data_6S0Q # _model_server_result.job_id EuUT6SRf57nzTO63cUSQIg _model_server_result.datetime_utc '2024-11-13 03:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1211}' # _entry.id 6S0Q # _exptl.entry_id 6S0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S0Q _cell.length_a 40.34 _cell.length_b 180.66 _cell.length_c 143.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 429 n n C10 C9 OLC doub 430 n n C10 C11 OLC sing 431 n n C9 C8 OLC sing 432 n n C17 C16 OLC sing 433 z n C11 C12 OLC sing 434 n n C8 C7 OLC sing 435 n n C24 C22 OLC sing 436 n n C24 O25 OLC sing 437 n n C16 C15 OLC sing 438 n n C12 C13 OLC sing 439 n n C7 C6 OLC sing 440 n n C15 C14 OLC sing 441 n n C13 C14 OLC sing 442 n n C6 C5 OLC sing 443 n n C5 C4 OLC sing 444 n n C4 C3 OLC sing 445 n n C3 C2 OLC sing 446 n n C2 C1 OLC sing 447 n n C21 C22 OLC sing 448 n n C21 O20 OLC sing 449 n n C1 O19 OLC doub 450 n n C1 O20 OLC sing 451 n n C22 O23 OLC sing 452 n n C18 H18 OLC sing 453 n n C18 H18A OLC sing 454 n n C18 H18B OLC sing 455 n n C10 H10 OLC sing 456 n n C9 H9 OLC sing 457 n n C17 H17 OLC sing 458 n n C17 H17A OLC sing 459 n n C11 H11 OLC sing 460 n n C11 H11A OLC sing 461 n n C8 H8 OLC sing 462 n n C8 H8A OLC sing 463 n n C24 H24 OLC sing 464 n n C24 H24A OLC sing 465 n n C16 H16 OLC sing 466 n n C16 H16A OLC sing 467 n n C12 H12 OLC sing 468 n n C12 H12A OLC sing 469 n n C7 H7 OLC sing 470 n n C7 H7A OLC sing 471 n n C15 H15 OLC sing 472 n n C15 H15A OLC sing 473 n n C13 H13 OLC sing 474 n n C13 H13A OLC sing 475 n n C6 H6 OLC sing 476 n n C6 H6A OLC sing 477 n n C14 H14 OLC sing 478 n n C14 H14A OLC sing 479 n n C5 H5 OLC sing 480 n n C5 H5A OLC sing 481 n n C4 H4 OLC sing 482 n n C4 H4A OLC sing 483 n n C3 H3 OLC sing 484 n n C3 H3A OLC sing 485 n n C2 H2 OLC sing 486 n n C2 H2A OLC sing 487 n n C21 H21 OLC sing 488 n n C21 H21A OLC sing 489 n n C22 H22 OLC sing 490 n n O25 HO25 OLC sing 491 n n O23 HO23 OLC sing 492 n n # _atom_sites.entry_id 6S0Q _atom_sites.fract_transf_matrix[1][1] 0.024789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1202 ZMA ZMA . C 3 OLA A 1 1202 1203 OLA OLA . D 3 OLA A 1 1203 1204 OLA OLA . E 3 OLA A 1 1204 1205 OLA OLA . F 3 OLA A 1 1205 1206 OLA OLA . G 3 OLA A 1 1206 1211 OLA OLA . H 3 OLA A 1 1207 1212 OLA OLA . I 3 OLA A 1 1208 1213 OLA OLA . J 4 OLB A 1 1209 1218 OLB OLB . K 4 OLB A 1 1210 1219 OLB OLB . L 5 OLC A 1 1211 1220 OLC OLC . M 5 OLC A 1 1212 1221 OLC OLC . N 6 CLR A 1 1213 1222 CLR CLR . O 6 CLR A 1 1214 1223 CLR CLR . P 6 CLR A 1 1215 1224 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . L 5 21.209 -5.574 125.558 1 114.49 ? C18 OLC 1211 A 1 HETATM 2 C C10 OLC . . . L 5 18.622 3.002 127.735 1 97.68 ? C10 OLC 1211 A 1 HETATM 3 C C9 OLC . . . L 5 17.985 4.133 127.532 1 92.94 ? C9 OLC 1211 A 1 HETATM 4 C C17 OLC . . . L 5 21.106 -4.779 126.863 1 119.12 ? C17 OLC 1211 A 1 HETATM 5 C C11 OLC . . . L 5 19.271 2.312 126.546 1 95.78 ? C11 OLC 1211 A 1 HETATM 6 C C8 OLC . . . L 5 17.939 4.658 126.116 1 95.22 ? C8 OLC 1211 A 1 HETATM 7 C C24 OLC . . . L 5 20.101 17.442 123.33 1 123.14 ? C24 OLC 1211 A 1 HETATM 8 C C16 OLC . . . L 5 21.668 -3.375 126.644 1 113.65 ? C16 OLC 1211 A 1 HETATM 9 C C12 OLC . . . L 5 19.01 0.817 126.695 1 112.84 ? C12 OLC 1211 A 1 HETATM 10 C C7 OLC . . . L 5 17.3 6.034 126.147 1 99.52 ? C7 OLC 1211 A 1 HETATM 11 C C15 OLC . . . L 5 20.877 -2.341 127.452 1 119.83 ? C15 OLC 1211 A 1 HETATM 12 C C13 OLC . . . L 5 20.182 0.102 127.368 1 117.69 ? C13 OLC 1211 A 1 HETATM 13 C C6 OLC . . . L 5 18.419 7.026 125.877 1 97.03 ? C6 OLC 1211 A 1 HETATM 14 C C14 OLC . . . L 5 20.515 -1.151 126.551 1 118.97 ? C14 OLC 1211 A 1 HETATM 15 C C5 OLC . . . L 5 17.872 8.219 125.103 1 94.9 ? C5 OLC 1211 A 1 HETATM 16 C C4 OLC . . . L 5 18.144 9.483 125.927 1 99.42 ? C4 OLC 1211 A 1 HETATM 17 C C3 OLC . . . L 5 18.824 10.516 125.035 1 96.53 ? C3 OLC 1211 A 1 HETATM 18 C C2 OLC . . . L 5 18.812 11.914 125.659 1 102.98 ? C2 OLC 1211 A 1 HETATM 19 C C21 OLC . . . L 5 19.993 15.036 123.98 1 100.45 ? C21 OLC 1211 A 1 HETATM 20 C C1 OLC . . . L 5 19.418 12.906 124.653 1 108.09 ? C1 OLC 1211 A 1 HETATM 21 C C22 OLC . . . L 5 19.788 16.469 124.478 1 124.66 ? C22 OLC 1211 A 1 HETATM 22 O O19 OLC . . . L 5 19.486 12.625 123.5 1 106.91 ? O19 OLC 1211 A 1 HETATM 23 O O25 OLC . . . L 5 20.18 16.734 122.118 1 120.03 ? O25 OLC 1211 A 1 HETATM 24 O O23 OLC . . . L 5 18.473 16.661 124.973 1 116.14 ? O23 OLC 1211 A 1 HETATM 25 O O20 OLC . . . L 5 19.9 14.153 125.057 1 104.38 ? O20 OLC 1211 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #