data_6S3M # _model_server_result.job_id La61bSMkLtxzLJ2sEpSoow _model_server_result.datetime_utc '2024-11-15 03:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 6S3M # _exptl.entry_id 6S3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S3M _cell.length_a 87.735 _cell.length_b 101.974 _cell.length_c 250.925 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K,M 1 1 B,D,H,I,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 34 A LYS 97 1_555 E O1B ADP . A ADP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A OG1 THR 35 A THR 98 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 E O2B ADP . A ADP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc3 E O3B ADP . A ADP 1001 1_555 G AL ALF . A ALF 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc4 F MG MG . A MG 1002 1_555 G F2 ALF . A ALF 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 F MG MG . A MG 1002 1_555 G F4 ALF . A ALF 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc6 F MG MG . A MG 1002 1_555 K O HOH . A HOH 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc7 F MG MG . A MG 1002 1_555 K O HOH . A HOH 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 F MG MG . A MG 1002 1_555 K O HOH . A HOH 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc9 B OG1 THR 35 B THR 98 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? metalc ? metalc10 H O3B ADP . B ADP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc11 H O1B ADP . B ADP 1001 1_555 J AL ALF . B ALF 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 I MG MG . B MG 1002 1_555 J F2 ALF . B ALF 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc13 I MG MG . B MG 1002 1_555 L O HOH . B HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc14 I MG MG . B MG 1002 1_555 L O HOH . B HOH 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc15 I MG MG . B MG 1002 1_555 L O HOH . B HOH 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S3M _atom_sites.fract_transf_matrix[1][1] 0.011398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 1001 1001 ADP ADP . F 4 MG A 1 1002 1002 MG MG . G 5 ALF A 1 1003 1003 ALF ALF . H 3 ADP B 1 1001 1001 ADP ADP . I 4 MG B 1 1002 1002 MG MG . J 5 ALF B 1 1003 1003 ALF ALF . K 6 HOH A 1 1101 240 HOH HOH . K 6 HOH A 2 1102 206 HOH HOH . K 6 HOH A 3 1103 205 HOH HOH . K 6 HOH A 4 1104 204 HOH HOH . K 6 HOH A 5 1105 17 HOH HOH . K 6 HOH A 6 1106 185 HOH HOH . K 6 HOH A 7 1107 134 HOH HOH . K 6 HOH A 8 1108 166 HOH HOH . K 6 HOH A 9 1109 239 HOH HOH . K 6 HOH A 10 1110 20 HOH HOH . K 6 HOH A 11 1111 11 HOH HOH . K 6 HOH A 12 1112 219 HOH HOH . K 6 HOH A 13 1113 116 HOH HOH . K 6 HOH A 14 1114 167 HOH HOH . K 6 HOH A 15 1115 122 HOH HOH . K 6 HOH A 16 1116 235 HOH HOH . K 6 HOH A 17 1117 193 HOH HOH . K 6 HOH A 18 1118 102 HOH HOH . K 6 HOH A 19 1119 186 HOH HOH . K 6 HOH A 20 1120 231 HOH HOH . K 6 HOH A 21 1121 31 HOH HOH . K 6 HOH A 22 1122 44 HOH HOH . K 6 HOH A 23 1123 146 HOH HOH . K 6 HOH A 24 1124 130 HOH HOH . K 6 HOH A 25 1125 2 HOH HOH . K 6 HOH A 26 1126 38 HOH HOH . K 6 HOH A 27 1127 26 HOH HOH . K 6 HOH A 28 1128 58 HOH HOH . K 6 HOH A 29 1129 70 HOH HOH . K 6 HOH A 30 1130 173 HOH HOH . K 6 HOH A 31 1131 135 HOH HOH . K 6 HOH A 32 1132 113 HOH HOH . K 6 HOH A 33 1133 67 HOH HOH . K 6 HOH A 34 1134 64 HOH HOH . K 6 HOH A 35 1135 120 HOH HOH . K 6 HOH A 36 1136 69 HOH HOH . K 6 HOH A 37 1137 24 HOH HOH . K 6 HOH A 38 1138 126 HOH HOH . K 6 HOH A 39 1139 169 HOH HOH . K 6 HOH A 40 1140 14 HOH HOH . K 6 HOH A 41 1141 148 HOH HOH . K 6 HOH A 42 1142 63 HOH HOH . K 6 HOH A 43 1143 12 HOH HOH . K 6 HOH A 44 1144 123 HOH HOH . K 6 HOH A 45 1145 76 HOH HOH . K 6 HOH A 46 1146 29 HOH HOH . K 6 HOH A 47 1147 236 HOH HOH . K 6 HOH A 48 1148 179 HOH HOH . K 6 HOH A 49 1149 9 HOH HOH . K 6 HOH A 50 1150 107 HOH HOH . K 6 HOH A 51 1151 4 HOH HOH . K 6 HOH A 52 1152 7 HOH HOH . K 6 HOH A 53 1153 36 HOH HOH . K 6 HOH A 54 1154 112 HOH HOH . K 6 HOH A 55 1155 22 HOH HOH . K 6 HOH A 56 1156 47 HOH HOH . K 6 HOH A 57 1157 178 HOH HOH . K 6 HOH A 58 1158 111 HOH HOH . K 6 HOH A 59 1159 226 HOH HOH . K 6 HOH A 60 1160 150 HOH HOH . K 6 HOH A 61 1161 5 HOH HOH . K 6 HOH A 62 1162 160 HOH HOH . K 6 HOH A 63 1163 49 HOH HOH . K 6 HOH A 64 1164 86 HOH HOH . K 6 HOH A 65 1165 93 HOH HOH . K 6 HOH A 66 1166 234 HOH HOH . K 6 HOH A 67 1167 151 HOH HOH . K 6 HOH A 68 1168 8 HOH HOH . K 6 HOH A 69 1169 27 HOH HOH . K 6 HOH A 70 1170 145 HOH HOH . K 6 HOH A 71 1171 114 HOH HOH . K 6 HOH A 72 1172 66 HOH HOH . K 6 HOH A 73 1173 85 HOH HOH . K 6 HOH A 74 1174 65 HOH HOH . K 6 HOH A 75 1175 89 HOH HOH . K 6 HOH A 76 1176 60 HOH HOH . K 6 HOH A 77 1177 242 HOH HOH . K 6 HOH A 78 1178 32 HOH HOH . K 6 HOH A 79 1179 96 HOH HOH . K 6 HOH A 80 1180 54 HOH HOH . K 6 HOH A 81 1181 55 HOH HOH . K 6 HOH A 82 1182 16 HOH HOH . K 6 HOH A 83 1183 94 HOH HOH . K 6 HOH A 84 1184 104 HOH HOH . K 6 HOH A 85 1185 3 HOH HOH . K 6 HOH A 86 1186 115 HOH HOH . K 6 HOH A 87 1187 201 HOH HOH . K 6 HOH A 88 1188 46 HOH HOH . K 6 HOH A 89 1189 18 HOH HOH . K 6 HOH A 90 1190 68 HOH HOH . K 6 HOH A 91 1191 13 HOH HOH . K 6 HOH A 92 1192 196 HOH HOH . K 6 HOH A 93 1193 158 HOH HOH . K 6 HOH A 94 1194 136 HOH HOH . K 6 HOH A 95 1195 50 HOH HOH . K 6 HOH A 96 1196 168 HOH HOH . K 6 HOH A 97 1197 117 HOH HOH . K 6 HOH A 98 1198 131 HOH HOH . K 6 HOH A 99 1199 109 HOH HOH . K 6 HOH A 100 1200 59 HOH HOH . K 6 HOH A 101 1201 157 HOH HOH . K 6 HOH A 102 1202 99 HOH HOH . K 6 HOH A 103 1203 106 HOH HOH . K 6 HOH A 104 1204 21 HOH HOH . K 6 HOH A 105 1205 23 HOH HOH . K 6 HOH A 106 1206 227 HOH HOH . K 6 HOH A 107 1207 53 HOH HOH . K 6 HOH A 108 1208 88 HOH HOH . K 6 HOH A 109 1209 97 HOH HOH . K 6 HOH A 110 1210 33 HOH HOH . K 6 HOH A 111 1211 197 HOH HOH . K 6 HOH A 112 1212 121 HOH HOH . K 6 HOH A 113 1213 43 HOH HOH . K 6 HOH A 114 1214 233 HOH HOH . K 6 HOH A 115 1215 156 HOH HOH . K 6 HOH A 116 1216 25 HOH HOH . K 6 HOH A 117 1217 92 HOH HOH . K 6 HOH A 118 1218 41 HOH HOH . K 6 HOH A 119 1219 48 HOH HOH . K 6 HOH A 120 1220 34 HOH HOH . K 6 HOH A 121 1221 15 HOH HOH . K 6 HOH A 122 1222 214 HOH HOH . K 6 HOH A 123 1223 221 HOH HOH . K 6 HOH A 124 1224 225 HOH HOH . K 6 HOH A 125 1225 98 HOH HOH . K 6 HOH A 126 1226 199 HOH HOH . K 6 HOH A 127 1227 6 HOH HOH . K 6 HOH A 128 1228 232 HOH HOH . K 6 HOH A 129 1229 163 HOH HOH . K 6 HOH A 130 1230 154 HOH HOH . K 6 HOH A 131 1231 155 HOH HOH . K 6 HOH A 132 1232 82 HOH HOH . K 6 HOH A 133 1233 127 HOH HOH . K 6 HOH A 134 1234 56 HOH HOH . K 6 HOH A 135 1235 230 HOH HOH . K 6 HOH A 136 1236 187 HOH HOH . K 6 HOH A 137 1237 142 HOH HOH . K 6 HOH A 138 1238 203 HOH HOH . K 6 HOH A 139 1239 176 HOH HOH . K 6 HOH A 140 1240 182 HOH HOH . K 6 HOH A 141 1241 75 HOH HOH . K 6 HOH A 142 1242 78 HOH HOH . K 6 HOH A 143 1243 213 HOH HOH . K 6 HOH A 144 1244 229 HOH HOH . K 6 HOH A 145 1245 171 HOH HOH . K 6 HOH A 146 1246 210 HOH HOH . K 6 HOH A 147 1247 170 HOH HOH . K 6 HOH A 148 1248 128 HOH HOH . K 6 HOH A 149 1249 141 HOH HOH . K 6 HOH A 150 1250 164 HOH HOH . K 6 HOH A 151 1251 110 HOH HOH . K 6 HOH A 152 1252 243 HOH HOH . L 6 HOH B 1 1101 244 HOH HOH . L 6 HOH B 2 1102 198 HOH HOH . L 6 HOH B 3 1103 192 HOH HOH . L 6 HOH B 4 1104 223 HOH HOH . L 6 HOH B 5 1105 209 HOH HOH . L 6 HOH B 6 1106 95 HOH HOH . L 6 HOH B 7 1107 103 HOH HOH . L 6 HOH B 8 1108 238 HOH HOH . L 6 HOH B 9 1109 144 HOH HOH . L 6 HOH B 10 1110 1 HOH HOH . L 6 HOH B 11 1111 237 HOH HOH . L 6 HOH B 12 1112 133 HOH HOH . L 6 HOH B 13 1113 217 HOH HOH . L 6 HOH B 14 1114 220 HOH HOH . L 6 HOH B 15 1115 37 HOH HOH . L 6 HOH B 16 1116 72 HOH HOH . L 6 HOH B 17 1117 19 HOH HOH . L 6 HOH B 18 1118 137 HOH HOH . L 6 HOH B 19 1119 212 HOH HOH . L 6 HOH B 20 1120 195 HOH HOH . L 6 HOH B 21 1121 138 HOH HOH . L 6 HOH B 22 1122 184 HOH HOH . L 6 HOH B 23 1123 188 HOH HOH . L 6 HOH B 24 1124 174 HOH HOH . L 6 HOH B 25 1125 180 HOH HOH . L 6 HOH B 26 1126 190 HOH HOH . L 6 HOH B 27 1127 162 HOH HOH . L 6 HOH B 28 1128 245 HOH HOH . L 6 HOH B 29 1129 215 HOH HOH . L 6 HOH B 30 1130 83 HOH HOH . L 6 HOH B 31 1131 108 HOH HOH . L 6 HOH B 32 1132 200 HOH HOH . L 6 HOH B 33 1133 74 HOH HOH . L 6 HOH B 34 1134 105 HOH HOH . L 6 HOH B 35 1135 79 HOH HOH . L 6 HOH B 36 1136 39 HOH HOH . L 6 HOH B 37 1137 241 HOH HOH . L 6 HOH B 38 1138 52 HOH HOH . L 6 HOH B 39 1139 100 HOH HOH . L 6 HOH B 40 1140 177 HOH HOH . L 6 HOH B 41 1141 45 HOH HOH . L 6 HOH B 42 1142 181 HOH HOH . L 6 HOH B 43 1143 194 HOH HOH . L 6 HOH B 44 1144 153 HOH HOH . L 6 HOH B 45 1145 165 HOH HOH . L 6 HOH B 46 1146 51 HOH HOH . L 6 HOH B 47 1147 28 HOH HOH . L 6 HOH B 48 1148 118 HOH HOH . L 6 HOH B 49 1149 84 HOH HOH . L 6 HOH B 50 1150 152 HOH HOH . L 6 HOH B 51 1151 207 HOH HOH . L 6 HOH B 52 1152 71 HOH HOH . L 6 HOH B 53 1153 40 HOH HOH . L 6 HOH B 54 1154 124 HOH HOH . L 6 HOH B 55 1155 35 HOH HOH . L 6 HOH B 56 1156 57 HOH HOH . L 6 HOH B 57 1157 149 HOH HOH . L 6 HOH B 58 1158 211 HOH HOH . L 6 HOH B 59 1159 161 HOH HOH . L 6 HOH B 60 1160 77 HOH HOH . L 6 HOH B 61 1161 90 HOH HOH . L 6 HOH B 62 1162 228 HOH HOH . L 6 HOH B 63 1163 224 HOH HOH . L 6 HOH B 64 1164 143 HOH HOH . L 6 HOH B 65 1165 147 HOH HOH . L 6 HOH B 66 1166 222 HOH HOH . L 6 HOH B 67 1167 125 HOH HOH . L 6 HOH B 68 1168 42 HOH HOH . L 6 HOH B 69 1169 62 HOH HOH . L 6 HOH B 70 1170 101 HOH HOH . L 6 HOH B 71 1171 189 HOH HOH . L 6 HOH B 72 1172 216 HOH HOH . L 6 HOH B 73 1173 91 HOH HOH . L 6 HOH B 74 1174 183 HOH HOH . L 6 HOH B 75 1175 129 HOH HOH . L 6 HOH B 76 1176 172 HOH HOH . L 6 HOH B 77 1177 159 HOH HOH . L 6 HOH B 78 1178 175 HOH HOH . L 6 HOH B 79 1179 208 HOH HOH . L 6 HOH B 80 1180 218 HOH HOH . L 6 HOH B 81 1181 191 HOH HOH . L 6 HOH B 82 1182 139 HOH HOH . M 6 HOH C 1 101 80 HOH HOH . M 6 HOH C 2 102 119 HOH HOH . M 6 HOH C 3 103 61 HOH HOH . M 6 HOH C 4 104 10 HOH HOH . M 6 HOH C 5 105 87 HOH HOH . M 6 HOH C 6 106 81 HOH HOH . N 6 HOH D 1 101 132 HOH HOH . N 6 HOH D 2 102 202 HOH HOH . N 6 HOH D 3 103 140 HOH HOH . N 6 HOH D 4 104 30 HOH HOH . N 6 HOH D 5 105 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 48.248 _atom_site.Cartn_y -22.645 _atom_site.Cartn_z -6.497 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #