data_6S39 # _model_server_result.job_id cgadrH7FWSoq3ScLtFmgOQ _model_server_result.datetime_utc '2024-11-16 15:46:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6S39 # _exptl.entry_id 6S39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.37 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3-azanylpropyl)-4-phenyl-thiophene-2-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S39 _cell.length_a 82.11 _cell.length_b 111.99 _cell.length_c 62.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 5 P LYS 386 1_555 B N TPO 6 P TPO 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 B C TPO 6 P TPO 387 1_555 B N GLU 7 P GLU 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 D CA CA . A CA 302 1_555 E O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? # _chem_comp.formula 'C14 H17 N3 S' _chem_comp.formula_weight 259.37 _chem_comp.id K5Z _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3-azanylpropyl)-4-phenyl-thiophene-2-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 K5Z doub 173 n y C13 C14 K5Z sing 174 n y C12 C11 K5Z sing 175 n y C14 C09 K5Z doub 176 n y N08 C06 K5Z sing 177 n n C11 C10 K5Z doub 178 n y C09 C03 K5Z sing 179 n n C09 C10 K5Z sing 180 n y C04 C03 K5Z sing 181 n y C04 C05 K5Z doub 182 n y C03 C02 K5Z doub 183 n y C06 C05 K5Z sing 184 n n C06 N07 K5Z doub 185 n n C05 S01 K5Z sing 186 n y C02 S01 K5Z sing 187 n y C02 C15 K5Z sing 188 n n C15 C16 K5Z sing 189 n n C17 C16 K5Z sing 190 n n C17 N18 K5Z sing 191 n n C10 H101 K5Z sing 192 n n C13 H131 K5Z sing 193 n n C15 H151 K5Z sing 194 n n C15 H152 K5Z sing 195 n n C17 H172 K5Z sing 196 n n C17 H171 K5Z sing 197 n n C04 H041 K5Z sing 198 n n C11 H111 K5Z sing 199 n n C12 H121 K5Z sing 200 n n C14 H141 K5Z sing 201 n n C16 H161 K5Z sing 202 n n C16 H162 K5Z sing 203 n n N08 H082 K5Z sing 204 n n N07 H071 K5Z sing 205 n n N18 H4 K5Z sing 206 n n N18 H3 K5Z sing 207 n n N08 H081 K5Z sing 208 n n # _atom_sites.entry_id 6S39 _atom_sites.fract_transf_matrix[1][1] 0.012179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K5Z A 1 301 1 K5Z 492 . D 4 CA A 1 302 1 CA CA . E 5 HOH A 1 401 11 HOH HOH . E 5 HOH A 2 402 70 HOH HOH . E 5 HOH A 3 403 9 HOH HOH . E 5 HOH A 4 404 30 HOH HOH . E 5 HOH A 5 405 21 HOH HOH . E 5 HOH A 6 406 67 HOH HOH . E 5 HOH A 7 407 19 HOH HOH . E 5 HOH A 8 408 62 HOH HOH . E 5 HOH A 9 409 48 HOH HOH . E 5 HOH A 10 410 66 HOH HOH . E 5 HOH A 11 411 22 HOH HOH . E 5 HOH A 12 412 4 HOH HOH . E 5 HOH A 13 413 47 HOH HOH . E 5 HOH A 14 414 1 HOH HOH . E 5 HOH A 15 415 74 HOH HOH . E 5 HOH A 16 416 59 HOH HOH . E 5 HOH A 17 417 16 HOH HOH . E 5 HOH A 18 418 29 HOH HOH . E 5 HOH A 19 419 38 HOH HOH . E 5 HOH A 20 420 50 HOH HOH . E 5 HOH A 21 421 34 HOH HOH . E 5 HOH A 22 422 10 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 8 HOH HOH . E 5 HOH A 25 425 69 HOH HOH . E 5 HOH A 26 426 20 HOH HOH . E 5 HOH A 27 427 2 HOH HOH . E 5 HOH A 28 428 45 HOH HOH . E 5 HOH A 29 429 6 HOH HOH . E 5 HOH A 30 430 61 HOH HOH . E 5 HOH A 31 431 41 HOH HOH . E 5 HOH A 32 432 56 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 3 HOH HOH . E 5 HOH A 35 435 13 HOH HOH . E 5 HOH A 36 436 40 HOH HOH . E 5 HOH A 37 437 51 HOH HOH . E 5 HOH A 38 438 46 HOH HOH . E 5 HOH A 39 439 65 HOH HOH . E 5 HOH A 40 440 60 HOH HOH . E 5 HOH A 41 441 42 HOH HOH . E 5 HOH A 42 442 32 HOH HOH . E 5 HOH A 43 443 39 HOH HOH . E 5 HOH A 44 444 54 HOH HOH . E 5 HOH A 45 445 25 HOH HOH . E 5 HOH A 46 446 14 HOH HOH . E 5 HOH A 47 447 76 HOH HOH . E 5 HOH A 48 448 31 HOH HOH . E 5 HOH A 49 449 12 HOH HOH . E 5 HOH A 50 450 18 HOH HOH . E 5 HOH A 51 451 37 HOH HOH . E 5 HOH A 52 452 7 HOH HOH . E 5 HOH A 53 453 68 HOH HOH . E 5 HOH A 54 454 15 HOH HOH . E 5 HOH A 55 455 78 HOH HOH . E 5 HOH A 56 456 36 HOH HOH . E 5 HOH A 57 457 63 HOH HOH . E 5 HOH A 58 458 35 HOH HOH . E 5 HOH A 59 459 44 HOH HOH . E 5 HOH A 60 460 72 HOH HOH . E 5 HOH A 61 461 58 HOH HOH . E 5 HOH A 62 462 24 HOH HOH . E 5 HOH A 63 463 17 HOH HOH . E 5 HOH A 64 464 5 HOH HOH . E 5 HOH A 65 465 75 HOH HOH . E 5 HOH A 66 466 73 HOH HOH . F 5 HOH P 1 401 28 HOH HOH . F 5 HOH P 2 402 26 HOH HOH . F 5 HOH P 3 403 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 K5Z . A . C 3 -19.708 -21.317 -9.182 0.5 11.42 ? C10 K5Z 301 A 1 HETATM 2 C C10 K5Z . B . C 3 -19.594 -21.446 -9.044 0.5 32.4 ? C10 K5Z 301 A 1 HETATM 3 C C13 K5Z . A . C 3 -20.43 -23.698 -7.995 0.5 11.19 ? C13 K5Z 301 A 1 HETATM 4 C C13 K5Z . B . C 3 -20.666 -23.595 -7.817 0.5 31.53 ? C13 K5Z 301 A 1 HETATM 5 C C15 K5Z . A . C 3 -18.706 -21.389 -5.085 0.5 11.43 ? C15 K5Z 301 A 1 HETATM 6 C C15 K5Z . B . C 3 -18.337 -21.187 -5.249 0.5 31.23 ? C15 K5Z 301 A 1 HETATM 7 C C17 K5Z . A . C 3 -16.4 -22.113 -4.41 0.5 11.57 ? C17 K5Z 301 A 1 HETATM 8 C C17 K5Z . B . C 3 -16.928 -19.428 -3.914 0.5 30.68 ? C17 K5Z 301 A 1 HETATM 9 C C02 K5Z . A . C 3 -19.284 -20.161 -5.797 0.5 11.48 ? C02 K5Z 301 A 1 HETATM 10 C C02 K5Z . B . C 3 -19.122 -20.062 -5.94 0.5 32.09 ? C02 K5Z 301 A 1 HETATM 11 C C03 K5Z . A . C 3 -19.86 -20.185 -7.061 0.5 11.26 ? C03 K5Z 301 A 1 HETATM 12 C C03 K5Z . B . C 3 -19.867 -20.165 -7.084 0.5 31.94 ? C03 K5Z 301 A 1 HETATM 13 C C04 K5Z . A . C 3 -20.299 -18.944 -7.503 0.5 11.12 ? C04 K5Z 301 A 1 HETATM 14 C C04 K5Z . B . C 3 -20.482 -18.986 -7.502 0.5 31.16 ? C04 K5Z 301 A 1 HETATM 15 C C05 K5Z . A . C 3 -20.107 -17.881 -6.63 0.5 11.01 ? C05 K5Z 301 A 1 HETATM 16 C C05 K5Z . B . C 3 -20.225 -17.897 -6.69 0.5 30.65 ? C05 K5Z 301 A 1 HETATM 17 C C06 K5Z . A . C 3 -20.489 -16.414 -6.843 0.5 11.04 ? C06 K5Z 301 A 1 HETATM 18 C C06 K5Z . B . C 3 -20.7 -16.455 -6.837 0.5 30.59 ? C06 K5Z 301 A 1 HETATM 19 C C09 K5Z . A . C 3 -19.97 -21.346 -7.818 0.5 11.13 ? C09 K5Z 301 A 1 HETATM 20 C C09 K5Z . B . C 3 -19.998 -21.344 -7.754 0.5 31.52 ? C09 K5Z 301 A 1 HETATM 21 C C11 K5Z . A . C 3 -19.811 -22.474 -9.957 0.5 11.17 ? C11 K5Z 301 A 1 HETATM 22 C C11 K5Z . B . C 3 -19.731 -22.619 -9.78 0.5 31.78 ? C11 K5Z 301 A 1 HETATM 23 C C12 K5Z . A . C 3 -20.18 -23.662 -9.355 0.5 11.17 ? C12 K5Z 301 A 1 HETATM 24 C C12 K5Z . B . C 3 -20.293 -23.667 -9.128 0.5 31.38 ? C12 K5Z 301 A 1 HETATM 25 C C14 K5Z . A . C 3 -20.324 -22.541 -7.224 0.5 11.19 ? C14 K5Z 301 A 1 HETATM 26 C C14 K5Z . B . C 3 -20.517 -22.414 -7.123 0.5 31.29 ? C14 K5Z 301 A 1 HETATM 27 C C16 K5Z . A . C 3 -17.511 -21.103 -4.174 0.5 11.49 ? C16 K5Z 301 A 1 HETATM 28 C C16 K5Z . B . C 3 -17.579 -20.81 -3.957 0.5 31.03 ? C16 K5Z 301 A 1 HETATM 29 N N08 K5Z . A . C 3 -21.292 -16.098 -7.741 0.5 10.81 ? N08 K5Z 301 A 1 HETATM 30 N N08 K5Z . B . C 3 -21.475 -16.14 -7.74 0.5 29.33 ? N08 K5Z 301 A 1 HETATM 31 N N07 K5Z . A . C 3 -19.893 -15.38 -6.005 0.5 10.83 ? N07 K5Z 301 A 1 HETATM 32 N N07 K5Z . B . C 3 -20.171 -15.483 -5.897 0.5 29.98 ? N07 K5Z 301 A 1 HETATM 33 N N18 K5Z . A . C 3 -15.154 -21.416 -4.673 0.5 11.56 ? N18 K5Z 301 A 1 HETATM 34 N N18 K5Z . B . C 3 -16.405 -19.024 -2.59 0.5 30.1 ? N18 K5Z 301 A 1 HETATM 35 S S01 K5Z . A . C 3 -19.343 -18.519 -5.231 0.5 11.22 ? S01 K5Z 301 A 1 HETATM 36 S S01 K5Z . B . C 3 -19.25 -18.438 -5.405 0.5 32.09 ? S01 K5Z 301 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #