data_6S23 # _model_server_result.job_id QUGhtTSkMJpciTGSCxwJAA _model_server_result.datetime_utc '2025-08-31 11:57:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6S23 # _exptl.entry_id 6S23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.4 _cell.angle_gamma 90 _cell.entry_id 6S23 _cell.length_a 56.693 _cell.length_b 76.421 _cell.length_c 86.334 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O GLY 70 B GLY 50 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 H MG MG . B MG 403 1_555 J O HOH . B HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 H MG MG . B MG 403 1_555 J O HOH . B HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6S23 _atom_sites.fract_transf_matrix[1][1] 0.017639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 401 1004 FMN FMN . D 3 KSW A 1 402 1 KSW MCP . E 3 KSW A 1 403 3 KSW MCP . F 2 FMN B 1 401 1004 FMN FMN . G 3 KSW B 1 402 2 KSW MCP . H 4 MG B 1 403 1 MG MG . I 5 HOH A 1 501 90 HOH HOH . I 5 HOH A 2 502 4 HOH HOH . I 5 HOH A 3 503 53 HOH HOH . I 5 HOH A 4 504 98 HOH HOH . I 5 HOH A 5 505 1 HOH HOH . I 5 HOH A 6 506 9 HOH HOH . I 5 HOH A 7 507 61 HOH HOH . I 5 HOH A 8 508 55 HOH HOH . I 5 HOH A 9 509 32 HOH HOH . I 5 HOH A 10 510 59 HOH HOH . I 5 HOH A 11 511 28 HOH HOH . I 5 HOH A 12 512 47 HOH HOH . I 5 HOH A 13 513 70 HOH HOH . I 5 HOH A 14 514 35 HOH HOH . I 5 HOH A 15 515 87 HOH HOH . I 5 HOH A 16 516 38 HOH HOH . I 5 HOH A 17 517 11 HOH HOH . I 5 HOH A 18 518 79 HOH HOH . I 5 HOH A 19 519 78 HOH HOH . I 5 HOH A 20 520 43 HOH HOH . I 5 HOH A 21 521 65 HOH HOH . I 5 HOH A 22 522 84 HOH HOH . I 5 HOH A 23 523 5 HOH HOH . I 5 HOH A 24 524 8 HOH HOH . I 5 HOH A 25 525 17 HOH HOH . I 5 HOH A 26 526 83 HOH HOH . I 5 HOH A 27 527 10 HOH HOH . I 5 HOH A 28 528 95 HOH HOH . I 5 HOH A 29 529 16 HOH HOH . I 5 HOH A 30 530 22 HOH HOH . I 5 HOH A 31 531 58 HOH HOH . I 5 HOH A 32 532 48 HOH HOH . I 5 HOH A 33 533 75 HOH HOH . I 5 HOH A 34 534 71 HOH HOH . I 5 HOH A 35 535 39 HOH HOH . I 5 HOH A 36 536 80 HOH HOH . I 5 HOH A 37 537 66 HOH HOH . I 5 HOH A 38 538 2 HOH HOH . I 5 HOH A 39 539 64 HOH HOH . I 5 HOH A 40 540 86 HOH HOH . J 5 HOH B 1 501 23 HOH HOH . J 5 HOH B 2 502 74 HOH HOH . J 5 HOH B 3 503 67 HOH HOH . J 5 HOH B 4 504 85 HOH HOH . J 5 HOH B 5 505 57 HOH HOH . J 5 HOH B 6 506 94 HOH HOH . J 5 HOH B 7 507 69 HOH HOH . J 5 HOH B 8 508 27 HOH HOH . J 5 HOH B 9 509 56 HOH HOH . J 5 HOH B 10 510 63 HOH HOH . J 5 HOH B 11 511 37 HOH HOH . J 5 HOH B 12 512 77 HOH HOH . J 5 HOH B 13 513 19 HOH HOH . J 5 HOH B 14 514 40 HOH HOH . J 5 HOH B 15 515 34 HOH HOH . J 5 HOH B 16 516 3 HOH HOH . J 5 HOH B 17 517 49 HOH HOH . J 5 HOH B 18 518 54 HOH HOH . J 5 HOH B 19 519 60 HOH HOH . J 5 HOH B 20 520 7 HOH HOH . J 5 HOH B 21 521 30 HOH HOH . J 5 HOH B 22 522 41 HOH HOH . J 5 HOH B 23 523 24 HOH HOH . J 5 HOH B 24 524 44 HOH HOH . J 5 HOH B 25 525 51 HOH HOH . J 5 HOH B 26 526 29 HOH HOH . J 5 HOH B 27 527 14 HOH HOH . J 5 HOH B 28 528 26 HOH HOH . J 5 HOH B 29 529 18 HOH HOH . J 5 HOH B 30 530 25 HOH HOH . J 5 HOH B 31 531 62 HOH HOH . J 5 HOH B 32 532 91 HOH HOH . J 5 HOH B 33 533 46 HOH HOH . J 5 HOH B 34 534 76 HOH HOH . J 5 HOH B 35 535 93 HOH HOH . J 5 HOH B 36 536 12 HOH HOH . J 5 HOH B 37 537 6 HOH HOH . J 5 HOH B 38 538 50 HOH HOH . J 5 HOH B 39 539 31 HOH HOH . J 5 HOH B 40 540 68 HOH HOH . J 5 HOH B 41 541 36 HOH HOH . J 5 HOH B 42 542 15 HOH HOH . J 5 HOH B 43 543 72 HOH HOH . J 5 HOH B 44 544 33 HOH HOH . J 5 HOH B 45 545 20 HOH HOH . J 5 HOH B 46 546 42 HOH HOH . J 5 HOH B 47 547 89 HOH HOH . J 5 HOH B 48 548 88 HOH HOH . J 5 HOH B 49 549 73 HOH HOH . J 5 HOH B 50 550 81 HOH HOH . J 5 HOH B 51 551 45 HOH HOH . J 5 HOH B 52 552 92 HOH HOH . J 5 HOH B 53 553 52 HOH HOH . J 5 HOH B 54 554 82 HOH HOH . J 5 HOH B 55 555 97 HOH HOH . J 5 HOH B 56 556 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 2 -17.044 17.477 87.425 1 5.01 ? N1 FMN 401 B 1 HETATM 2 C C2 FMN . . . F 2 -17.554 16.354 86.845 1 4.82 ? C2 FMN 401 B 1 HETATM 3 O O2 FMN . . . F 2 -17.818 15.346 87.5 1 5.04 ? O2 FMN 401 B 1 HETATM 4 N N3 FMN . . . F 2 -17.761 16.237 85.486 1 4.53 ? N3 FMN 401 B 1 HETATM 5 C C4 FMN . . . F 2 -17.48 17.196 84.62 1 4.41 ? C4 FMN 401 B 1 HETATM 6 O O4 FMN . . . F 2 -17.699 17.019 83.435 1 4.32 ? O4 FMN 401 B 1 HETATM 7 C C4A FMN . . . F 2 -16.947 18.441 85.097 1 4.58 ? C4A FMN 401 B 1 HETATM 8 N N5 FMN . . . F 2 -16.657 19.447 84.227 1 4.63 ? N5 FMN 401 B 1 HETATM 9 C C5A FMN . . . F 2 -16.084 20.54 84.713 1 4.93 ? C5A FMN 401 B 1 HETATM 10 C C6 FMN . . . F 2 -15.751 21.539 83.865 1 5.14 ? C6 FMN 401 B 1 HETATM 11 C C7 FMN . . . F 2 -15.177 22.732 84.342 1 5.65 ? C7 FMN 401 B 1 HETATM 12 C C7M FMN . . . F 2 -14.799 23.793 83.357 1 6.06 ? C7M FMN 401 B 1 HETATM 13 C C8 FMN . . . F 2 -14.901 22.943 85.81 1 5.97 ? C8 FMN 401 B 1 HETATM 14 C C8M FMN . . . F 2 -14.264 24.21 86.336 1 6.72 ? C8M FMN 401 B 1 HETATM 15 C C9 FMN . . . F 2 -15.274 21.918 86.676 1 5.76 ? C9 FMN 401 B 1 HETATM 16 C C9A FMN . . . F 2 -15.834 20.705 86.178 1 5.24 ? C9A FMN 401 B 1 HETATM 17 N N10 FMN . . . F 2 -16.172 19.645 87.076 1 5.2 ? N10 FMN 401 B 1 HETATM 18 C C10 FMN . . . F 2 -16.716 18.486 86.57 1 4.87 ? C10 FMN 401 B 1 HETATM 19 C C1' FMN . . . F 2 -15.914 19.668 88.509 1 5.66 ? C1' FMN 401 B 1 HETATM 20 C C2' FMN . . . F 2 -14.393 19.436 88.615 1 5.45 ? C2' FMN 401 B 1 HETATM 21 O O2' FMN . . . F 2 -14.084 18.118 88.198 1 4.96 ? O2' FMN 401 B 1 HETATM 22 C C3' FMN . . . F 2 -13.794 19.698 89.988 1 6.08 ? C3' FMN 401 B 1 HETATM 23 O O3' FMN . . . F 2 -14.494 18.89 90.924 1 6.4 ? O3' FMN 401 B 1 HETATM 24 C C4' FMN . . . F 2 -13.825 21.205 90.336 1 6.78 ? C4' FMN 401 B 1 HETATM 25 O O4' FMN . . . F 2 -13.177 22.014 89.343 1 6.61 ? O4' FMN 401 B 1 HETATM 26 C C5' FMN . . . F 2 -12.989 21.497 91.548 1 7.51 ? C5' FMN 401 B 1 HETATM 27 O O5' FMN . . . F 2 -11.66 20.991 91.43 1 7.24 ? O5' FMN 401 B 1 HETATM 28 P P FMN . . . F 2 -10.422 22.032 91.279 1 7.65 ? P FMN 401 B 1 HETATM 29 O O1P FMN . . . F 2 -10.494 22.777 92.626 1 8.82 ? O1P FMN 401 B 1 HETATM 30 O O2P FMN . . . F 2 -10.877 22.646 89.998 1 7.24 ? O2P FMN 401 B 1 HETATM 31 O O3P FMN . . . F 2 -9.198 21.153 91.101 1 7.29 ? O3P FMN 401 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #