data_6S0H # _model_server_result.job_id y68SvV2EooKFYBju4BSZCQ _model_server_result.datetime_utc '2024-11-07 12:55:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":310}' # _entry.id 6S0H # _exptl.entry_id 6S0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.52 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R},3~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-3-methyl-4-[(3~{S},5~{S})-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl]sulfanyl-2,3-dihydro-1~{H}-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.72 _cell.angle_gamma 90 _cell.entry_id 6S0H _cell.length_a 61.43 _cell.length_b 72.318 _cell.length_c 62.933 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,Q 1 1 B,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 76 A HIS 77 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A ND1 HIS 78 A HIS 79 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 A OD2 ASP 80 A ASP 81 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 A NE2 HIS 138 A HIS 139 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc5 A SG CYS 157 A CYS 158 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 A NE2 HIS 196 A HIS 197 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 L O4 KQ8 . A KQ8 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 L O KQ8 . A KQ8 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 L O3 KQ8 . A KQ8 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc10 B NE2 HIS 76 B HIS 77 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 B ND1 HIS 78 B HIS 79 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc12 B OD2 ASP 80 B ASP 81 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc13 B NE2 HIS 138 B HIS 139 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc14 B SG CYS 157 B CYS 158 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc15 B NE2 HIS 196 B HIS 197 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc16 N ZN ZN . B ZN 402 1_555 P O3 KQ8 . B KQ8 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc17 O ZN ZN . B ZN 403 1_555 P O KQ8 . B KQ8 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'C15 H26 N4 O7 S2' _chem_comp.formula_weight 438.52 _chem_comp.id KQ8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R},3~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-3-methyl-4-[(3~{S},5~{S})-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl]sulfanyl-2,3-dihydro-1~{H}-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C12 KQ8 sing 182 n n O4 C12 KQ8 doub 183 n n C12 C9 KQ8 sing 184 n n C11 C10 KQ8 sing 185 n n C9 C10 KQ8 sing 186 n n C9 C8 KQ8 sing 187 n n C10 O2 KQ8 sing 188 n n C8 N3 KQ8 sing 189 n n C8 C13 KQ8 sing 190 n n N3 C6 KQ8 sing 191 n n C13 C14 KQ8 sing 192 n n C13 C5 KQ8 sing 193 n n C6 C7 KQ8 sing 194 n n C6 C5 KQ8 doub 195 n n O C7 KQ8 sing 196 n n C7 O1 KQ8 doub 197 n n C5 S1 KQ8 sing 198 n n S1 C4 KQ8 sing 199 n n C2 C4 KQ8 sing 200 n n C2 C1 KQ8 sing 201 n n C4 C3 KQ8 sing 202 n n C1 C KQ8 sing 203 n n C1 N2 KQ8 sing 204 n n C3 N2 KQ8 sing 205 n n C N1 KQ8 sing 206 n n N1 S KQ8 sing 207 n n O5 S KQ8 doub 208 n n S O6 KQ8 doub 209 n n S N KQ8 sing 210 n n C1 H KQ8 sing 211 n n C2 H10 KQ8 sing 212 n n C2 H11 KQ8 sing 213 n n C3 H14 KQ8 sing 214 n n C3 H13 KQ8 sing 215 n n C4 H1 KQ8 sing 216 n n C9 H2 KQ8 sing 217 n n C11 H19 KQ8 sing 218 n n C11 H20 KQ8 sing 219 n n C11 H18 KQ8 sing 220 n n C14 H23 KQ8 sing 221 n n C14 H24 KQ8 sing 222 n n C14 H25 KQ8 sing 223 n n C13 H4 KQ8 sing 224 n n N H6 KQ8 sing 225 n n N H5 KQ8 sing 226 n n C H8 KQ8 sing 227 n n C H9 KQ8 sing 228 n n O H15 KQ8 sing 229 n n C10 H3 KQ8 sing 230 n n C8 H17 KQ8 sing 231 n n N1 H7 KQ8 sing 232 n n N2 H26 KQ8 sing 233 n n N3 H16 KQ8 sing 234 n n O2 H21 KQ8 sing 235 n n O3 H22 KQ8 sing 236 n n # _atom_sites.entry_id 6S0H _atom_sites.fract_transf_matrix[1][1] 0.016279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006485 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 3 ZN ZN . D 2 ZN A 1 302 4 ZN ZN . E 3 EDO A 1 303 2 EDO EDO . F 3 EDO A 1 304 3 EDO EDO . G 3 EDO A 1 305 4 EDO EDO . H 3 EDO A 1 306 5 EDO EDO . I 3 EDO A 1 307 6 EDO EDO . J 3 EDO A 1 308 8 EDO EDO . K 3 EDO A 1 309 9 EDO EDO . L 4 KQ8 A 1 310 2 KQ8 DD2 . M 3 EDO B 1 401 401 EDO EDO . N 2 ZN B 1 402 1 ZN ZN . O 2 ZN B 1 403 2 ZN ZN . P 4 KQ8 B 1 404 1 KQ8 DD2 . Q 5 HOH A 1 401 24 HOH HOH . Q 5 HOH A 2 402 3 HOH HOH . Q 5 HOH A 3 403 20 HOH HOH . Q 5 HOH A 4 404 27 HOH HOH . Q 5 HOH A 5 405 4 HOH HOH . Q 5 HOH A 6 406 6 HOH HOH . Q 5 HOH A 7 407 28 HOH HOH . Q 5 HOH A 8 408 23 HOH HOH . Q 5 HOH A 9 409 25 HOH HOH . Q 5 HOH A 10 410 10 HOH HOH . Q 5 HOH A 11 411 7 HOH HOH . Q 5 HOH A 12 412 2 HOH HOH . Q 5 HOH A 13 413 1 HOH HOH . Q 5 HOH A 14 414 30 HOH HOH . R 5 HOH B 1 501 21 HOH HOH . R 5 HOH B 2 502 19 HOH HOH . R 5 HOH B 3 503 14 HOH HOH . R 5 HOH B 4 504 32 HOH HOH . R 5 HOH B 5 505 26 HOH HOH . R 5 HOH B 6 506 29 HOH HOH . R 5 HOH B 7 507 22 HOH HOH . R 5 HOH B 8 508 12 HOH HOH . R 5 HOH B 9 509 11 HOH HOH . R 5 HOH B 10 510 31 HOH HOH . R 5 HOH B 11 511 5 HOH HOH . R 5 HOH B 12 512 15 HOH HOH . R 5 HOH B 13 513 13 HOH HOH . R 5 HOH B 14 514 8 HOH HOH . R 5 HOH B 15 515 18 HOH HOH . R 5 HOH B 16 516 16 HOH HOH . R 5 HOH B 17 517 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KQ8 . . . L 4 0.224 13.46 15.585 1 93.93 ? C1 KQ8 310 A 1 HETATM 2 C C2 KQ8 . . . L 4 0.293 14.923 16.036 1 85.48 ? C2 KQ8 310 A 1 HETATM 3 C C3 KQ8 . . . L 4 2.54 14.106 15.661 1 85.98 ? C3 KQ8 310 A 1 HETATM 4 C C4 KQ8 . . . L 4 1.711 14.996 16.601 1 83.37 ? C4 KQ8 310 A 1 HETATM 5 C C5 KQ8 . . . L 4 3.146 17.024 18.088 1 86.8 ? C5 KQ8 310 A 1 HETATM 6 C C6 KQ8 . . . L 4 4.326 16.597 18.662 1 83.45 ? C6 KQ8 310 A 1 HETATM 7 C C9 KQ8 . . . L 4 4.03 19.011 21.223 1 90.63 ? C9 KQ8 310 A 1 HETATM 8 C C11 KQ8 . . . L 4 1.544 18.718 21.607 1 90.28 ? C11 KQ8 310 A 1 HETATM 9 C C14 KQ8 . . . L 4 1.888 19.208 18.261 1 90.3 ? C14 KQ8 310 A 1 HETATM 10 C C13 KQ8 . . . L 4 2.62 18.101 19.008 1 86.66 ? C13 KQ8 310 A 1 HETATM 11 C C12 KQ8 . . . L 4 4.757 17.908 21.931 1 93.21 ? C12 KQ8 310 A 1 HETATM 12 N N KQ8 . . . L 4 -4.566 13.228 15.914 1 130.59 ? N KQ8 310 A 1 HETATM 13 C C KQ8 . . . L 4 -0.901 13.142 14.58 1 106.4 ? C KQ8 310 A 1 HETATM 14 O O KQ8 . . . L 4 4.672 14.358 19.076 1 78.97 ? O KQ8 310 A 1 HETATM 15 C C10 KQ8 . . . L 4 2.803 19.44 22.026 1 87.9 ? C10 KQ8 310 A 1 HETATM 16 C C7 KQ8 . . . L 4 5.04 15.341 18.484 1 77.4 ? C7 KQ8 310 A 1 HETATM 17 C C8 KQ8 . . . L 4 3.905 18.568 19.735 1 90.36 ? C8 KQ8 310 A 1 HETATM 18 N N1 KQ8 . . . L 4 -2.094 12.656 15.294 1 124.8 ? N1 KQ8 310 A 1 HETATM 19 N N2 KQ8 . . . L 4 1.542 13.304 14.955 1 90.02 ? N2 KQ8 310 A 1 HETATM 20 N N3 KQ8 . . . L 4 4.751 17.406 19.606 1 85.07 ? N3 KQ8 310 A 1 HETATM 21 O O1 KQ8 . . . L 4 6.135 15.383 17.785 1 65.91 ? O1 KQ8 310 A 1 HETATM 22 O O2 KQ8 . . . L 4 3.04 19.233 23.42 1 78.61 ? O2 KQ8 310 A 1 HETATM 23 O O3 KQ8 . . . L 4 4.794 16.757 21.556 1 90.12 ? O3 KQ8 310 A 1 HETATM 24 O O4 KQ8 . . . L 4 5.366 18.334 22.951 1 109.71 ? O4 KQ8 310 A 1 HETATM 25 O O5 KQ8 . . . L 4 -2.836 14.938 15.859 1 148.85 ? O5 KQ8 310 A 1 HETATM 26 O O6 KQ8 . . . L 4 -2.815 13.193 17.605 1 140.93 ? O6 KQ8 310 A 1 HETATM 27 S S KQ8 . . . L 4 -3.029 13.586 16.254 1 141.02 ? S KQ8 310 A 1 HETATM 28 S S1 KQ8 . . . L 4 2.404 16.677 16.531 1 74.13 ? S1 KQ8 310 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #