data_6S2J # _model_server_result.job_id gQ2RMe25jrvPKJttGlLkXg _model_server_result.datetime_utc '2024-11-08 13:51:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6S2J # _exptl.entry_id 6S2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S2J _cell.length_a 123.276 _cell.length_b 123.276 _cell.length_c 84.451 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,3 A,B,C,D,E,F 1 2 A,B,C,D,E,F 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 123.276 123.276 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 123.276 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 123.276 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 125 A GLU 125 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 C O2G ATP . A ATP 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc3 D O2G ATP . A ATP 602 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc4 E MG MG . A MG 603 1_555 F O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 E MG MG . A MG 603 1_555 F O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 E MG MG . A MG 603 1_555 B OE2 GLU 125 B GLU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6S2J _atom_sites.fract_transf_matrix[1][1] 0.008112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 601 601 ATP ATP . D 2 ATP A 1 602 601 ATP ATP . E 3 MG A 1 603 1 MG MG . F 4 HOH A 1 701 2 HOH HOH . F 4 HOH A 2 702 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 40.378 73.762 -11.327 1 81.31 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . C 2 40.51 72.34 -11.849 1 73.59 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . C 2 39.869 73.925 -9.924 1 54.58 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . C 2 39.81 74.757 -12.331 1 95.66 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . C 2 43.016 74 -10.202 1 86.1 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . C 2 42.669 75.081 -9.208 1 74.5 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . C 2 43.105 72.552 -9.767 1 93.83 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . C 2 41.92 74.209 -11.346 1 87.11 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . C 2 45.087 73.501 -12.109 1 91.87 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . C 2 44.138 72.357 -12.456 1 66.65 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . C 2 46.487 73.186 -11.649 1 84.66 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . C 2 44.35 74.444 -11.018 1 68.84 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . C 2 45.229 74.475 -13.385 1 110.7 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . C 2 44.301 74.385 -14.464 1 106.09 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . C 2 45.032 74.422 -15.788 1 90.22 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . C 2 46.086 75.379 -15.825 1 103.64 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . C 2 45.688 73.092 -16.068 1 68.56 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . C 2 44.875 72.41 -17.031 1 88.2 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . C 2 47.082 73.43 -16.579 1 78.89 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . C 2 47.416 72.739 -17.784 1 116.84 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . C 2 46.993 74.918 -16.823 1 72.57 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . C 2 48.285 75.632 -16.759 1 70.34 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . C 2 49.133 75.649 -15.719 1 74.76 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . C 2 50.219 76.411 -15.997 1 67.86 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . C 2 50.065 76.899 -17.232 1 83.2 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . C 2 50.86 77.773 -18.112 1 62.6 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . C 2 52.037 78.247 -17.654 1 106.7 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . C 2 50.365 78.053 -19.338 1 108.26 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . C 2 49.182 77.551 -19.754 1 75.36 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . C 2 48.405 76.748 -18.997 1 70.61 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . C 2 48.788 76.387 -17.743 1 91 ? C4 ATP 601 A 1 HETATM 32 H "H5'1" ATP . . . C 2 43.735 73.455 -14.385 1 127.31 ? "H5'1" ATP 601 A 1 HETATM 33 H "H5'2" ATP . . . C 2 43.595 75.216 -14.412 1 127.31 ? "H5'2" ATP 601 A 1 HETATM 34 H H3' ATP . . . C 2 45.763 72.513 -15.136 1 82.28 ? H3' ATP 601 A 1 HETATM 35 H H2' ATP . . . C 2 47.823 73.229 -15.792 1 94.66 ? H2' ATP 601 A 1 HETATM 36 H H1' ATP . . . C 2 46.546 75.073 -17.815 1 87.09 ? H1' ATP 601 A 1 HETATM 37 H H8 ATP . . . C 2 48.974 75.122 -14.786 1 89.71 ? H8 ATP 601 A 1 HETATM 38 H HN61 ATP . . . C 2 52.601 78.847 -18.238 1 128.04 ? HN61 ATP 601 A 1 HETATM 39 H HN62 ATP . . . C 2 52.354 78 -16.727 1 128.04 ? HN62 ATP 601 A 1 HETATM 40 H H2 ATP . . . C 2 48.835 77.813 -20.746 1 90.43 ? H2 ATP 601 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #