data_6S2Z # _model_server_result.job_id ZbJPBCPspCARsWim28buUg _model_server_result.datetime_utc '2024-11-13 09:36:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6S2Z # _exptl.entry_id 6S2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 907.472 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL B' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S2Z _cell.length_a 86.36 _cell.length_b 118.33 _cell.length_c 38.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 38.55 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 38.55 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 41 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A O PRO 32 A PRO 32 1_555 B MG CHL . A CHL 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? # _chem_comp.formula 'C55 H70 Mg N4 O6 2' _chem_comp.formula_weight 907.472 _chem_comp.id CHL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA CHL sing 70 n n MG NB CHL sing 71 n n MG NC CHL sing 72 n n MG ND CHL sing 73 n n CHA C1A CHL sing 74 n n CHA C4D CHL doub 75 n n CHA CBD CHL sing 76 n n CHB C4A CHL doub 77 n n CHB C1B CHL sing 78 n n CHC C4B CHL sing 79 n n CHC C1C CHL doub 80 n n CHD C4C CHL sing 81 n n CHD C1D CHL doub 82 n n NA C1A CHL doub 83 n n NA C4A CHL sing 84 n n C1A C2A CHL sing 85 n n C2A C3A CHL sing 86 n n C2A CAA CHL sing 87 n n C3A C4A CHL sing 88 n n C3A CMA CHL sing 89 n n CAA CBA CHL sing 90 n n CBA CGA CHL sing 91 n n CGA O1A CHL doub 92 n n CGA O2A CHL sing 93 n n O2A C1 CHL sing 94 n n NB C1B CHL sing 95 n y NB C4B CHL sing 96 n y C1B C2B CHL doub 97 n y C2B C3B CHL sing 98 n y C2B CMB CHL sing 99 n n C3B C4B CHL doub 100 n y C3B CAB CHL sing 101 n n CAB CBB CHL doub 102 n n NC C1C CHL sing 103 n n NC C4C CHL doub 104 n n C1C C2C CHL sing 105 n n C2C C3C CHL doub 106 n n C2C CMC CHL sing 107 n n C3C C4C CHL sing 108 n n C3C CAC CHL sing 109 n n CMC OMC CHL doub 110 n n CAC CBC CHL sing 111 n n ND C1D CHL sing 112 n n ND C4D CHL sing 113 n n C1D C2D CHL sing 114 n n C2D C3D CHL doub 115 n n C2D CMD CHL sing 116 n n C3D C4D CHL sing 117 n n C3D CAD CHL sing 118 n n CAD OBD CHL doub 119 n n CAD CBD CHL sing 120 n n CBD CGD CHL sing 121 n n CGD O1D CHL doub 122 n n CGD O2D CHL sing 123 n n O2D CED CHL sing 124 n n C1 C2 CHL sing 125 n n C2 C3 CHL doub 126 e n C3 C4 CHL sing 127 n n C3 C5 CHL sing 128 n n C5 C6 CHL sing 129 n n C6 C7 CHL sing 130 n n C7 C8 CHL sing 131 n n C8 C9 CHL sing 132 n n C8 C10 CHL sing 133 n n C10 C11 CHL sing 134 n n C11 C12 CHL sing 135 n n C12 C13 CHL sing 136 n n C13 C14 CHL sing 137 n n C13 C15 CHL sing 138 n n C15 C16 CHL sing 139 n n C16 C17 CHL sing 140 n n C17 C18 CHL sing 141 n n C18 C19 CHL sing 142 n n C18 C20 CHL sing 143 n n CHB H1 CHL sing 144 n n CHC H2 CHL sing 145 n n CHD H3 CHL sing 146 n n CMA H4 CHL sing 147 n n CMA H5 CHL sing 148 n n CMA H6 CHL sing 149 n n CAA H7 CHL sing 150 n n CAA H8 CHL sing 151 n n CBA H9 CHL sing 152 n n CBA H10 CHL sing 153 n n CMB H11 CHL sing 154 n n CMB H12 CHL sing 155 n n CMB H13 CHL sing 156 n n CAB H14 CHL sing 157 n n CBB H15 CHL sing 158 n n CBB H16 CHL sing 159 n n CMC H17 CHL sing 160 n n CAC H18 CHL sing 161 n n CAC H19 CHL sing 162 n n CBC H20 CHL sing 163 n n CBC H21 CHL sing 164 n n CBC H22 CHL sing 165 n n CMD H23 CHL sing 166 n n CMD H24 CHL sing 167 n n CMD H25 CHL sing 168 n n CBD H26 CHL sing 169 n n CED H27 CHL sing 170 n n CED H28 CHL sing 171 n n CED H29 CHL sing 172 n n C1 H30 CHL sing 173 n n C1 H31 CHL sing 174 n n C2 H32 CHL sing 175 n n C4 H33 CHL sing 176 n n C4 H34 CHL sing 177 n n C4 H35 CHL sing 178 n n C5 H36 CHL sing 179 n n C5 H37 CHL sing 180 n n C6 H38 CHL sing 181 n n C6 H39 CHL sing 182 n n C7 H40 CHL sing 183 n n C7 H41 CHL sing 184 n n C8 H42 CHL sing 185 n n C9 H43 CHL sing 186 n n C9 H44 CHL sing 187 n n C9 H45 CHL sing 188 n n C10 H46 CHL sing 189 n n C10 H47 CHL sing 190 n n C11 H48 CHL sing 191 n n C11 H49 CHL sing 192 n n C12 H50 CHL sing 193 n n C12 H51 CHL sing 194 n n C13 H52 CHL sing 195 n n C14 H53 CHL sing 196 n n C14 H54 CHL sing 197 n n C14 H55 CHL sing 198 n n C15 H56 CHL sing 199 n n C16 H57 CHL sing 200 n n C17 H58 CHL sing 201 n n C17 H59 CHL sing 202 n n C18 H60 CHL sing 203 n n C19 H61 CHL sing 204 n n C19 H62 CHL sing 205 n n C19 H63 CHL sing 206 n n C20 H64 CHL sing 207 n n C20 H65 CHL sing 208 n n C20 H66 CHL sing 209 n n C2A H67 CHL sing 210 n n C3A H68 CHL sing 211 n n C15 H69 CHL sing 212 n n C16 H70 CHL sing 213 n n # _atom_sites.entry_id 6S2Z _atom_sites.fract_transf_matrix[1][1] 0.011579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CHL A 1 1001 1001 CHL CHL . C 3 HOH A 1 1101 1101 HOH HOH . C 3 HOH A 2 1102 1130 HOH HOH . C 3 HOH A 3 1103 1134 HOH HOH . C 3 HOH A 4 1104 1133 HOH HOH . C 3 HOH A 5 1105 1116 HOH HOH . C 3 HOH A 6 1106 1128 HOH HOH . C 3 HOH A 7 1107 1106 HOH HOH . C 3 HOH A 8 1108 1132 HOH HOH . C 3 HOH A 9 1109 1127 HOH HOH . C 3 HOH A 10 1110 1103 HOH HOH . C 3 HOH A 11 1111 1109 HOH HOH . C 3 HOH A 12 1112 1131 HOH HOH . C 3 HOH A 13 1113 1111 HOH HOH . C 3 HOH A 14 1114 1110 HOH HOH . C 3 HOH A 15 1115 1129 HOH HOH . C 3 HOH A 16 1116 1114 HOH HOH . C 3 HOH A 17 1117 1112 HOH HOH . C 3 HOH A 18 1118 1115 HOH HOH . C 3 HOH A 19 1119 1124 HOH HOH . C 3 HOH A 20 1120 1118 HOH HOH . C 3 HOH A 21 1121 1135 HOH HOH . C 3 HOH A 22 1122 1126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CHL . . . B 2 11.312 3.415 15.292 1 13.46 ? MG CHL 1001 A 1 HETATM 2 C CHA CHL . . . B 2 13.274 3.48 18.06 1 12.07 ? CHA CHL 1001 A 1 HETATM 3 C CHB CHL . . . B 2 8.663 3.899 17.325 1 11.65 ? CHB CHL 1001 A 1 HETATM 4 C CHC CHL . . . B 2 9.255 2.753 12.689 1 13.45 ? CHC CHL 1001 A 1 HETATM 5 C CHD CHL . . . B 2 13.989 2.054 13.481 1 11.41 ? CHD CHL 1001 A 1 HETATM 6 N NA CHL . . . B 2 11.025 3.866 17.237 1 12.03 ? NA CHL 1001 A 1 HETATM 7 C C1A CHL . . . B 2 11.892 3.973 18.135 1 12.51 ? C1A CHL 1001 A 1 HETATM 8 C C2A CHL . . . B 2 11.419 4.528 19.414 1 12.22 ? C2A CHL 1001 A 1 HETATM 9 C C3A CHL . . . B 2 9.942 4.464 19.23 1 12.05 ? C3A CHL 1001 A 1 HETATM 10 C C4A CHL . . . B 2 9.86 4.044 17.832 1 12.09 ? C4A CHL 1001 A 1 HETATM 11 C CMA CHL . . . B 2 9.339 3.415 20.128 1 11.47 ? CMA CHL 1001 A 1 HETATM 12 C CAA CHL . . . B 2 12.03 5.859 19.83 1 12.14 ? CAA CHL 1001 A 1 HETATM 13 C CBA CHL . . . B 2 11.425 6.505 21.05 1 12.8 ? CBA CHL 1001 A 1 HETATM 14 C CGA CHL . . . B 2 11.983 6.137 22.392 1 15.35 ? CGA CHL 1001 A 1 HETATM 15 O O1A CHL . . . B 2 12.926 6.67 22.805 1 13.48 ? O1A CHL 1001 A 1 HETATM 16 O O2A CHL . . . B 2 11.308 5.202 23.219 1 17.71 ? O2A CHL 1001 A 1 HETATM 17 N NB CHL . . . B 2 9.261 3.37 15.041 1 13.38 ? NB CHL 1001 A 1 HETATM 18 C C1B CHL . . . B 2 8.317 3.551 15.951 1 12.99 ? C1B CHL 1001 A 1 HETATM 19 C C2B CHL . . . B 2 6.935 3.393 15.517 1 12.46 ? C2B CHL 1001 A 1 HETATM 20 C C3B CHL . . . B 2 7.143 3.052 14.141 1 12.01 ? C3B CHL 1001 A 1 HETATM 21 C C4B CHL . . . B 2 8.588 3.067 13.957 1 13.53 ? C4B CHL 1001 A 1 HETATM 22 C CMB CHL . . . B 2 5.668 3.529 16.291 1 12.43 ? CMB CHL 1001 A 1 HETATM 23 C CAB CHL . . . B 2 6.124 2.768 13.117 1 12.12 ? CAB CHL 1001 A 1 HETATM 24 C CBB CHL . . . B 2 5.14 1.973 13.304 1 9.88 ? CBB CHL 1001 A 1 HETATM 25 N NC CHL . . . B 2 11.558 2.562 13.414 1 12.95 ? NC CHL 1001 A 1 HETATM 26 C C1C CHL . . . B 2 10.644 2.351 12.497 1 13.37 ? C1C CHL 1001 A 1 HETATM 27 C C2C CHL . . . B 2 11.15 1.735 11.275 1 14.03 ? C2C CHL 1001 A 1 HETATM 28 C C3C CHL . . . B 2 12.534 1.53 11.494 1 12.13 ? C3C CHL 1001 A 1 HETATM 29 C C4C CHL . . . B 2 12.665 2.056 12.843 1 12.57 ? C4C CHL 1001 A 1 HETATM 30 C CMC CHL . . . B 2 10.47 1.341 10.034 1 16.89 ? CMC CHL 1001 A 1 HETATM 31 O OMC CHL . . . B 2 9.328 1.556 9.844 1 21.62 ? OMC CHL 1001 A 1 HETATM 32 C CAC CHL . . . B 2 13.537 0.906 10.574 1 12 ? CAC CHL 1001 A 1 HETATM 33 C CBC CHL . . . B 2 13.557 -0.567 10.747 1 11.74 ? CBC CHL 1001 A 1 HETATM 34 N ND CHL . . . B 2 13.255 2.873 15.602 1 12.13 ? ND CHL 1001 A 1 HETATM 35 C C1D CHL . . . B 2 14.216 2.339 14.891 1 12.02 ? C1D CHL 1001 A 1 HETATM 36 C C2D CHL . . . B 2 15.454 2.119 15.67 1 11.2 ? C2D CHL 1001 A 1 HETATM 37 C C3D CHL . . . B 2 15.011 2.63 16.954 1 11.69 ? C3D CHL 1001 A 1 HETATM 38 C C4D CHL . . . B 2 13.79 3.018 16.815 1 11.53 ? C4D CHL 1001 A 1 HETATM 39 C CMD CHL . . . B 2 16.834 1.621 15.369 1 10.35 ? CMD CHL 1001 A 1 HETATM 40 C CAD CHL . . . B 2 15.441 2.851 18.345 1 12.58 ? CAD CHL 1001 A 1 HETATM 41 O OBD CHL . . . B 2 16.577 2.621 18.796 1 11.77 ? OBD CHL 1001 A 1 HETATM 42 C CBD CHL . . . B 2 14.32 3.427 19.101 1 11.68 ? CBD CHL 1001 A 1 HETATM 43 C CGD CHL . . . B 2 14.011 2.644 20.329 1 14.21 ? CGD CHL 1001 A 1 HETATM 44 O O1D CHL . . . B 2 14.164 3.098 21.395 1 16.25 ? O1D CHL 1001 A 1 HETATM 45 O O2D CHL . . . B 2 13.541 1.325 20.289 1 15.7 ? O2D CHL 1001 A 1 HETATM 46 C CED CHL . . . B 2 13.547 0.54 21.421 1 16.25 ? CED CHL 1001 A 1 HETATM 47 C C1 CHL . . . B 2 11.843 4.148 23.965 1 21.18 ? C1 CHL 1001 A 1 HETATM 48 C C2 CHL . . . B 2 10.68 3.524 24.654 1 22.95 ? C2 CHL 1001 A 1 HETATM 49 C C3 CHL . . . B 2 10.616 2.22 24.889 1 24.08 ? C3 CHL 1001 A 1 HETATM 50 C C4 CHL . . . B 2 11.729 1.347 24.508 1 25.32 ? C4 CHL 1001 A 1 HETATM 51 C C5 CHL . . . B 2 9.442 1.618 25.548 1 22.52 ? C5 CHL 1001 A 1 HETATM 52 C C6 CHL . . . B 2 8.779 0.644 24.613 1 25.8 ? C6 CHL 1001 A 1 HETATM 53 C C7 CHL . . . B 2 8.529 1.166 23.223 1 24.34 ? C7 CHL 1001 A 1 HETATM 54 C C8 CHL . . . B 2 7.881 0.09 22.374 1 26.95 ? C8 CHL 1001 A 1 HETATM 55 C C9 CHL . . . B 2 8.843 -0.526 21.384 1 22.38 ? C9 CHL 1001 A 1 HETATM 56 C C10 CHL . . . B 2 6.634 0.602 21.693 1 25.01 ? C10 CHL 1001 A 1 HETATM 57 C C11 CHL . . . B 2 5.555 0.757 22.707 1 26.52 ? C11 CHL 1001 A 1 HETATM 58 C C12 CHL . . . B 2 4.232 0.778 22.003 1 30.41 ? C12 CHL 1001 A 1 HETATM 59 C C13 CHL . . . B 2 3.144 1.441 22.819 1 30.5 ? C13 CHL 1001 A 1 HETATM 60 C C14 CHL . . . B 2 2.773 0.638 24.038 1 28.49 ? C14 CHL 1001 A 1 HETATM 61 C C15 CHL . . . B 2 1.925 1.643 21.949 1 31.7 ? C15 CHL 1001 A 1 HETATM 62 C C16 CHL . . . B 2 0.955 2.629 22.576 1 32.38 ? C16 CHL 1001 A 1 HETATM 63 C C17 CHL . . . B 2 -0.303 2.81 21.744 1 32.78 ? C17 CHL 1001 A 1 HETATM 64 C C18 CHL . . . B 2 -1.022 4.074 22.153 1 32.56 ? C18 CHL 1001 A 1 HETATM 65 C C19 CHL . . . B 2 -1.59 4.764 20.962 1 33.6 ? C19 CHL 1001 A 1 HETATM 66 C C20 CHL . . . B 2 -2.145 3.715 23.055 1 37.74 ? C20 CHL 1001 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #