data_6S21 # _model_server_result.job_id 6TH9vyS5iY0NhT4ijkuSVg _model_server_result.datetime_utc '2024-12-26 20:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 6S21 # _exptl.entry_id 6S21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S21 _cell.length_a 51.905 _cell.length_b 93.911 _cell.length_c 304.086 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,J 1 1 B,E,H,K 2 1 C,F,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 ASG BDP C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GCD ASG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D BDP 1 D 1 BDP A 801 GCW 2 n D ASG 2 D 2 ASG A 602 ASG 2 n D GCD 3 D 3 GCD A 603 GCD 2 n E BDP 1 E 1 BDP B 801 GCW 2 n E ASG 2 E 2 ASG B 602 ASG 2 n E GCD 3 E 3 GCD B 603 GCD 2 n F BDP 1 F 1 BDP C 801 GCW 2 n F ASG 2 F 2 ASG C 602 ASG 2 n F GCD 3 F 3 GCD C 603 GCD # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O4 BDP . D BDP 1 1_555 D C1 ASG . D ASG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 D O3 ASG . D ASG 2 1_555 D C1 GCD . D GCD 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale3 E O4 BDP . E BDP 1 1_555 E C1 ASG . E ASG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale4 E O3 ASG . E ASG 2 1_555 E C1 GCD . E GCD 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale5 F O4 BDP . F BDP 1 1_555 F C1 ASG . F ASG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 F O3 ASG . F ASG 2 1_555 F C1 GCD . F GCD 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A OD1 ASP 38 A ASP 33 1_555 G CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A OD2 ASP 38 A ASP 33 1_555 G CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc3 A OD2 ASP 324 A ASP 319 1_555 G CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc4 G CA CA . A CA 601 1_555 D OSC ASG . D ASG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc5 B OD1 ASP 38 B ASP 33 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 B OD2 ASP 38 B ASP 33 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc7 B OD2 ASP 324 B ASP 319 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc8 H CA CA . B CA 601 1_555 E OSB ASG . E ASG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 C OD1 ASP 38 C ASP 33 1_555 I CA CA . C CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc10 C OD2 ASP 38 C ASP 33 1_555 I CA CA . C CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc11 C OD2 ASP 324 C ASP 319 1_555 I CA CA . C CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc12 I CA CA . C CA 601 1_555 F OSB ASG . F ASG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S21 _atom_sites.fract_transf_matrix[1][1] 0.019266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CA A 1 601 601 CA CA . H 3 CA B 1 601 601 CA CA . I 3 CA C 1 601 601 CA CA . J 4 HOH A 1 701 701 HOH HOH . J 4 HOH A 2 702 702 HOH HOH . J 4 HOH A 3 703 704 HOH HOH . J 4 HOH A 4 704 703 HOH HOH . J 4 HOH A 5 705 705 HOH HOH . J 4 HOH A 6 706 706 HOH HOH . J 4 HOH A 7 707 707 HOH HOH . J 4 HOH A 8 708 708 HOH HOH . J 4 HOH A 9 709 709 HOH HOH . J 4 HOH A 10 710 710 HOH HOH . J 4 HOH A 11 711 712 HOH HOH . J 4 HOH A 12 712 711 HOH HOH . J 4 HOH A 13 713 714 HOH HOH . J 4 HOH A 14 714 715 HOH HOH . J 4 HOH A 15 715 713 HOH HOH . J 4 HOH A 16 716 716 HOH HOH . K 4 HOH B 1 701 701 HOH HOH . K 4 HOH B 2 702 702 HOH HOH . K 4 HOH B 3 703 703 HOH HOH . K 4 HOH B 4 704 705 HOH HOH . K 4 HOH B 5 705 704 HOH HOH . K 4 HOH B 6 706 706 HOH HOH . K 4 HOH B 7 707 707 HOH HOH . K 4 HOH B 8 708 708 HOH HOH . K 4 HOH B 9 709 710 HOH HOH . K 4 HOH B 10 710 709 HOH HOH . K 4 HOH B 11 711 711 HOH HOH . K 4 HOH B 12 712 712 HOH HOH . K 4 HOH B 13 713 713 HOH HOH . K 4 HOH B 14 714 714 HOH HOH . K 4 HOH B 15 715 715 HOH HOH . K 4 HOH B 16 716 716 HOH HOH . L 4 HOH C 1 701 701 HOH HOH . L 4 HOH C 2 702 702 HOH HOH . L 4 HOH C 3 703 703 HOH HOH . L 4 HOH C 4 704 706 HOH HOH . L 4 HOH C 5 705 704 HOH HOH . L 4 HOH C 6 706 705 HOH HOH . L 4 HOH C 7 707 708 HOH HOH . L 4 HOH C 8 708 707 HOH HOH . L 4 HOH C 9 709 713 HOH HOH . L 4 HOH C 10 710 710 HOH HOH . L 4 HOH C 11 711 709 HOH HOH . L 4 HOH C 12 712 711 HOH HOH . L 4 HOH C 13 713 712 HOH HOH . L 4 HOH C 14 714 715 HOH HOH . L 4 HOH C 15 715 716 HOH HOH . L 4 HOH C 16 716 714 HOH HOH . L 4 HOH C 17 717 717 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 46.862 _atom_site.Cartn_y 56.932 _atom_site.Cartn_z 22.751 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #