data_6S3B # _model_server_result.job_id bNjX9UiDWqY5SIeeCYPD7w _model_server_result.datetime_utc '2024-11-05 12:47:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 6S3B # _exptl.entry_id 6S3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S3B _cell.length_a 45.39 _cell.length_b 69.219 _cell.length_c 92.333 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 81 A ILE 81 1_555 G NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc2 G NA NA . A NA 605 1_555 B O LEU 151 B LEU 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 104 n n C1 C2 EDO sing 105 n n C1 H11 EDO sing 106 n n C1 H12 EDO sing 107 n n O1 HO1 EDO sing 108 n n C2 O2 EDO sing 109 n n C2 H21 EDO sing 110 n n C2 H22 EDO sing 111 n n O2 HO2 EDO sing 112 n n # _atom_sites.entry_id 6S3B _atom_sites.fract_transf_matrix[1][1] 0.022031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEZ A 1 601 200 BEZ BEZ . D 3 ACT A 1 602 201 ACT ACT . E 4 EDO A 1 603 223 EDO EDO . F 4 EDO A 1 604 224 EDO EDO . G 5 NA A 1 605 184 NA NA . H 6 HOH A 1 701 25 HOH HOH . H 6 HOH A 2 702 21 HOH HOH . H 6 HOH A 3 703 80 HOH HOH . H 6 HOH A 4 704 19 HOH HOH . H 6 HOH A 5 705 78 HOH HOH . H 6 HOH A 6 706 15 HOH HOH . H 6 HOH A 7 707 10 HOH HOH . H 6 HOH A 8 708 13 HOH HOH . H 6 HOH A 9 709 86 HOH HOH . H 6 HOH A 10 710 72 HOH HOH . H 6 HOH A 11 711 22 HOH HOH . H 6 HOH A 12 712 6 HOH HOH . H 6 HOH A 13 713 5 HOH HOH . H 6 HOH A 14 714 9 HOH HOH . H 6 HOH A 15 715 1 HOH HOH . H 6 HOH A 16 716 8 HOH HOH . H 6 HOH A 17 717 3 HOH HOH . H 6 HOH A 18 718 4 HOH HOH . H 6 HOH A 19 719 2 HOH HOH . H 6 HOH A 20 720 7 HOH HOH . H 6 HOH A 21 721 11 HOH HOH . H 6 HOH A 22 722 24 HOH HOH . H 6 HOH A 23 723 18 HOH HOH . H 6 HOH A 24 724 26 HOH HOH . H 6 HOH A 25 725 12 HOH HOH . H 6 HOH A 26 726 68 HOH HOH . H 6 HOH A 27 727 16 HOH HOH . H 6 HOH A 28 728 75 HOH HOH . H 6 HOH A 29 729 23 HOH HOH . H 6 HOH A 30 730 14 HOH HOH . H 6 HOH A 31 731 69 HOH HOH . H 6 HOH A 32 732 73 HOH HOH . H 6 HOH A 33 733 77 HOH HOH . H 6 HOH A 34 734 17 HOH HOH . H 6 HOH A 35 735 20 HOH HOH . I 6 HOH B 1 601 58 HOH HOH . I 6 HOH B 2 602 44 HOH HOH . I 6 HOH B 3 603 28 HOH HOH . I 6 HOH B 4 604 74 HOH HOH . I 6 HOH B 5 605 71 HOH HOH . I 6 HOH B 6 606 38 HOH HOH . I 6 HOH B 7 607 27 HOH HOH . I 6 HOH B 8 608 85 HOH HOH . I 6 HOH B 9 609 53 HOH HOH . I 6 HOH B 10 610 81 HOH HOH . I 6 HOH B 11 611 37 HOH HOH . I 6 HOH B 12 612 33 HOH HOH . I 6 HOH B 13 613 32 HOH HOH . I 6 HOH B 14 614 30 HOH HOH . I 6 HOH B 15 615 61 HOH HOH . I 6 HOH B 16 616 50 HOH HOH . I 6 HOH B 17 617 40 HOH HOH . I 6 HOH B 18 618 43 HOH HOH . I 6 HOH B 19 619 56 HOH HOH . I 6 HOH B 20 620 34 HOH HOH . I 6 HOH B 21 621 70 HOH HOH . I 6 HOH B 22 622 52 HOH HOH . I 6 HOH B 23 623 36 HOH HOH . I 6 HOH B 24 624 49 HOH HOH . I 6 HOH B 25 625 48 HOH HOH . I 6 HOH B 26 626 39 HOH HOH . I 6 HOH B 27 627 45 HOH HOH . I 6 HOH B 28 628 31 HOH HOH . I 6 HOH B 29 629 35 HOH HOH . I 6 HOH B 30 630 54 HOH HOH . I 6 HOH B 31 631 76 HOH HOH . I 6 HOH B 32 632 82 HOH HOH . I 6 HOH B 33 633 29 HOH HOH . I 6 HOH B 34 634 62 HOH HOH . I 6 HOH B 35 635 46 HOH HOH . I 6 HOH B 36 636 66 HOH HOH . I 6 HOH B 37 637 41 HOH HOH . I 6 HOH B 38 638 84 HOH HOH . I 6 HOH B 39 639 57 HOH HOH . I 6 HOH B 40 640 79 HOH HOH . I 6 HOH B 41 641 59 HOH HOH . I 6 HOH B 42 642 65 HOH HOH . I 6 HOH B 43 643 51 HOH HOH . I 6 HOH B 44 644 60 HOH HOH . I 6 HOH B 45 645 42 HOH HOH . I 6 HOH B 46 646 63 HOH HOH . I 6 HOH B 47 647 47 HOH HOH . I 6 HOH B 48 648 83 HOH HOH . I 6 HOH B 49 649 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 26.898 48.551 46.28 1 64.18 ? C1 EDO 604 A 1 HETATM 2 O O1 EDO . . . F 4 26.29 49.787 46.708 1 65.36 ? O1 EDO 604 A 1 HETATM 3 C C2 EDO . . . F 4 25.843 47.64 45.676 1 68 ? C2 EDO 604 A 1 HETATM 4 O O2 EDO . . . F 4 25.928 46.31 46.203 1 71.47 ? O2 EDO 604 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #