data_6S2U # _model_server_result.job_id FW9Vfk1dvxv2vu3vrghNAw _model_server_result.datetime_utc '2024-10-20 08:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6S2U # _exptl.entry_id 6S2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111 _cell.angle_gamma 90 _cell.entry_id 6S2U _cell.length_a 120.739 _cell.length_b 50.346 _cell.length_c 86.057 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 52 A HIS 52 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A NE2 HIS 76 A HIS 76 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc3 A OD2 ASP 146 A ASP 146 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 D O10 GN3 . A GN3 403 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 D O9 GN3 . A GN3 403 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc6 D O7 GN3 . A GN3 403 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc7 D O5 GN3 . A GN3 403 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6S2U _atom_sites.fract_transf_matrix[1][1] 0.008282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003179 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 1 MN MN . C 3 AMP A 1 402 1 AMP AMP . D 4 GN3 A 1 403 501 GN3 GN3 . E 5 TMO A 1 404 601 TMO TMO . F 6 MG A 1 405 1 MG MG . G 6 MG A 1 406 2 MG MG . H 7 HOH A 1 501 21 HOH HOH . H 7 HOH A 2 502 7 HOH HOH . H 7 HOH A 3 503 12 HOH HOH . H 7 HOH A 4 504 8 HOH HOH . H 7 HOH A 5 505 11 HOH HOH . H 7 HOH A 6 506 16 HOH HOH . H 7 HOH A 7 507 3 HOH HOH . H 7 HOH A 8 508 13 HOH HOH . H 7 HOH A 9 509 1 HOH HOH . H 7 HOH A 10 510 15 HOH HOH . H 7 HOH A 11 511 2 HOH HOH . H 7 HOH A 12 512 10 HOH HOH . H 7 HOH A 13 513 4 HOH HOH . H 7 HOH A 14 514 18 HOH HOH . H 7 HOH A 15 515 9 HOH HOH . H 7 HOH A 16 516 5 HOH HOH . H 7 HOH A 17 517 20 HOH HOH . H 7 HOH A 18 518 6 HOH HOH . H 7 HOH A 19 519 19 HOH HOH . H 7 HOH A 20 520 14 HOH HOH . H 7 HOH A 21 521 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 89.26 -56.847 104.304 1 73.07 ? P AMP 402 A 1 HETATM 2 O O1P AMP . . . C 3 88.417 -56.102 103.236 1 71.24 ? O1P AMP 402 A 1 HETATM 3 O O2P AMP . . . C 3 90.747 -56.571 104.296 1 72.24 ? O2P AMP 402 A 1 HETATM 4 O O3P AMP . . . C 3 88.638 -56.523 105.653 1 75.62 ? O3P AMP 402 A 1 HETATM 5 O O5' AMP . . . C 3 89.033 -58.42 104.107 1 73.07 ? O5' AMP 402 A 1 HETATM 6 C C5' AMP . . . C 3 88.259 -58.998 103.042 1 75.71 ? C5' AMP 402 A 1 HETATM 7 C C4' AMP . . . C 3 88.956 -60.283 102.673 1 79.99 ? C4' AMP 402 A 1 HETATM 8 O O4' AMP . . . C 3 89.391 -60.964 103.869 1 81.18 ? O4' AMP 402 A 1 HETATM 9 C C3' AMP . . . C 3 88.132 -61.285 101.867 1 82.47 ? C3' AMP 402 A 1 HETATM 10 O O3' AMP . . . C 3 88.826 -61.854 100.759 1 79.93 ? O3' AMP 402 A 1 HETATM 11 C C2' AMP . . . C 3 87.636 -62.281 102.924 1 86.23 ? C2' AMP 402 A 1 HETATM 12 O O2' AMP . . . C 3 87.564 -63.593 102.368 1 89.14 ? O2' AMP 402 A 1 HETATM 13 C C1' AMP . . . C 3 88.691 -62.178 104.044 1 85.11 ? C1' AMP 402 A 1 HETATM 14 N N9 AMP . . . C 3 88.155 -62.201 105.407 1 87.78 ? N9 AMP 402 A 1 HETATM 15 C C8 AMP . . . C 3 87.157 -61.411 105.915 1 88.66 ? C8 AMP 402 A 1 HETATM 16 N N7 AMP . . . C 3 86.845 -61.677 107.161 1 89.98 ? N7 AMP 402 A 1 HETATM 17 C C5 AMP . . . C 3 87.697 -62.717 107.5 1 89.56 ? C5 AMP 402 A 1 HETATM 18 C C6 AMP . . . C 3 87.846 -63.481 108.678 1 88.63 ? C6 AMP 402 A 1 HETATM 19 N N6 AMP . . . C 3 87.08 -63.331 109.762 1 87.9 ? N6 AMP 402 A 1 HETATM 20 N N1 AMP . . . C 3 88.788 -64.455 108.686 1 88.48 ? N1 AMP 402 A 1 HETATM 21 C C2 AMP . . . C 3 89.522 -64.648 107.585 1 90.22 ? C2 AMP 402 A 1 HETATM 22 N N3 AMP . . . C 3 89.468 -63.997 106.417 1 91.84 ? N3 AMP 402 A 1 HETATM 23 C C4 AMP . . . C 3 88.523 -63.042 106.434 1 90.06 ? C4 AMP 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #