data_6S3F # _model_server_result.job_id LJusVGfLEeJBi6FtYB0z5Q _model_server_result.datetime_utc '2025-03-05 22:05:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":104}' # _entry.id 6S3F # _exptl.entry_id 6S3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S3F _cell.length_a 108.07 _cell.length_b 108.07 _cell.length_c 43.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 6 1_555 B SG CYS 16 B CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? disulf ? disulf2 A SG CYS 8 A CYS 7 1_555 A SG CYS 56 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf3 A SG CYS 18 A CYS 17 1_555 B SG CYS 3 B CYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? disulf ? disulf4 A SG CYS 20 A CYS 19 1_555 A SG CYS 63 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 100 n n C1 C2 GOL sing 101 n n C1 H11 GOL sing 102 n n C1 H12 GOL sing 103 n n O1 HO1 GOL sing 104 n n C2 O2 GOL sing 105 n n C2 C3 GOL sing 106 n n C2 H2 GOL sing 107 n n O2 HO2 GOL sing 108 n n C3 O3 GOL sing 109 n n C3 H31 GOL sing 110 n n C3 H32 GOL sing 111 n n O3 HO3 GOL sing 112 n n # _atom_sites.entry_id 6S3F _atom_sites.fract_transf_matrix[1][1] 0.009253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 101 1 CL CL . D 4 FMT A 1 102 1 FMT FMT . E 4 FMT A 1 103 1 FMT FMT . F 5 GOL A 1 104 1 GOL GOL . G 4 FMT B 1 101 1 FMT FMT . H 4 FMT B 1 102 1 FMT FMT . I 6 HOH A 1 201 43 HOH HOH . I 6 HOH A 2 202 49 HOH HOH . I 6 HOH A 3 203 12 HOH HOH . I 6 HOH A 4 204 29 HOH HOH . I 6 HOH A 5 205 7 HOH HOH . I 6 HOH A 6 206 16 HOH HOH . I 6 HOH A 7 207 8 HOH HOH . I 6 HOH A 8 208 17 HOH HOH . I 6 HOH A 9 209 52 HOH HOH . I 6 HOH A 10 210 11 HOH HOH . I 6 HOH A 11 211 15 HOH HOH . I 6 HOH A 12 212 39 HOH HOH . I 6 HOH A 13 213 31 HOH HOH . I 6 HOH A 14 214 6 HOH HOH . I 6 HOH A 15 215 32 HOH HOH . I 6 HOH A 16 216 24 HOH HOH . I 6 HOH A 17 217 14 HOH HOH . I 6 HOH A 18 218 26 HOH HOH . I 6 HOH A 19 219 51 HOH HOH . I 6 HOH A 20 220 38 HOH HOH . I 6 HOH A 21 221 35 HOH HOH . I 6 HOH A 22 222 33 HOH HOH . I 6 HOH A 23 223 9 HOH HOH . I 6 HOH A 24 224 20 HOH HOH . I 6 HOH A 25 225 44 HOH HOH . I 6 HOH A 26 226 4 HOH HOH . I 6 HOH A 27 227 5 HOH HOH . I 6 HOH A 28 228 34 HOH HOH . I 6 HOH A 29 229 28 HOH HOH . I 6 HOH A 30 230 18 HOH HOH . I 6 HOH A 31 231 10 HOH HOH . I 6 HOH A 32 232 45 HOH HOH . I 6 HOH A 33 233 47 HOH HOH . I 6 HOH A 34 234 30 HOH HOH . I 6 HOH A 35 235 46 HOH HOH . J 6 HOH B 1 201 13 HOH HOH . J 6 HOH B 2 202 1 HOH HOH . J 6 HOH B 3 203 21 HOH HOH . J 6 HOH B 4 204 2 HOH HOH . J 6 HOH B 5 205 48 HOH HOH . J 6 HOH B 6 206 23 HOH HOH . J 6 HOH B 7 207 19 HOH HOH . J 6 HOH B 8 208 3 HOH HOH . J 6 HOH B 9 209 25 HOH HOH . J 6 HOH B 10 210 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 98.372 32.592 10.839 1 69.88 ? C1 GOL 104 A 1 HETATM 2 O O1 GOL . . . F 5 98.442 31.291 11.424 1 54.01 ? O1 GOL 104 A 1 HETATM 3 C C2 GOL . . . F 5 97.24 33.358 11.455 1 67.79 ? C2 GOL 104 A 1 HETATM 4 O O2 GOL . . . F 5 97.671 33.516 12.815 1 75.42 ? O2 GOL 104 A 1 HETATM 5 C C3 GOL . . . F 5 95.912 32.608 11.268 1 70.39 ? C3 GOL 104 A 1 HETATM 6 O O3 GOL . . . F 5 95.872 31.775 10.076 1 65.59 ? O3 GOL 104 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #