data_6S4A
#
_model_server_result.job_id            IF_XhBHwOVTuM1pNUdUVXA 
_model_server_result.datetime_utc      '2024-11-06 22:41:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s4a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":407}' 
#
_entry.id    6S4A 
#
_exptl.entry_id    6S4A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6S4A 
_cell.length_a            115.068 
_cell.length_b            115.068 
_cell.length_c            113.549 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S4A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 290 n n 
C1 H11 MPD sing 291 n n 
C1 H12 MPD sing 292 n n 
C1 H13 MPD sing 293 n n 
C2 O2 MPD sing 294 n n 
C2 CM MPD sing 295 n n 
C2 C3 MPD sing 296 n n 
O2 HO2 MPD sing 297 n n 
CM HM1 MPD sing 298 n n 
CM HM2 MPD sing 299 n n 
CM HM3 MPD sing 300 n n 
C3 C4 MPD sing 301 n n 
C3 H31 MPD sing 302 n n 
C3 H32 MPD sing 303 n n 
C4 O4 MPD sing 304 n n 
C4 C5 MPD sing 305 n n 
C4 H4 MPD sing 306 n n 
O4 HO4 MPD sing 307 n n 
C5 H51 MPD sing 308 n n 
C5 H52 MPD sing 309 n n 
C5 H53 MPD sing 310 n n 
#
_atom_sites.entry_id                     6S4A 
_atom_sites.fract_transf_matrix[1][1]    0.008691 
_atom_sites.fract_transf_matrix[1][2]    0.005017 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008807 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 KUK A 1 401 1 KUK LIG . 
D 3 PO4 A 1 402 1 PO4 PO4 . 
E 3 PO4 A 1 403 4 PO4 PO4 . 
F 3 PO4 A 1 404 5 PO4 PO4 . 
G 4 NAD A 1 405 1 NAD NAD . 
H 5 MPD A 1 406 1 MPD MPD . 
I 5 MPD A 1 407 2 MPD MPD . 
J 5 MPD A 1 408 3 MPD MPD . 
K 2 KUK B 1 401 2 KUK LIG . 
L 3 PO4 B 1 402 2 PO4 PO4 . 
M 3 PO4 B 1 403 3 PO4 PO4 . 
N 3 PO4 B 1 404 6 PO4 PO4 . 
O 4 NAD B 1 405 2 NAD NAD . 
P 5 MPD B 1 406 4 MPD MPD . 
Q 5 MPD B 1 407 5 MPD MPD . 
R 5 MPD B 1 408 6 MPD MPD . 
S 5 MPD B 1 409 7 MPD MPD . 
T 6 HOH A 1 501 148 HOH HOH . 
T 6 HOH A 2 502 150 HOH HOH . 
T 6 HOH A 3 503 208 HOH HOH . 
T 6 HOH A 4 504 38 HOH HOH . 
T 6 HOH A 5 505 199 HOH HOH . 
T 6 HOH A 6 506 147 HOH HOH . 
T 6 HOH A 7 507 15 HOH HOH . 
T 6 HOH A 8 508 71 HOH HOH . 
T 6 HOH A 9 509 89 HOH HOH . 
T 6 HOH A 10 510 14 HOH HOH . 
T 6 HOH A 11 511 54 HOH HOH . 
T 6 HOH A 12 512 4 HOH HOH . 
T 6 HOH A 13 513 34 HOH HOH . 
T 6 HOH A 14 514 2 HOH HOH . 
T 6 HOH A 15 515 165 HOH HOH . 
T 6 HOH A 16 516 60 HOH HOH . 
T 6 HOH A 17 517 81 HOH HOH . 
T 6 HOH A 18 518 64 HOH HOH . 
T 6 HOH A 19 519 35 HOH HOH . 
T 6 HOH A 20 520 140 HOH HOH . 
T 6 HOH A 21 521 51 HOH HOH . 
T 6 HOH A 22 522 115 HOH HOH . 
T 6 HOH A 23 523 176 HOH HOH . 
T 6 HOH A 24 524 213 HOH HOH . 
T 6 HOH A 25 525 82 HOH HOH . 
T 6 HOH A 26 526 141 HOH HOH . 
T 6 HOH A 27 527 120 HOH HOH . 
T 6 HOH A 28 528 23 HOH HOH . 
T 6 HOH A 29 529 167 HOH HOH . 
T 6 HOH A 30 530 22 HOH HOH . 
T 6 HOH A 31 531 93 HOH HOH . 
T 6 HOH A 32 532 87 HOH HOH . 
T 6 HOH A 33 533 125 HOH HOH . 
T 6 HOH A 34 534 32 HOH HOH . 
T 6 HOH A 35 535 56 HOH HOH . 
T 6 HOH A 36 536 134 HOH HOH . 
T 6 HOH A 37 537 149 HOH HOH . 
T 6 HOH A 38 538 153 HOH HOH . 
T 6 HOH A 39 539 135 HOH HOH . 
T 6 HOH A 40 540 90 HOH HOH . 
T 6 HOH A 41 541 204 HOH HOH . 
T 6 HOH A 42 542 111 HOH HOH . 
T 6 HOH A 43 543 171 HOH HOH . 
T 6 HOH A 44 544 67 HOH HOH . 
T 6 HOH A 45 545 209 HOH HOH . 
T 6 HOH A 46 546 1 HOH HOH . 
T 6 HOH A 47 547 83 HOH HOH . 
T 6 HOH A 48 548 29 HOH HOH . 
T 6 HOH A 49 549 117 HOH HOH . 
T 6 HOH A 50 550 68 HOH HOH . 
T 6 HOH A 51 551 126 HOH HOH . 
T 6 HOH A 52 552 12 HOH HOH . 
T 6 HOH A 53 553 110 HOH HOH . 
T 6 HOH A 54 554 220 HOH HOH . 
T 6 HOH A 55 555 143 HOH HOH . 
T 6 HOH A 56 556 5 HOH HOH . 
T 6 HOH A 57 557 146 HOH HOH . 
T 6 HOH A 58 558 139 HOH HOH . 
T 6 HOH A 59 559 114 HOH HOH . 
T 6 HOH A 60 560 158 HOH HOH . 
T 6 HOH A 61 561 151 HOH HOH . 
T 6 HOH A 62 562 206 HOH HOH . 
T 6 HOH A 63 563 28 HOH HOH . 
T 6 HOH A 64 564 50 HOH HOH . 
T 6 HOH A 65 565 107 HOH HOH . 
T 6 HOH A 66 566 187 HOH HOH . 
T 6 HOH A 67 567 17 HOH HOH . 
T 6 HOH A 68 568 80 HOH HOH . 
T 6 HOH A 69 569 47 HOH HOH . 
T 6 HOH A 70 570 19 HOH HOH . 
T 6 HOH A 71 571 59 HOH HOH . 
T 6 HOH A 72 572 40 HOH HOH . 
T 6 HOH A 73 573 13 HOH HOH . 
T 6 HOH A 74 574 7 HOH HOH . 
T 6 HOH A 75 575 9 HOH HOH . 
T 6 HOH A 76 576 62 HOH HOH . 
T 6 HOH A 77 577 144 HOH HOH . 
T 6 HOH A 78 578 184 HOH HOH . 
T 6 HOH A 79 579 119 HOH HOH . 
T 6 HOH A 80 580 192 HOH HOH . 
T 6 HOH A 81 581 219 HOH HOH . 
T 6 HOH A 82 582 52 HOH HOH . 
T 6 HOH A 83 583 72 HOH HOH . 
T 6 HOH A 84 584 177 HOH HOH . 
T 6 HOH A 85 585 84 HOH HOH . 
T 6 HOH A 86 586 66 HOH HOH . 
T 6 HOH A 87 587 44 HOH HOH . 
T 6 HOH A 88 588 183 HOH HOH . 
T 6 HOH A 89 589 77 HOH HOH . 
T 6 HOH A 90 590 226 HOH HOH . 
T 6 HOH A 91 591 61 HOH HOH . 
T 6 HOH A 92 592 136 HOH HOH . 
T 6 HOH A 93 593 188 HOH HOH . 
T 6 HOH A 94 594 109 HOH HOH . 
T 6 HOH A 95 595 191 HOH HOH . 
T 6 HOH A 96 596 11 HOH HOH . 
T 6 HOH A 97 597 189 HOH HOH . 
T 6 HOH A 98 598 42 HOH HOH . 
T 6 HOH A 99 599 45 HOH HOH . 
T 6 HOH A 100 600 154 HOH HOH . 
T 6 HOH A 101 601 138 HOH HOH . 
T 6 HOH A 102 602 205 HOH HOH . 
T 6 HOH A 103 603 127 HOH HOH . 
T 6 HOH A 104 604 207 HOH HOH . 
T 6 HOH A 105 605 155 HOH HOH . 
T 6 HOH A 106 606 157 HOH HOH . 
T 6 HOH A 107 607 137 HOH HOH . 
T 6 HOH A 108 608 190 HOH HOH . 
T 6 HOH A 109 609 185 HOH HOH . 
T 6 HOH A 110 610 186 HOH HOH . 
T 6 HOH A 111 611 195 HOH HOH . 
T 6 HOH A 112 612 55 HOH HOH . 
T 6 HOH A 113 613 223 HOH HOH . 
T 6 HOH A 114 614 108 HOH HOH . 
T 6 HOH A 115 615 202 HOH HOH . 
T 6 HOH A 116 616 201 HOH HOH . 
T 6 HOH A 117 617 225 HOH HOH . 
T 6 HOH A 118 618 69 HOH HOH . 
T 6 HOH A 119 619 224 HOH HOH . 
T 6 HOH A 120 620 65 HOH HOH . 
T 6 HOH A 121 621 37 HOH HOH . 
T 6 HOH A 122 622 197 HOH HOH . 
T 6 HOH A 123 623 156 HOH HOH . 
T 6 HOH A 124 624 194 HOH HOH . 
U 6 HOH B 1 501 41 HOH HOH . 
U 6 HOH B 2 502 181 HOH HOH . 
U 6 HOH B 3 503 112 HOH HOH . 
U 6 HOH B 4 504 174 HOH HOH . 
U 6 HOH B 5 505 163 HOH HOH . 
U 6 HOH B 6 506 63 HOH HOH . 
U 6 HOH B 7 507 198 HOH HOH . 
U 6 HOH B 8 508 175 HOH HOH . 
U 6 HOH B 9 509 46 HOH HOH . 
U 6 HOH B 10 510 104 HOH HOH . 
U 6 HOH B 11 511 33 HOH HOH . 
U 6 HOH B 12 512 10 HOH HOH . 
U 6 HOH B 13 513 131 HOH HOH . 
U 6 HOH B 14 514 200 HOH HOH . 
U 6 HOH B 15 515 113 HOH HOH . 
U 6 HOH B 16 516 142 HOH HOH . 
U 6 HOH B 17 517 16 HOH HOH . 
U 6 HOH B 18 518 86 HOH HOH . 
U 6 HOH B 19 519 164 HOH HOH . 
U 6 HOH B 20 520 31 HOH HOH . 
U 6 HOH B 21 521 96 HOH HOH . 
U 6 HOH B 22 522 39 HOH HOH . 
U 6 HOH B 23 523 99 HOH HOH . 
U 6 HOH B 24 524 30 HOH HOH . 
U 6 HOH B 25 525 6 HOH HOH . 
U 6 HOH B 26 526 26 HOH HOH . 
U 6 HOH B 27 527 132 HOH HOH . 
U 6 HOH B 28 528 3 HOH HOH . 
U 6 HOH B 29 529 27 HOH HOH . 
U 6 HOH B 30 530 217 HOH HOH . 
U 6 HOH B 31 531 21 HOH HOH . 
U 6 HOH B 32 532 70 HOH HOH . 
U 6 HOH B 33 533 130 HOH HOH . 
U 6 HOH B 34 534 123 HOH HOH . 
U 6 HOH B 35 535 145 HOH HOH . 
U 6 HOH B 36 536 8 HOH HOH . 
U 6 HOH B 37 537 129 HOH HOH . 
U 6 HOH B 38 538 178 HOH HOH . 
U 6 HOH B 39 539 182 HOH HOH . 
U 6 HOH B 40 540 101 HOH HOH . 
U 6 HOH B 41 541 94 HOH HOH . 
U 6 HOH B 42 542 20 HOH HOH . 
U 6 HOH B 43 543 24 HOH HOH . 
U 6 HOH B 44 544 49 HOH HOH . 
U 6 HOH B 45 545 133 HOH HOH . 
U 6 HOH B 46 546 57 HOH HOH . 
U 6 HOH B 47 547 121 HOH HOH . 
U 6 HOH B 48 548 88 HOH HOH . 
U 6 HOH B 49 549 116 HOH HOH . 
U 6 HOH B 50 550 48 HOH HOH . 
U 6 HOH B 51 551 75 HOH HOH . 
U 6 HOH B 52 552 166 HOH HOH . 
U 6 HOH B 53 553 36 HOH HOH . 
U 6 HOH B 54 554 216 HOH HOH . 
U 6 HOH B 55 555 25 HOH HOH . 
U 6 HOH B 56 556 210 HOH HOH . 
U 6 HOH B 57 557 58 HOH HOH . 
U 6 HOH B 58 558 53 HOH HOH . 
U 6 HOH B 59 559 159 HOH HOH . 
U 6 HOH B 60 560 172 HOH HOH . 
U 6 HOH B 61 561 74 HOH HOH . 
U 6 HOH B 62 562 100 HOH HOH . 
U 6 HOH B 63 563 169 HOH HOH . 
U 6 HOH B 64 564 97 HOH HOH . 
U 6 HOH B 65 565 211 HOH HOH . 
U 6 HOH B 66 566 85 HOH HOH . 
U 6 HOH B 67 567 18 HOH HOH . 
U 6 HOH B 68 568 122 HOH HOH . 
U 6 HOH B 69 569 173 HOH HOH . 
U 6 HOH B 70 570 102 HOH HOH . 
U 6 HOH B 71 571 78 HOH HOH . 
U 6 HOH B 72 572 162 HOH HOH . 
U 6 HOH B 73 573 92 HOH HOH . 
U 6 HOH B 74 574 152 HOH HOH . 
U 6 HOH B 75 575 79 HOH HOH . 
U 6 HOH B 76 576 161 HOH HOH . 
U 6 HOH B 77 577 168 HOH HOH . 
U 6 HOH B 78 578 221 HOH HOH . 
U 6 HOH B 79 579 227 HOH HOH . 
U 6 HOH B 80 580 91 HOH HOH . 
U 6 HOH B 81 581 124 HOH HOH . 
U 6 HOH B 82 582 76 HOH HOH . 
U 6 HOH B 83 583 43 HOH HOH . 
U 6 HOH B 84 584 212 HOH HOH . 
U 6 HOH B 85 585 73 HOH HOH . 
U 6 HOH B 86 586 180 HOH HOH . 
U 6 HOH B 87 587 118 HOH HOH . 
U 6 HOH B 88 588 196 HOH HOH . 
U 6 HOH B 89 589 106 HOH HOH . 
U 6 HOH B 90 590 203 HOH HOH . 
U 6 HOH B 91 591 228 HOH HOH . 
U 6 HOH B 92 592 160 HOH HOH . 
U 6 HOH B 93 593 170 HOH HOH . 
U 6 HOH B 94 594 222 HOH HOH . 
U 6 HOH B 95 595 193 HOH HOH . 
U 6 HOH B 96 596 103 HOH HOH . 
U 6 HOH B 97 597 215 HOH HOH . 
U 6 HOH B 98 598 95 HOH HOH . 
U 6 HOH B 99 599 105 HOH HOH . 
U 6 HOH B 100 600 179 HOH HOH . 
U 6 HOH B 101 601 218 HOH HOH . 
U 6 HOH B 102 602 128 HOH HOH . 
U 6 HOH B 103 603 98 HOH HOH . 
U 6 HOH B 104 604 214 HOH HOH . 
U 6 HOH B 105 605 229 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . Q 5 -19.497 72.05 -22.757 1 89.28 ? C1 MPD 407 B 1 
HETATM 2 C C2 MPD . . . Q 5 -19.49 70.551 -22.467 1 84.46 ? C2 MPD 407 B 1 
HETATM 3 O O2 MPD . . . Q 5 -18.916 70.248 -21.155 1 67.62 ? O2 MPD 407 B 1 
HETATM 4 C CM MPD . . . Q 5 -20.892 69.957 -22.575 1 89.36 ? CM MPD 407 B 1 
HETATM 5 C C3 MPD . . . Q 5 -18.552 69.911 -23.443 1 82.75 ? C3 MPD 407 B 1 
HETATM 6 C C4 MPD . . . Q 5 -19.077 69.753 -24.864 1 77.93 ? C4 MPD 407 B 1 
HETATM 7 O O4 MPD . . . Q 5 -20.001 70.676 -25.372 1 80.11 ? O4 MPD 407 B 1 
HETATM 8 C C5 MPD . . . Q 5 -17.876 69.827 -25.777 1 95.51 ? C5 MPD 407 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#