data_6S23 # _model_server_result.job_id MUNtdJD4QGhBSRY0CvjPRg _model_server_result.datetime_utc '2025-08-31 11:57:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 6S23 # _exptl.entry_id 6S23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methylcyclopenta-2,4-dien-1-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.4 _cell.angle_gamma 90 _cell.entry_id 6S23 _cell.length_a 56.693 _cell.length_b 76.421 _cell.length_c 86.334 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O GLY 70 B GLY 50 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 H MG MG . B MG 403 1_555 J O HOH . B HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 H MG MG . B MG 403 1_555 J O HOH . B HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id KSW _chem_comp.mon_nstd_flag . _chem_comp.name 2-methylcyclopenta-2,4-dien-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 KSW sing 227 n n C5 C4 KSW doub 228 n n O1 C6 KSW doub 229 n n C6 C2 KSW sing 230 n n C4 C3 KSW sing 231 n n C2 C3 KSW doub 232 n n C2 C1 KSW sing 233 n n C1 H1 KSW sing 234 n n C1 H2 KSW sing 235 n n C1 H3 KSW sing 236 n n C3 H4 KSW sing 237 n n C4 H5 KSW sing 238 n n C5 H6 KSW sing 239 n n # _atom_sites.entry_id 6S23 _atom_sites.fract_transf_matrix[1][1] 0.017639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 401 1004 FMN FMN . D 3 KSW A 1 402 1 KSW MCP . E 3 KSW A 1 403 3 KSW MCP . F 2 FMN B 1 401 1004 FMN FMN . G 3 KSW B 1 402 2 KSW MCP . H 4 MG B 1 403 1 MG MG . I 5 HOH A 1 501 90 HOH HOH . I 5 HOH A 2 502 4 HOH HOH . I 5 HOH A 3 503 53 HOH HOH . I 5 HOH A 4 504 98 HOH HOH . I 5 HOH A 5 505 1 HOH HOH . I 5 HOH A 6 506 9 HOH HOH . I 5 HOH A 7 507 61 HOH HOH . I 5 HOH A 8 508 55 HOH HOH . I 5 HOH A 9 509 32 HOH HOH . I 5 HOH A 10 510 59 HOH HOH . I 5 HOH A 11 511 28 HOH HOH . I 5 HOH A 12 512 47 HOH HOH . I 5 HOH A 13 513 70 HOH HOH . I 5 HOH A 14 514 35 HOH HOH . I 5 HOH A 15 515 87 HOH HOH . I 5 HOH A 16 516 38 HOH HOH . I 5 HOH A 17 517 11 HOH HOH . I 5 HOH A 18 518 79 HOH HOH . I 5 HOH A 19 519 78 HOH HOH . I 5 HOH A 20 520 43 HOH HOH . I 5 HOH A 21 521 65 HOH HOH . I 5 HOH A 22 522 84 HOH HOH . I 5 HOH A 23 523 5 HOH HOH . I 5 HOH A 24 524 8 HOH HOH . I 5 HOH A 25 525 17 HOH HOH . I 5 HOH A 26 526 83 HOH HOH . I 5 HOH A 27 527 10 HOH HOH . I 5 HOH A 28 528 95 HOH HOH . I 5 HOH A 29 529 16 HOH HOH . I 5 HOH A 30 530 22 HOH HOH . I 5 HOH A 31 531 58 HOH HOH . I 5 HOH A 32 532 48 HOH HOH . I 5 HOH A 33 533 75 HOH HOH . I 5 HOH A 34 534 71 HOH HOH . I 5 HOH A 35 535 39 HOH HOH . I 5 HOH A 36 536 80 HOH HOH . I 5 HOH A 37 537 66 HOH HOH . I 5 HOH A 38 538 2 HOH HOH . I 5 HOH A 39 539 64 HOH HOH . I 5 HOH A 40 540 86 HOH HOH . J 5 HOH B 1 501 23 HOH HOH . J 5 HOH B 2 502 74 HOH HOH . J 5 HOH B 3 503 67 HOH HOH . J 5 HOH B 4 504 85 HOH HOH . J 5 HOH B 5 505 57 HOH HOH . J 5 HOH B 6 506 94 HOH HOH . J 5 HOH B 7 507 69 HOH HOH . J 5 HOH B 8 508 27 HOH HOH . J 5 HOH B 9 509 56 HOH HOH . J 5 HOH B 10 510 63 HOH HOH . J 5 HOH B 11 511 37 HOH HOH . J 5 HOH B 12 512 77 HOH HOH . J 5 HOH B 13 513 19 HOH HOH . J 5 HOH B 14 514 40 HOH HOH . J 5 HOH B 15 515 34 HOH HOH . J 5 HOH B 16 516 3 HOH HOH . J 5 HOH B 17 517 49 HOH HOH . J 5 HOH B 18 518 54 HOH HOH . J 5 HOH B 19 519 60 HOH HOH . J 5 HOH B 20 520 7 HOH HOH . J 5 HOH B 21 521 30 HOH HOH . J 5 HOH B 22 522 41 HOH HOH . J 5 HOH B 23 523 24 HOH HOH . J 5 HOH B 24 524 44 HOH HOH . J 5 HOH B 25 525 51 HOH HOH . J 5 HOH B 26 526 29 HOH HOH . J 5 HOH B 27 527 14 HOH HOH . J 5 HOH B 28 528 26 HOH HOH . J 5 HOH B 29 529 18 HOH HOH . J 5 HOH B 30 530 25 HOH HOH . J 5 HOH B 31 531 62 HOH HOH . J 5 HOH B 32 532 91 HOH HOH . J 5 HOH B 33 533 46 HOH HOH . J 5 HOH B 34 534 76 HOH HOH . J 5 HOH B 35 535 93 HOH HOH . J 5 HOH B 36 536 12 HOH HOH . J 5 HOH B 37 537 6 HOH HOH . J 5 HOH B 38 538 50 HOH HOH . J 5 HOH B 39 539 31 HOH HOH . J 5 HOH B 40 540 68 HOH HOH . J 5 HOH B 41 541 36 HOH HOH . J 5 HOH B 42 542 15 HOH HOH . J 5 HOH B 43 543 72 HOH HOH . J 5 HOH B 44 544 33 HOH HOH . J 5 HOH B 45 545 20 HOH HOH . J 5 HOH B 46 546 42 HOH HOH . J 5 HOH B 47 547 89 HOH HOH . J 5 HOH B 48 548 88 HOH HOH . J 5 HOH B 49 549 73 HOH HOH . J 5 HOH B 50 550 81 HOH HOH . J 5 HOH B 51 551 45 HOH HOH . J 5 HOH B 52 552 92 HOH HOH . J 5 HOH B 53 553 52 HOH HOH . J 5 HOH B 54 554 82 HOH HOH . J 5 HOH B 55 555 97 HOH HOH . J 5 HOH B 56 556 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KSW . . . G 3 -19.639 20.746 87.681 1 0.5 ? C1 KSW 402 B 1 HETATM 2 C C2 KSW . . . G 3 -19.911 20.297 86.275 1 0.5 ? C2 KSW 402 B 1 HETATM 3 C C3 KSW . . . G 3 -19.945 20.987 85.113 1 0.5 ? C3 KSW 402 B 1 HETATM 4 C C4 KSW . . . G 3 -20.195 20.114 83.928 1 0.5 ? C4 KSW 402 B 1 HETATM 5 C C5 KSW . . . G 3 -20.587 18.777 84.527 1 0.5 ? C5 KSW 402 B 1 HETATM 6 C C6 KSW . . . G 3 -20.213 18.887 85.975 1 0.5 ? C6 KSW 402 B 1 HETATM 7 O O1 KSW . . . G 3 -20.164 17.944 86.764 1 0.5 ? O1 KSW 402 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 651 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #