data_6S20 # _model_server_result.job_id d8IY2gYllvXPNn_uzkDVIg _model_server_result.datetime_utc '2024-12-26 06:52:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6S20 # _exptl.entry_id 6S20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.271 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S20 _cell.length_a 86.4 _cell.length_b 86.4 _cell.length_c 122.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 45 C ASP 43 1_555 D CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A OD1 ASP 46 C ASP 44 1_555 D CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A OD1 ASP 334 C ASP 332 1_555 D CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc4 A OD2 ASP 334 C ASP 332 1_555 D CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 A OD1 ASN 335 C ASN 333 1_555 D CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 B O2S NG6 . C NG6 601 1_555 D CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C8 H15 N O9 S' _chem_comp.formula_weight 301.271 _chem_comp.id NG6 _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'N-ACETYL-D-GALACTOSAMINE 6-SULFATE;N-acetyl-6-O-sulfo-beta-D-galactosamine;2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactose;2-acetamido-2-deoxy-6-O-sulfo-D-galactose;2-acetamido-2-deoxy-6-O-sulfo-galactose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NG6 sing 237 n n C1 O1 NG6 sing 238 n n C1 O5 NG6 sing 239 n n C1 H1 NG6 sing 240 n n C2 C3 NG6 sing 241 n n C2 N2 NG6 sing 242 n n C2 H2 NG6 sing 243 n n C3 C4 NG6 sing 244 n n C3 O3 NG6 sing 245 n n C3 H3 NG6 sing 246 n n C4 C5 NG6 sing 247 n n C4 O4 NG6 sing 248 n n C4 H4 NG6 sing 249 n n C5 C6 NG6 sing 250 n n C5 O5 NG6 sing 251 n n C5 H5 NG6 sing 252 n n C6 O6 NG6 sing 253 n n C6 H61 NG6 sing 254 n n C6 H62 NG6 sing 255 n n C7 C8 NG6 sing 256 n n C7 N2 NG6 sing 257 n n C7 O7 NG6 doub 258 n n C8 H81 NG6 sing 259 n n C8 H82 NG6 sing 260 n n C8 H83 NG6 sing 261 n n N2 HN2 NG6 sing 262 n n O1 HO1 NG6 sing 263 n n O3 HO3 NG6 sing 264 n n O4 HO4 NG6 sing 265 n n O6 S NG6 sing 266 n n S O1S NG6 doub 267 n n S O2S NG6 doub 268 n n S O3S NG6 sing 269 n n O3S HOS3 NG6 sing 270 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NG6 DGalpNAc[6S]b 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NG6 N-acetyl-6-sulfo-b-D-galactopyranose 'COMMON NAME' GMML 1 NG6 b-D-GalpNAc6SO3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 6S20 _atom_sites.fract_transf_matrix[1][1] 0.011574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NG6 C 1 601 599 NG6 NG6 . C 3 PGE C 1 602 699 PGE PGE . D 4 CA C 1 603 1 CA CA . E 5 HOH C 1 701 92 HOH HOH . E 5 HOH C 2 702 23 HOH HOH . E 5 HOH C 3 703 96 HOH HOH . E 5 HOH C 4 704 82 HOH HOH . E 5 HOH C 5 705 80 HOH HOH . E 5 HOH C 6 706 93 HOH HOH . E 5 HOH C 7 707 77 HOH HOH . E 5 HOH C 8 708 21 HOH HOH . E 5 HOH C 9 709 57 HOH HOH . E 5 HOH C 10 710 49 HOH HOH . E 5 HOH C 11 711 51 HOH HOH . E 5 HOH C 12 712 90 HOH HOH . E 5 HOH C 13 713 31 HOH HOH . E 5 HOH C 14 714 50 HOH HOH . E 5 HOH C 15 715 70 HOH HOH . E 5 HOH C 16 716 27 HOH HOH . E 5 HOH C 17 717 66 HOH HOH . E 5 HOH C 18 718 63 HOH HOH . E 5 HOH C 19 719 11 HOH HOH . E 5 HOH C 20 720 45 HOH HOH . E 5 HOH C 21 721 6 HOH HOH . E 5 HOH C 22 722 71 HOH HOH . E 5 HOH C 23 723 39 HOH HOH . E 5 HOH C 24 724 101 HOH HOH . E 5 HOH C 25 725 64 HOH HOH . E 5 HOH C 26 726 60 HOH HOH . E 5 HOH C 27 727 104 HOH HOH . E 5 HOH C 28 728 102 HOH HOH . E 5 HOH C 29 729 7 HOH HOH . E 5 HOH C 30 730 107 HOH HOH . E 5 HOH C 31 731 30 HOH HOH . E 5 HOH C 32 732 59 HOH HOH . E 5 HOH C 33 733 28 HOH HOH . E 5 HOH C 34 734 111 HOH HOH . E 5 HOH C 35 735 97 HOH HOH . E 5 HOH C 36 736 14 HOH HOH . E 5 HOH C 37 737 110 HOH HOH . E 5 HOH C 38 738 103 HOH HOH . E 5 HOH C 39 739 87 HOH HOH . E 5 HOH C 40 740 32 HOH HOH . E 5 HOH C 41 741 68 HOH HOH . E 5 HOH C 42 742 19 HOH HOH . E 5 HOH C 43 743 22 HOH HOH . E 5 HOH C 44 744 72 HOH HOH . E 5 HOH C 45 745 69 HOH HOH . E 5 HOH C 46 746 81 HOH HOH . E 5 HOH C 47 747 67 HOH HOH . E 5 HOH C 48 748 44 HOH HOH . E 5 HOH C 49 749 29 HOH HOH . E 5 HOH C 50 750 56 HOH HOH . E 5 HOH C 51 751 38 HOH HOH . E 5 HOH C 52 752 18 HOH HOH . E 5 HOH C 53 753 91 HOH HOH . E 5 HOH C 54 754 105 HOH HOH . E 5 HOH C 55 755 74 HOH HOH . E 5 HOH C 56 756 37 HOH HOH . E 5 HOH C 57 757 88 HOH HOH . E 5 HOH C 58 758 55 HOH HOH . E 5 HOH C 59 759 84 HOH HOH . E 5 HOH C 60 760 65 HOH HOH . E 5 HOH C 61 761 53 HOH HOH . E 5 HOH C 62 762 35 HOH HOH . E 5 HOH C 63 763 9 HOH HOH . E 5 HOH C 64 764 47 HOH HOH . E 5 HOH C 65 765 12 HOH HOH . E 5 HOH C 66 766 48 HOH HOH . E 5 HOH C 67 767 52 HOH HOH . E 5 HOH C 68 768 79 HOH HOH . E 5 HOH C 69 769 46 HOH HOH . E 5 HOH C 70 770 73 HOH HOH . E 5 HOH C 71 771 34 HOH HOH . E 5 HOH C 72 772 36 HOH HOH . E 5 HOH C 73 773 78 HOH HOH . E 5 HOH C 74 774 61 HOH HOH . E 5 HOH C 75 775 85 HOH HOH . E 5 HOH C 76 776 8 HOH HOH . E 5 HOH C 77 777 94 HOH HOH . E 5 HOH C 78 778 41 HOH HOH . E 5 HOH C 79 779 2 HOH HOH . E 5 HOH C 80 780 108 HOH HOH . E 5 HOH C 81 781 95 HOH HOH . E 5 HOH C 82 782 43 HOH HOH . E 5 HOH C 83 783 106 HOH HOH . E 5 HOH C 84 784 89 HOH HOH . E 5 HOH C 85 785 75 HOH HOH . E 5 HOH C 86 786 76 HOH HOH . E 5 HOH C 87 787 24 HOH HOH . E 5 HOH C 88 788 58 HOH HOH . E 5 HOH C 89 789 1 HOH HOH . E 5 HOH C 90 790 15 HOH HOH . E 5 HOH C 91 791 62 HOH HOH . E 5 HOH C 92 792 3 HOH HOH . E 5 HOH C 93 793 112 HOH HOH . E 5 HOH C 94 794 86 HOH HOH . E 5 HOH C 95 795 40 HOH HOH . E 5 HOH C 96 796 33 HOH HOH . E 5 HOH C 97 797 42 HOH HOH . E 5 HOH C 98 798 26 HOH HOH . E 5 HOH C 99 799 109 HOH HOH . E 5 HOH C 100 800 83 HOH HOH . E 5 HOH C 101 801 54 HOH HOH . E 5 HOH C 102 802 20 HOH HOH . E 5 HOH C 103 803 25 HOH HOH . E 5 HOH C 104 804 13 HOH HOH . E 5 HOH C 105 805 16 HOH HOH . E 5 HOH C 106 806 5 HOH HOH . E 5 HOH C 107 807 4 HOH HOH . E 5 HOH C 108 808 17 HOH HOH . E 5 HOH C 109 809 10 HOH HOH . E 5 HOH C 110 810 100 HOH HOH . E 5 HOH C 111 811 98 HOH HOH . E 5 HOH C 112 812 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NG6 . . . B 2 22.074 1.434 -32.094 1 25.24 ? C1 NG6 601 C 1 HETATM 2 C C2 NG6 . . . B 2 21.679 0.403 -31.016 1 25.78 ? C2 NG6 601 C 1 HETATM 3 C C3 NG6 . . . B 2 20.565 1.017 -30.159 1 24.46 ? C3 NG6 601 C 1 HETATM 4 C C4 NG6 . . . B 2 20.988 2.409 -29.678 1 24.53 ? C4 NG6 601 C 1 HETATM 5 C C5 NG6 . . . B 2 21.343 3.252 -30.887 1 24.48 ? C5 NG6 601 C 1 HETATM 6 C C6 NG6 . . . B 2 21.682 4.699 -30.574 1 25.18 ? C6 NG6 601 C 1 HETATM 7 C C7 NG6 . . . B 2 22.116 -1.904 -31.768 1 25.92 ? C7 NG6 601 C 1 HETATM 8 C C8 NG6 . . . B 2 21.557 -3.154 -32.38 1 24.89 ? C8 NG6 601 C 1 HETATM 9 N N2 NG6 . . . B 2 21.3 -0.874 -31.625 1 24.93 ? N2 NG6 601 C 1 HETATM 10 O O1 NG6 . . . B 2 23.223 1.009 -32.761 1 27.71 ? O1 NG6 601 C 1 HETATM 11 O O3 NG6 . . . B 2 20.349 0.179 -29.035 1 25.4 ? O3 NG6 601 C 1 HETATM 12 O O4 NG6 . . . B 2 22.041 2.28 -28.669 1 22.16 ? O4 NG6 601 C 1 HETATM 13 O O5 NG6 . . . B 2 22.454 2.698 -31.573 1 26.03 ? O5 NG6 601 C 1 HETATM 14 O O6 NG6 . . . B 2 20.606 5.392 -29.998 1 27.04 ? O6 NG6 601 C 1 HETATM 15 O O7 NG6 . . . B 2 23.254 -1.894 -31.382 1 26.85 ? O7 NG6 601 C 1 HETATM 16 S S NG6 . . . B 2 20.758 6.932 -29.989 1 27.84 ? S NG6 601 C 1 HETATM 17 O O1S NG6 . . . B 2 21.043 7.294 -31.348 1 24.69 ? O1S NG6 601 C 1 HETATM 18 O O2S NG6 . . . B 2 19.543 7.455 -29.437 1 24.37 ? O2S NG6 601 C 1 HETATM 19 O O3S NG6 . . . B 2 21.945 7.265 -28.988 1 25.22 ? O3S NG6 601 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #