HOH . V 5 HOH B 52 452 43 HOH HOH . V 5 HOH B 53 453 33 HOH HOH . V 5 HOH B 54 454 120 HOH HOH . V 5 HOH B 55 455 207 HOH HOH . V 5 HOH B 56 456 202 HOH HOH . V 5 HOH B 57 457 208 HOH HOH . V 5 HOH B 58 458 81 HOH HOH . V 5 HOH B 59 459 165 HOH HOH . V 5 HOH B 60 460 175 HOH HOH . V 5 HOH B 61 461 168 HOH HOH . V 5 HOH B 62 462 227 HOH HOH . V 5 HOH B 63 463 213 HOH HOH . V 5 HOH B 64 464 126 HOH HOH . V 5 HOH B 65 465 132 HOH HOH . V 5 HOH B 66 466 91 HOH HOH . V 5 HOH B 67 467 226 HOH HOH . V 5 HOH B 68 468 201 HOH HOH . V 5 HOH B 69 469 206 HOH HOH . V 5 HOH B 70 470 218 HOH HOH . V 5 HOH B 71 471 223 HOH HOH . V 5 HOH B 72 472 99 HOH HOH . V 5 HOH B 73 473 225 HOH HOH . V 5 HOH B 74 474 62 HOH HOH . V 5 HOH B 75 475 121 HOH HOH . V 5 HOH B 76 476 87 HOH HOH . V 5 HOH B 77 477 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 -28.143 9.982 13.485 1 65.33 ? C1 EDO 310 A 1 HETATM 2 O O1 EDO . . . L 3 -27.798 8.823 12.771 1 80.84 ? O1 EDO 310 A 1 HETATM 3 C C2 EDO . . . L 3 -27.825 11.245 12.793 1 70 ? C2 EDO 310 A 1 HETATM 4 O O2 EDO . . . L 3 -28.776 12.251 13.053 1 78.5 ? O2 EDO 310 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #