data_6S0A # _model_server_result.job_id YHYZNQBy7cicIps-0u4pww _model_server_result.datetime_utc '2024-12-16 13:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":504}' # _entry.id 6S0A # _exptl.entry_id 6S0A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S0A _cell.length_a 114.753 _cell.length_b 114.753 _cell.length_c 232.26 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 BGC FUC C1 O1 . O3 HO3 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C FUC 1 C 1 FUC A 503 FUC 3 n C BGC 2 C 2 BGC A 504 BGC 4 n D NAG 1 D 1 NAG A 510 NAG 4 n D NAG 2 D 2 NAG A 511 NAG 3 n E FUC 1 E 1 FUC B 201 FUC 3 n E BGC 2 E 2 BGC B 202 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 269 1_555 A SG CYS 53 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf2 A SG CYS 20 A CYS 273 1_555 A SG CYS 59 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 31 A CYS 284 1_555 A SG CYS 43 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 74 A CYS 327 1_555 A SG CYS 117 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 A SG CYS 84 A CYS 337 1_555 A SG CYS 123 A CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 97 A CYS 350 1_555 A SG CYS 107 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf7 A SG CYS 138 A CYS 391 1_555 A SG CYS 202 A CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 A SG CYS 142 A CYS 395 1_555 A SG CYS 208 A CYS 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf9 A SG CYS 154 A CYS 407 1_555 A SG CYS 186 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf10 B SG CYS 7 B CYS 32 1_555 B SG CYS 31 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf11 B SG CYS 18 B CYS 43 1_555 B SG CYS 47 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf12 B SG CYS 32 B CYS 57 1_555 B SG CYS 50 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf13 B SG CYS 64 B CYS 89 1_555 B SG CYS 102 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf14 B SG CYS 68 B CYS 93 1_555 B SG CYS 108 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf15 B SG CYS 79 B CYS 104 1_555 B SG CYS 86 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 B SG CYS 107 B CYS 132 1_555 B SG CYS 145 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf17 B SG CYS 123 B CYS 148 1_555 B SG CYS 159 B CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf18 B SG CYS 138 B CYS 163 1_555 B SG CYS 149 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A CD1 TRP 7 A TRP 260 1_555 H C1 MAN . A MAN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? covale ? covale2 A CD1 TRP 10 A TRP 263 1_555 I C1 MAN . A MAN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale3 A OG1 THR 19 A THR 272 1_555 C C1 FUC . C FUC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 A CD1 TRP 68 A TRP 321 1_555 G C1 MAN . A MAN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? covale ? covale5 A CD1 TRP 71 A TRP 324 1_555 F C1 MAN . A MAN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale6 A CD1 TRP 129 A TRP 382 1_555 J C1 MAN . A MAN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale7 A CD1 TRP 132 A TRP 385 1_555 K C1 MAN . A MAN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale8 A CD1 TRP 135 A TRP 388 1_555 L C1 MAN . A MAN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale9 A ND2 ASN 175 A ASN 428 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale10 B CD1 TRP 58 B TRP 83 1_555 M C1 MAN . B MAN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? covale ? covale11 B OG1 THR 67 B THR 92 1_555 E C1 FUC . E FUC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale12 B CD1 TRP 114 B TRP 139 1_555 N C1 MAN . B MAN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale13 B CD1 TRP 117 B TRP 142 1_555 O C1 MAN . B MAN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale14 B OG1 THR 126 B THR 151 1_555 P C1 FUC . B FUC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale15 C O3 FUC . C FUC 1 1_555 C C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale16 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 E O3 FUC . E FUC 1 1_555 E C1 BGC . E BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 265 n n C1 O1 MAN sing 266 n n C1 O5 MAN sing 267 n n C1 H1 MAN sing 268 n n C2 C3 MAN sing 269 n n C2 O2 MAN sing 270 n n C2 H2 MAN sing 271 n n C3 C4 MAN sing 272 n n C3 O3 MAN sing 273 n n C3 H3 MAN sing 274 n n C4 C5 MAN sing 275 n n C4 O4 MAN sing 276 n n C4 H4 MAN sing 277 n n C5 C6 MAN sing 278 n n C5 O5 MAN sing 279 n n C5 H5 MAN sing 280 n n C6 O6 MAN sing 281 n n C6 H61 MAN sing 282 n n C6 H62 MAN sing 283 n n O1 HO1 MAN sing 284 n n O2 HO2 MAN sing 285 n n O3 HO3 MAN sing 286 n n O4 HO4 MAN sing 287 n n O6 HO6 MAN sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6S0A _atom_sites.fract_transf_matrix[1][1] 0.008714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 MAN A 1 501 506 MAN MAN . G 5 MAN A 1 502 505 MAN MAN . H 5 MAN A 1 503 500 MAN MAN . I 5 MAN A 1 504 501 MAN MAN . J 5 MAN A 1 505 507 MAN MAN . K 5 MAN A 1 506 508 MAN MAN . L 5 MAN A 1 507 509 MAN MAN . M 5 MAN B 1 201 200 MAN MAN . N 5 MAN B 1 202 203 MAN MAN . O 5 MAN B 1 203 204 MAN MAN . P 6 FUC B 1 204 205 FUC FUC . Q 7 HOH A 1 601 5 HOH HOH . Q 7 HOH A 2 602 1 HOH HOH . Q 7 HOH A 3 603 11 HOH HOH . Q 7 HOH A 4 604 3 HOH HOH . Q 7 HOH A 5 605 10 HOH HOH . Q 7 HOH A 6 606 4 HOH HOH . Q 7 HOH A 7 607 2 HOH HOH . Q 7 HOH A 8 608 8 HOH HOH . Q 7 HOH A 9 609 9 HOH HOH . R 7 HOH B 1 301 6 HOH HOH . R 7 HOH B 2 302 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . I 5 13.7 -42.268 -53.56 1 32.76 ? C1 MAN 504 A 1 HETATM 2 C C2 MAN . . . I 5 14.978 -41.854 -54.278 1 33.48 ? C2 MAN 504 A 1 HETATM 3 C C3 MAN . . . I 5 14.756 -40.741 -55.305 1 35.75 ? C3 MAN 504 A 1 HETATM 4 C C4 MAN . . . I 5 14 -39.579 -54.674 1 37.2 ? C4 MAN 504 A 1 HETATM 5 C C5 MAN . . . I 5 12.699 -40.033 -54.057 1 36.14 ? C5 MAN 504 A 1 HETATM 6 C C6 MAN . . . I 5 11.634 -40.495 -55.015 1 36.32 ? C6 MAN 504 A 1 HETATM 7 O O2 MAN . . . I 5 15.55 -42.971 -54.948 1 33.31 ? O2 MAN 504 A 1 HETATM 8 O O3 MAN . . . I 5 14.111 -41.162 -56.517 1 35.55 ? O3 MAN 504 A 1 HETATM 9 O O4 MAN . . . I 5 14.793 -39.029 -53.608 1 38.43 ? O4 MAN 504 A 1 HETATM 10 O O5 MAN . . . I 5 12.937 -41.119 -53.176 1 34.35 ? O5 MAN 504 A 1 HETATM 11 O O6 MAN . . . I 5 10.613 -40.972 -54.15 1 36.11 ? O6 MAN 504 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 107 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #