data_6S0V # _model_server_result.job_id 8Dc-hmfc6JHqM0tsZk_6Vg _model_server_result.datetime_utc '2024-11-13 21:00:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":301}' # _entry.id 6S0V # _exptl.entry_id 6S0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.68 _cell.angle_gamma 90 _cell.entry_id 6S0V _cell.length_a 50.467 _cell.length_b 185.25 _cell.length_c 110.46 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,J,K,KA 1 1 B,L,M,N,O,LA 2 1 C,P,Q,R,S,MA 3 1 D,T,U,V,W,X,Y,NA 4 1 E,Z,AA,BA,CA,DA,OA 5 1 F,EA,FA,GA,HA,IA,JA,PA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 L N N ? 2 P N N ? 2 T N N ? 2 Z N N ? 2 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 135 A HIS 132 1_555 G NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A OD1 ASP 137 A ASP 134 1_555 G NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 A NE2 HIS 222 A HIS 219 1_555 G NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 G NI NI . A NI 301 1_555 KA O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 G NI NI . A NI 301 1_555 KA O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc6 G NI NI . A NI 301 1_555 KA O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 B NE2 HIS 135 B HIS 132 1_555 L NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 B OD1 ASP 137 B ASP 134 1_555 L NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc9 B NE2 HIS 222 B HIS 219 1_555 L NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc10 L NI NI . B NI 301 1_555 LA O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc11 L NI NI . B NI 301 1_555 LA O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc12 L NI NI . B NI 301 1_555 LA O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc13 C NE2 HIS 135 C HIS 132 1_555 P NI NI . C NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc14 C OD1 ASP 137 C ASP 134 1_555 P NI NI . C NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc15 C NE2 HIS 222 C HIS 219 1_555 P NI NI . C NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc16 P NI NI . C NI 301 1_555 MA O HOH . C HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc17 P NI NI . C NI 301 1_555 MA O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc18 P NI NI . C NI 301 1_555 MA O HOH . C HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc19 D NE2 HIS 135 D HIS 132 1_555 T NI NI . D NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc20 D OD1 ASP 137 D ASP 134 1_555 T NI NI . D NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc21 D NE2 HIS 222 D HIS 219 1_555 T NI NI . D NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc22 T NI NI . D NI 301 1_555 NA O HOH . D HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc23 T NI NI . D NI 301 1_555 NA O HOH . D HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc24 T NI NI . D NI 301 1_555 NA O HOH . D HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc25 E NE2 HIS 135 E HIS 132 1_555 Z NI NI . E NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc26 E OD1 ASP 137 E ASP 134 1_555 Z NI NI . E NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc27 E NE2 HIS 222 E HIS 219 1_555 Z NI NI . E NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc28 Z NI NI . E NI 301 1_555 OA O HOH . E HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc29 Z NI NI . E NI 301 1_555 OA O HOH . E HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc30 Z NI NI . E NI 301 1_555 OA O HOH . E HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc31 F NE2 HIS 135 F HIS 132 1_555 EA NI NI . F NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc32 F OD1 ASP 137 F ASP 134 1_555 EA NI NI . F NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc33 F NE2 HIS 222 F HIS 219 1_555 EA NI NI . F NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc34 EA NI NI . F NI 301 1_555 PA O HOH . F HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc35 EA NI NI . F NI 301 1_555 PA O HOH . F HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc36 EA NI NI . F NI 301 1_555 PA O HOH . F HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S0V _atom_sites.fract_transf_matrix[1][1] 0.019815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001623 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NI A 1 301 301 NI NI . H 3 SO4 A 1 302 302 SO4 SO4 . I 3 SO4 A 1 303 303 SO4 SO4 . J 3 SO4 A 1 304 304 SO4 SO4 . K 4 XXX A 1 305 10 XXX XXX . L 2 NI B 1 301 302 NI NI . M 3 SO4 B 1 302 303 SO4 SO4 . N 3 SO4 B 1 303 304 SO4 SO4 . O 4 XXX B 1 304 11 XXX XXX . P 2 NI C 1 301 301 NI NI . Q 3 SO4 C 1 302 302 SO4 SO4 . R 3 SO4 C 1 303 303 SO4 SO4 . S 4 XXX C 1 304 4 XXX XXX . T 2 NI D 1 301 301 NI NI . U 3 SO4 D 1 302 302 SO4 SO4 . V 3 SO4 D 1 303 303 SO4 SO4 . W 3 SO4 D 1 304 304 SO4 SO4 . X 3 SO4 D 1 305 305 SO4 SO4 . Y 4 XXX D 1 306 6 XXX XXX . Z 2 NI E 1 301 301 NI NI . AA 3 SO4 E 1 302 302 SO4 SO4 . BA 3 SO4 E 1 303 303 SO4 SO4 . CA 3 SO4 E 1 304 304 SO4 SO4 . DA 4 XXX E 1 305 8 XXX XXX . EA 2 NI F 1 301 304 NI NI . FA 3 SO4 F 1 302 305 SO4 SO4 . GA 3 SO4 F 1 303 306 SO4 SO4 . HA 3 SO4 F 1 304 308 SO4 SO4 . IA 3 SO4 F 1 305 309 SO4 SO4 . JA 4 XXX F 1 306 2 XXX XXX . KA 5 HOH A 1 401 444 HOH HOH . KA 5 HOH A 2 402 39 HOH HOH . KA 5 HOH A 3 403 9 HOH HOH . KA 5 HOH A 4 404 8 HOH HOH . KA 5 HOH A 5 405 498 HOH HOH . KA 5 HOH A 6 406 467 HOH HOH . KA 5 HOH A 7 407 445 HOH HOH . KA 5 HOH A 8 408 523 HOH HOH . KA 5 HOH A 9 409 559 HOH HOH . KA 5 HOH A 10 410 597 HOH HOH . KA 5 HOH A 11 411 563 HOH HOH . KA 5 HOH A 12 412 553 HOH HOH . KA 5 HOH A 13 413 508 HOH HOH . KA 5 HOH A 14 414 515 HOH HOH . KA 5 HOH A 15 415 545 HOH HOH . KA 5 HOH A 16 416 549 HOH HOH . KA 5 HOH A 17 417 21 HOH HOH . KA 5 HOH A 18 418 537 HOH HOH . LA 5 HOH B 1 401 530 HOH HOH . LA 5 HOH B 2 402 507 HOH HOH . LA 5 HOH B 3 403 431 HOH HOH . LA 5 HOH B 4 404 504 HOH HOH . LA 5 HOH B 5 405 10 HOH HOH . LA 5 HOH B 6 406 34 HOH HOH . LA 5 HOH B 7 407 553 HOH HOH . LA 5 HOH B 8 408 479 HOH HOH . LA 5 HOH B 9 409 12 HOH HOH . LA 5 HOH B 10 410 562 HOH HOH . LA 5 HOH B 11 411 464 HOH HOH . LA 5 HOH B 12 412 434 HOH HOH . LA 5 HOH B 13 413 499 HOH HOH . LA 5 HOH B 14 414 433 HOH HOH . LA 5 HOH B 15 415 474 HOH HOH . LA 5 HOH B 16 416 18 HOH HOH . LA 5 HOH B 17 417 632 HOH HOH . LA 5 HOH B 18 418 559 HOH HOH . LA 5 HOH B 19 419 35 HOH HOH . LA 5 HOH B 20 420 625 HOH HOH . LA 5 HOH B 21 421 618 HOH HOH . LA 5 HOH B 22 422 561 HOH HOH . LA 5 HOH B 23 423 628 HOH HOH . LA 5 HOH B 24 424 548 HOH HOH . LA 5 HOH B 25 425 417 HOH HOH . LA 5 HOH B 26 426 648 HOH HOH . LA 5 HOH B 27 427 433 HOH HOH . LA 5 HOH B 28 428 635 HOH HOH . LA 5 HOH B 29 429 484 HOH HOH . LA 5 HOH B 30 430 655 HOH HOH . LA 5 HOH B 31 431 538 HOH HOH . LA 5 HOH B 32 432 749 HOH HOH . LA 5 HOH B 33 433 692 HOH HOH . LA 5 HOH B 34 434 466 HOH HOH . LA 5 HOH B 35 435 601 HOH HOH . LA 5 HOH B 36 436 728 HOH HOH . LA 5 HOH B 37 437 754 HOH HOH . LA 5 HOH B 38 438 732 HOH HOH . MA 5 HOH C 1 401 445 HOH HOH . MA 5 HOH C 2 402 505 HOH HOH . MA 5 HOH C 3 403 450 HOH HOH . MA 5 HOH C 4 404 503 HOH HOH . MA 5 HOH C 5 405 40 HOH HOH . MA 5 HOH C 6 406 564 HOH HOH . MA 5 HOH C 7 407 453 HOH HOH . MA 5 HOH C 8 408 549 HOH HOH . MA 5 HOH C 9 409 487 HOH HOH . MA 5 HOH C 10 410 32 HOH HOH . MA 5 HOH C 11 411 455 HOH HOH . MA 5 HOH C 12 412 33 HOH HOH . MA 5 HOH C 13 413 409 HOH HOH . MA 5 HOH C 14 414 492 HOH HOH . MA 5 HOH C 15 415 528 HOH HOH . MA 5 HOH C 16 416 467 HOH HOH . MA 5 HOH C 17 417 37 HOH HOH . MA 5 HOH C 18 418 506 HOH HOH . MA 5 HOH C 19 419 36 HOH HOH . MA 5 HOH C 20 420 597 HOH HOH . MA 5 HOH C 21 421 584 HOH HOH . MA 5 HOH C 22 422 421 HOH HOH . MA 5 HOH C 23 423 560 HOH HOH . MA 5 HOH C 24 424 496 HOH HOH . MA 5 HOH C 25 425 582 HOH HOH . MA 5 HOH C 26 426 439 HOH HOH . MA 5 HOH C 27 427 41 HOH HOH . MA 5 HOH C 28 428 471 HOH HOH . NA 5 HOH D 1 401 468 HOH HOH . NA 5 HOH D 2 402 619 HOH HOH . NA 5 HOH D 3 403 561 HOH HOH . NA 5 HOH D 4 404 485 HOH HOH . NA 5 HOH D 5 405 610 HOH HOH . NA 5 HOH D 6 406 601 HOH HOH . NA 5 HOH D 7 407 487 HOH HOH . NA 5 HOH D 8 408 403 HOH HOH . NA 5 HOH D 9 409 558 HOH HOH . NA 5 HOH D 10 410 23 HOH HOH . NA 5 HOH D 11 411 507 HOH HOH . NA 5 HOH D 12 412 432 HOH HOH . NA 5 HOH D 13 413 495 HOH HOH . NA 5 HOH D 14 414 493 HOH HOH . NA 5 HOH D 15 415 568 HOH HOH . NA 5 HOH D 16 416 462 HOH HOH . NA 5 HOH D 17 417 581 HOH HOH . NA 5 HOH D 18 418 560 HOH HOH . NA 5 HOH D 19 419 28 HOH HOH . NA 5 HOH D 20 420 611 HOH HOH . NA 5 HOH D 21 421 7 HOH HOH . NA 5 HOH D 22 422 686 HOH HOH . NA 5 HOH D 23 423 621 HOH HOH . NA 5 HOH D 24 424 494 HOH HOH . NA 5 HOH D 25 425 564 HOH HOH . NA 5 HOH D 26 426 623 HOH HOH . NA 5 HOH D 27 427 599 HOH HOH . NA 5 HOH D 28 428 546 HOH HOH . NA 5 HOH D 29 429 625 HOH HOH . OA 5 HOH E 1 401 492 HOH HOH . OA 5 HOH E 2 402 438 HOH HOH . OA 5 HOH E 3 403 31 HOH HOH . OA 5 HOH E 4 404 430 HOH HOH . OA 5 HOH E 5 405 428 HOH HOH . OA 5 HOH E 6 406 521 HOH HOH . OA 5 HOH E 7 407 590 HOH HOH . OA 5 HOH E 8 408 516 HOH HOH . OA 5 HOH E 9 409 17 HOH HOH . OA 5 HOH E 10 410 548 HOH HOH . OA 5 HOH E 11 411 445 HOH HOH . OA 5 HOH E 12 412 29 HOH HOH . OA 5 HOH E 13 413 22 HOH HOH . OA 5 HOH E 14 414 531 HOH HOH . OA 5 HOH E 15 415 569 HOH HOH . OA 5 HOH E 16 416 491 HOH HOH . OA 5 HOH E 17 417 513 HOH HOH . PA 5 HOH F 1 401 458 HOH HOH . PA 5 HOH F 2 402 38 HOH HOH . PA 5 HOH F 3 403 456 HOH HOH . PA 5 HOH F 4 404 436 HOH HOH . PA 5 HOH F 5 405 452 HOH HOH . PA 5 HOH F 6 406 435 HOH HOH . PA 5 HOH F 7 407 510 HOH HOH . PA 5 HOH F 8 408 518 HOH HOH . PA 5 HOH F 9 409 493 HOH HOH . PA 5 HOH F 10 410 502 HOH HOH . PA 5 HOH F 11 411 550 HOH HOH . PA 5 HOH F 12 412 505 HOH HOH . PA 5 HOH F 13 413 727 HOH HOH . PA 5 HOH F 14 414 508 HOH HOH . PA 5 HOH F 15 415 526 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id EA _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.502 _atom_site.Cartn_y 84.756 _atom_site.Cartn_z 100.682 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 301 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #