data_6S1Y # _model_server_result.job_id 93o7aZz6K46QrYUQAB2ZmA _model_server_result.datetime_utc '2024-11-13 12:18:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":709}' # _entry.id 6S1Y # _exptl.entry_id 6S1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6S1Y _cell.length_a 160.972 _cell.length_b 160.972 _cell.length_c 121.888 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 701 NAG 2 n B NAG 2 B 2 NAG A 702 NAG 2 n B BMA 3 B 3 BMA A 703 BMA 3 n C NAG 1 C 1 NAG A 704 NAG 3 n C NAG 2 C 2 NAG A 705 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 149 1_555 A SG CYS 131 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf2 A SG CYS 326 A CYS 352 1_555 A SG CYS 344 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 457 A CYS 483 1_555 A SG CYS 602 A CYS 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf4 A SG CYS 512 A CYS 538 1_555 A SG CYS 530 A CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 43 A ASN 69 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 301 A ASN 327 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? metalc ? metalc1 A NE2 HIS 357 A HIS 383 1_555 G ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A NE2 HIS 361 A HIS 387 1_555 G ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A OE1 GLU 385 A GLU 411 1_555 G ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc4 G ZN ZN . A ZN 709 1_555 H O14 KSN . A KSN 710 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 G ZN ZN . A ZN 709 1_555 H O14 KSN . A KSN 710 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 G ZN ZN . A ZN 709 1_555 H O15 KSN . A KSN 710 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.897 ? metalc ? metalc7 G ZN ZN . A ZN 709 1_555 H O15 KSN . A KSN 710 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S1Y _atom_sites.fract_transf_matrix[1][1] 0.006212 _atom_sites.fract_transf_matrix[1][2] 0.003587 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEG A 1 706 901 PEG PEG . E 5 EDO A 1 707 1001 EDO EDO . F 5 EDO A 1 708 1101 EDO EDO . G 6 ZN A 1 709 1 ZN ZN . H 7 KSN A 1 710 802 KSN PG2 . I 8 HOH A 1 801 117 HOH HOH . I 8 HOH A 2 802 98 HOH HOH . I 8 HOH A 3 803 154 HOH HOH . I 8 HOH A 4 804 104 HOH HOH . I 8 HOH A 5 805 19 HOH HOH . I 8 HOH A 6 806 186 HOH HOH . I 8 HOH A 7 807 37 HOH HOH . I 8 HOH A 8 808 184 HOH HOH . I 8 HOH A 9 809 11 HOH HOH . I 8 HOH A 10 810 18 HOH HOH . I 8 HOH A 11 811 22 HOH HOH . I 8 HOH A 12 812 147 HOH HOH . I 8 HOH A 13 813 109 HOH HOH . I 8 HOH A 14 814 142 HOH HOH . I 8 HOH A 15 815 172 HOH HOH . I 8 HOH A 16 816 182 HOH HOH . I 8 HOH A 17 817 30 HOH HOH . I 8 HOH A 18 818 75 HOH HOH . I 8 HOH A 19 819 80 HOH HOH . I 8 HOH A 20 820 50 HOH HOH . I 8 HOH A 21 821 192 HOH HOH . I 8 HOH A 22 822 179 HOH HOH . I 8 HOH A 23 823 51 HOH HOH . I 8 HOH A 24 824 23 HOH HOH . I 8 HOH A 25 825 28 HOH HOH . I 8 HOH A 26 826 17 HOH HOH . I 8 HOH A 27 827 44 HOH HOH . I 8 HOH A 28 828 47 HOH HOH . I 8 HOH A 29 829 140 HOH HOH . I 8 HOH A 30 830 77 HOH HOH . I 8 HOH A 31 831 161 HOH HOH . I 8 HOH A 32 832 144 HOH HOH . I 8 HOH A 33 833 41 HOH HOH . I 8 HOH A 34 834 48 HOH HOH . I 8 HOH A 35 835 108 HOH HOH . I 8 HOH A 36 836 86 HOH HOH . I 8 HOH A 37 837 174 HOH HOH . I 8 HOH A 38 838 156 HOH HOH . I 8 HOH A 39 839 54 HOH HOH . I 8 HOH A 40 840 195 HOH HOH . I 8 HOH A 41 841 89 HOH HOH . I 8 HOH A 42 842 65 HOH HOH . I 8 HOH A 43 843 16 HOH HOH . I 8 HOH A 44 844 95 HOH HOH . I 8 HOH A 45 845 13 HOH HOH . I 8 HOH A 46 846 171 HOH HOH . I 8 HOH A 47 847 33 HOH HOH . I 8 HOH A 48 848 32 HOH HOH . I 8 HOH A 49 849 181 HOH HOH . I 8 HOH A 50 850 68 HOH HOH . I 8 HOH A 51 851 134 HOH HOH . I 8 HOH A 52 852 7 HOH HOH . I 8 HOH A 53 853 14 HOH HOH . I 8 HOH A 54 854 43 HOH HOH . I 8 HOH A 55 855 76 HOH HOH . I 8 HOH A 56 856 158 HOH HOH . I 8 HOH A 57 857 157 HOH HOH . I 8 HOH A 58 858 88 HOH HOH . I 8 HOH A 59 859 5 HOH HOH . I 8 HOH A 60 860 127 HOH HOH . I 8 HOH A 61 861 58 HOH HOH . I 8 HOH A 62 862 81 HOH HOH . I 8 HOH A 63 863 21 HOH HOH . I 8 HOH A 64 864 148 HOH HOH . I 8 HOH A 65 865 26 HOH HOH . I 8 HOH A 66 866 138 HOH HOH . I 8 HOH A 67 867 105 HOH HOH . I 8 HOH A 68 868 38 HOH HOH . I 8 HOH A 69 869 175 HOH HOH . I 8 HOH A 70 870 61 HOH HOH . I 8 HOH A 71 871 82 HOH HOH . I 8 HOH A 72 872 111 HOH HOH . I 8 HOH A 73 873 165 HOH HOH . I 8 HOH A 74 874 67 HOH HOH . I 8 HOH A 75 875 136 HOH HOH . I 8 HOH A 76 876 25 HOH HOH . I 8 HOH A 77 877 27 HOH HOH . I 8 HOH A 78 878 20 HOH HOH . I 8 HOH A 79 879 131 HOH HOH . I 8 HOH A 80 880 185 HOH HOH . I 8 HOH A 81 881 132 HOH HOH . I 8 HOH A 82 882 66 HOH HOH . I 8 HOH A 83 883 180 HOH HOH . I 8 HOH A 84 884 24 HOH HOH . I 8 HOH A 85 885 60 HOH HOH . I 8 HOH A 86 886 15 HOH HOH . I 8 HOH A 87 887 92 HOH HOH . I 8 HOH A 88 888 31 HOH HOH . I 8 HOH A 89 889 2 HOH HOH . I 8 HOH A 90 890 193 HOH HOH . I 8 HOH A 91 891 34 HOH HOH . I 8 HOH A 92 892 3 HOH HOH . I 8 HOH A 93 893 99 HOH HOH . I 8 HOH A 94 894 10 HOH HOH . I 8 HOH A 95 895 196 HOH HOH . I 8 HOH A 96 896 39 HOH HOH . I 8 HOH A 97 897 100 HOH HOH . I 8 HOH A 98 898 130 HOH HOH . I 8 HOH A 99 899 52 HOH HOH . I 8 HOH A 100 900 63 HOH HOH . I 8 HOH A 101 901 6 HOH HOH . I 8 HOH A 102 902 46 HOH HOH . I 8 HOH A 103 903 1 HOH HOH . I 8 HOH A 104 904 118 HOH HOH . I 8 HOH A 105 905 90 HOH HOH . I 8 HOH A 106 906 122 HOH HOH . I 8 HOH A 107 907 91 HOH HOH . I 8 HOH A 108 908 112 HOH HOH . I 8 HOH A 109 909 123 HOH HOH . I 8 HOH A 110 910 84 HOH HOH . I 8 HOH A 111 911 59 HOH HOH . I 8 HOH A 112 912 159 HOH HOH . I 8 HOH A 113 913 12 HOH HOH . I 8 HOH A 114 914 4 HOH HOH . I 8 HOH A 115 915 64 HOH HOH . I 8 HOH A 116 916 87 HOH HOH . I 8 HOH A 117 917 35 HOH HOH . I 8 HOH A 118 918 79 HOH HOH . I 8 HOH A 119 919 188 HOH HOH . I 8 HOH A 120 920 36 HOH HOH . I 8 HOH A 121 921 189 HOH HOH . I 8 HOH A 122 922 162 HOH HOH . I 8 HOH A 123 923 137 HOH HOH . I 8 HOH A 124 924 155 HOH HOH . I 8 HOH A 125 925 110 HOH HOH . I 8 HOH A 126 926 119 HOH HOH . I 8 HOH A 127 927 141 HOH HOH . I 8 HOH A 128 928 40 HOH HOH . I 8 HOH A 129 929 164 HOH HOH . I 8 HOH A 130 930 70 HOH HOH . I 8 HOH A 131 931 151 HOH HOH . I 8 HOH A 132 932 190 HOH HOH . I 8 HOH A 133 933 191 HOH HOH . I 8 HOH A 134 934 183 HOH HOH . I 8 HOH A 135 935 116 HOH HOH . I 8 HOH A 136 936 74 HOH HOH . I 8 HOH A 137 937 53 HOH HOH . I 8 HOH A 138 938 113 HOH HOH . I 8 HOH A 139 939 94 HOH HOH . I 8 HOH A 140 940 69 HOH HOH . I 8 HOH A 141 941 103 HOH HOH . I 8 HOH A 142 942 85 HOH HOH . I 8 HOH A 143 943 173 HOH HOH . I 8 HOH A 144 944 49 HOH HOH . I 8 HOH A 145 945 73 HOH HOH . I 8 HOH A 146 946 55 HOH HOH . I 8 HOH A 147 947 83 HOH HOH . I 8 HOH A 148 948 9 HOH HOH . I 8 HOH A 149 949 106 HOH HOH . I 8 HOH A 150 950 57 HOH HOH . I 8 HOH A 151 951 120 HOH HOH . I 8 HOH A 152 952 102 HOH HOH . I 8 HOH A 153 953 45 HOH HOH . I 8 HOH A 154 954 8 HOH HOH . I 8 HOH A 155 955 170 HOH HOH . I 8 HOH A 156 956 97 HOH HOH . I 8 HOH A 157 957 153 HOH HOH . I 8 HOH A 158 958 126 HOH HOH . I 8 HOH A 159 959 71 HOH HOH . I 8 HOH A 160 960 129 HOH HOH . I 8 HOH A 161 961 178 HOH HOH . I 8 HOH A 162 962 121 HOH HOH . I 8 HOH A 163 963 167 HOH HOH . I 8 HOH A 164 964 29 HOH HOH . I 8 HOH A 165 965 62 HOH HOH . I 8 HOH A 166 966 128 HOH HOH . I 8 HOH A 167 967 78 HOH HOH . I 8 HOH A 168 968 169 HOH HOH . I 8 HOH A 169 969 72 HOH HOH . I 8 HOH A 170 970 176 HOH HOH . I 8 HOH A 171 971 42 HOH HOH . I 8 HOH A 172 972 150 HOH HOH . I 8 HOH A 173 973 187 HOH HOH . I 8 HOH A 174 974 101 HOH HOH . I 8 HOH A 175 975 194 HOH HOH . I 8 HOH A 176 976 139 HOH HOH . I 8 HOH A 177 977 96 HOH HOH . I 8 HOH A 178 978 114 HOH HOH . I 8 HOH A 179 979 133 HOH HOH . I 8 HOH A 180 980 163 HOH HOH . I 8 HOH A 181 981 125 HOH HOH . I 8 HOH A 182 982 146 HOH HOH . I 8 HOH A 183 983 145 HOH HOH . I 8 HOH A 184 984 198 HOH HOH . I 8 HOH A 185 985 143 HOH HOH . I 8 HOH A 186 986 56 HOH HOH . I 8 HOH A 187 987 124 HOH HOH . I 8 HOH A 188 988 160 HOH HOH . I 8 HOH A 189 989 197 HOH HOH . I 8 HOH A 190 990 115 HOH HOH . I 8 HOH A 191 991 168 HOH HOH . I 8 HOH A 192 992 149 HOH HOH . I 8 HOH A 193 993 135 HOH HOH . I 8 HOH A 194 994 177 HOH HOH . I 8 HOH A 195 995 166 HOH HOH . I 8 HOH A 196 996 107 HOH HOH . I 8 HOH A 197 997 93 HOH HOH . I 8 HOH A 198 998 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 14.706 _atom_site.Cartn_y -59.446 _atom_site.Cartn_z -23.549 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 709 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #