data_6S4E # _model_server_result.job_id 0YjWg5I-CCL12nYZfLadPA _model_server_result.datetime_utc '2024-11-06 22:44:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6S4E # _exptl.entry_id 6S4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.375 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S4E _cell.length_a 74.559 _cell.length_b 74.559 _cell.length_c 99.248 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_855 -x+3,-y,z -1 0 0 0 -1 0 0 0 1 223.677 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H19 N7 O7' _chem_comp.formula_weight 433.375 _chem_comp.id 9L9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2A C2 9L9 sing 1 n n N1 C2 9L9 doub 2 n n N1 C6 9L9 sing 3 n n C2 N3 9L9 sing 4 n n N3 C4 9L9 sing 5 n n C4 O4A 9L9 doub 6 n n C4 C5 9L9 sing 7 n n N5A C5 9L9 sing 8 n n N5A CAW 9L9 sing 9 n n C5 C6 9L9 doub 10 n n C6 N7 9L9 sing 11 n n O8A CAW 9L9 doub 12 n n N9 C1B 9L9 sing 13 n n N9 CAW 9L9 sing 14 n n C1B C2B 9L9 sing 15 n y C1B C6B 9L9 doub 16 n y C2B C3B 9L9 doub 17 n y C3B C4B 9L9 sing 18 n y C4B C5B 9L9 doub 19 n y C4B C7B 9L9 sing 20 n n C5B C6B 9L9 sing 21 n y C7B O7B 9L9 doub 22 n n C7B N 9L9 sing 23 n n N CA 9L9 sing 24 n n CB CG 9L9 sing 25 n n CB CA 9L9 sing 26 n n CG CD 9L9 sing 27 n n CD OE1 9L9 doub 28 n n CD OE2 9L9 sing 29 n n C O 9L9 sing 30 n n C OXT 9L9 doub 31 n n C CA 9L9 sing 32 n n N2A H2A1 9L9 sing 33 n n N2A H2A2 9L9 sing 34 n n N7 H71N 9L9 sing 35 n n N7 H72N 9L9 sing 36 n n N9 H9 9L9 sing 37 n n C2B H2B 9L9 sing 38 n n C6B H6B 9L9 sing 39 n n C3B H3B 9L9 sing 40 n n C5B H5B 9L9 sing 41 n n N H 9L9 sing 42 n n CA HA 9L9 sing 43 n n CB HB1C 9L9 sing 44 n n CB HB2C 9L9 sing 45 n n CG HG1C 9L9 sing 46 n n CG HG2C 9L9 sing 47 n n OE2 HE2 9L9 sing 48 n n O HB 9L9 sing 49 n n N5A H5A 9L9 sing 50 n n N3 HN3 9L9 sing 51 n n # _atom_sites.entry_id 6S4E _atom_sites.fract_transf_matrix[1][1] 0.013412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9L9 A 1 401 1 9L9 LIG . C 3 PO4 A 1 402 1 PO4 PO4 . D 3 PO4 A 1 403 2 PO4 PO4 . E 3 PO4 A 1 404 3 PO4 PO4 . F 3 PO4 A 1 405 4 PO4 PO4 . G 4 NAD A 1 406 1 NAD NAD . H 5 HOH A 1 501 8 HOH HOH . H 5 HOH A 2 502 63 HOH HOH . H 5 HOH A 3 503 88 HOH HOH . H 5 HOH A 4 504 42 HOH HOH . H 5 HOH A 5 505 140 HOH HOH . H 5 HOH A 6 506 77 HOH HOH . H 5 HOH A 7 507 27 HOH HOH . H 5 HOH A 8 508 55 HOH HOH . H 5 HOH A 9 509 13 HOH HOH . H 5 HOH A 10 510 38 HOH HOH . H 5 HOH A 11 511 44 HOH HOH . H 5 HOH A 12 512 154 HOH HOH . H 5 HOH A 13 513 67 HOH HOH . H 5 HOH A 14 514 143 HOH HOH . H 5 HOH A 15 515 43 HOH HOH . H 5 HOH A 16 516 41 HOH HOH . H 5 HOH A 17 517 48 HOH HOH . H 5 HOH A 18 518 26 HOH HOH . H 5 HOH A 19 519 153 HOH HOH . H 5 HOH A 20 520 40 HOH HOH . H 5 HOH A 21 521 21 HOH HOH . H 5 HOH A 22 522 15 HOH HOH . H 5 HOH A 23 523 16 HOH HOH . H 5 HOH A 24 524 35 HOH HOH . H 5 HOH A 25 525 47 HOH HOH . H 5 HOH A 26 526 3 HOH HOH . H 5 HOH A 27 527 69 HOH HOH . H 5 HOH A 28 528 81 HOH HOH . H 5 HOH A 29 529 61 HOH HOH . H 5 HOH A 30 530 2 HOH HOH . H 5 HOH A 31 531 7 HOH HOH . H 5 HOH A 32 532 23 HOH HOH . H 5 HOH A 33 533 28 HOH HOH . H 5 HOH A 34 534 90 HOH HOH . H 5 HOH A 35 535 70 HOH HOH . H 5 HOH A 36 536 53 HOH HOH . H 5 HOH A 37 537 76 HOH HOH . H 5 HOH A 38 538 11 HOH HOH . H 5 HOH A 39 539 64 HOH HOH . H 5 HOH A 40 540 17 HOH HOH . H 5 HOH A 41 541 25 HOH HOH . H 5 HOH A 42 542 39 HOH HOH . H 5 HOH A 43 543 12 HOH HOH . H 5 HOH A 44 544 93 HOH HOH . H 5 HOH A 45 545 92 HOH HOH . H 5 HOH A 46 546 158 HOH HOH . H 5 HOH A 47 547 9 HOH HOH . H 5 HOH A 48 548 59 HOH HOH . H 5 HOH A 49 549 24 HOH HOH . H 5 HOH A 50 550 10 HOH HOH . H 5 HOH A 51 551 66 HOH HOH . H 5 HOH A 52 552 4 HOH HOH . H 5 HOH A 53 553 105 HOH HOH . H 5 HOH A 54 554 52 HOH HOH . H 5 HOH A 55 555 65 HOH HOH . H 5 HOH A 56 556 19 HOH HOH . H 5 HOH A 57 557 82 HOH HOH . H 5 HOH A 58 558 126 HOH HOH . H 5 HOH A 59 559 62 HOH HOH . H 5 HOH A 60 560 33 HOH HOH . H 5 HOH A 61 561 152 HOH HOH . H 5 HOH A 62 562 117 HOH HOH . H 5 HOH A 63 563 22 HOH HOH . H 5 HOH A 64 564 20 HOH HOH . H 5 HOH A 65 565 83 HOH HOH . H 5 HOH A 66 566 68 HOH HOH . H 5 HOH A 67 567 49 HOH HOH . H 5 HOH A 68 568 139 HOH HOH . H 5 HOH A 69 569 78 HOH HOH . H 5 HOH A 70 570 14 HOH HOH . H 5 HOH A 71 571 133 HOH HOH . H 5 HOH A 72 572 34 HOH HOH . H 5 HOH A 73 573 151 HOH HOH . H 5 HOH A 74 574 86 HOH HOH . H 5 HOH A 75 575 89 HOH HOH . H 5 HOH A 76 576 57 HOH HOH . H 5 HOH A 77 577 84 HOH HOH . H 5 HOH A 78 578 54 HOH HOH . H 5 HOH A 79 579 37 HOH HOH . H 5 HOH A 80 580 137 HOH HOH . H 5 HOH A 81 581 50 HOH HOH . H 5 HOH A 82 582 29 HOH HOH . H 5 HOH A 83 583 132 HOH HOH . H 5 HOH A 84 584 6 HOH HOH . H 5 HOH A 85 585 18 HOH HOH . H 5 HOH A 86 586 145 HOH HOH . H 5 HOH A 87 587 134 HOH HOH . H 5 HOH A 88 588 157 HOH HOH . H 5 HOH A 89 589 31 HOH HOH . H 5 HOH A 90 590 99 HOH HOH . H 5 HOH A 91 591 156 HOH HOH . H 5 HOH A 92 592 159 HOH HOH . H 5 HOH A 93 593 122 HOH HOH . H 5 HOH A 94 594 144 HOH HOH . H 5 HOH A 95 595 136 HOH HOH . H 5 HOH A 96 596 100 HOH HOH . H 5 HOH A 97 597 101 HOH HOH . H 5 HOH A 98 598 147 HOH HOH . H 5 HOH A 99 599 155 HOH HOH . H 5 HOH A 100 600 121 HOH HOH . H 5 HOH A 101 601 56 HOH HOH . H 5 HOH A 102 602 113 HOH HOH . H 5 HOH A 103 603 103 HOH HOH . H 5 HOH A 104 604 146 HOH HOH . H 5 HOH A 105 605 87 HOH HOH . H 5 HOH A 106 606 30 HOH HOH . H 5 HOH A 107 607 74 HOH HOH . H 5 HOH A 108 608 32 HOH HOH . H 5 HOH A 109 609 46 HOH HOH . H 5 HOH A 110 610 115 HOH HOH . H 5 HOH A 111 611 72 HOH HOH . H 5 HOH A 112 612 94 HOH HOH . H 5 HOH A 113 613 123 HOH HOH . H 5 HOH A 114 614 149 HOH HOH . H 5 HOH A 115 615 116 HOH HOH . H 5 HOH A 116 616 130 HOH HOH . H 5 HOH A 117 617 112 HOH HOH . H 5 HOH A 118 618 108 HOH HOH . H 5 HOH A 119 619 150 HOH HOH . H 5 HOH A 120 620 58 HOH HOH . H 5 HOH A 121 621 80 HOH HOH . H 5 HOH A 122 622 114 HOH HOH . H 5 HOH A 123 623 91 HOH HOH . H 5 HOH A 124 624 60 HOH HOH . H 5 HOH A 125 625 110 HOH HOH . H 5 HOH A 126 626 131 HOH HOH . H 5 HOH A 127 627 111 HOH HOH . H 5 HOH A 128 628 124 HOH HOH . H 5 HOH A 129 629 45 HOH HOH . H 5 HOH A 130 630 142 HOH HOH . H 5 HOH A 131 631 138 HOH HOH . H 5 HOH A 132 632 102 HOH HOH . H 5 HOH A 133 633 120 HOH HOH . H 5 HOH A 134 634 107 HOH HOH . H 5 HOH A 135 635 75 HOH HOH . H 5 HOH A 136 636 85 HOH HOH . H 5 HOH A 137 637 95 HOH HOH . H 5 HOH A 138 638 148 HOH HOH . H 5 HOH A 139 639 106 HOH HOH . H 5 HOH A 140 640 125 HOH HOH . H 5 HOH A 141 641 109 HOH HOH . H 5 HOH A 142 642 104 HOH HOH . H 5 HOH A 143 643 73 HOH HOH . H 5 HOH A 144 644 79 HOH HOH . H 5 HOH A 145 645 118 HOH HOH . H 5 HOH A 146 646 119 HOH HOH . H 5 HOH A 147 647 51 HOH HOH . H 5 HOH A 148 648 135 HOH HOH . H 5 HOH A 149 649 36 HOH HOH . H 5 HOH A 150 650 141 HOH HOH . H 5 HOH A 151 651 71 HOH HOH . H 5 HOH A 152 652 128 HOH HOH . H 5 HOH A 153 653 127 HOH HOH . H 5 HOH A 154 654 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2A 9L9 . . . B 2 103.105 15.487 8.266 1 20.34 ? N2A 9L9 401 A 1 HETATM 2 N N1 9L9 . . . B 2 103.304 16.859 6.322 1 19.63 ? N1 9L9 401 A 1 HETATM 3 C C2 9L9 . . . B 2 102.765 15.79 6.975 1 18.74 ? C2 9L9 401 A 1 HETATM 4 N N3 9L9 . . . B 2 101.87 14.904 6.347 1 21.55 ? N3 9L9 401 A 1 HETATM 5 C C4 9L9 . . . B 2 101.533 15.148 5.004 1 21.26 ? C4 9L9 401 A 1 HETATM 6 O O4A 9L9 . . . B 2 100.697 14.292 4.556 1 23.77 ? O4A 9L9 401 A 1 HETATM 7 N N5A 9L9 . . . B 2 101.709 16.462 3.056 1 21.03 ? N5A 9L9 401 A 1 HETATM 8 C C5 9L9 . . . B 2 102.112 16.237 4.293 1 21.67 ? C5 9L9 401 A 1 HETATM 9 C C6 9L9 . . . B 2 102.995 17.1 4.981 1 19.18 ? C6 9L9 401 A 1 HETATM 10 N N7 9L9 . . . B 2 103.499 18.184 4.293 1 21.17 ? N7 9L9 401 A 1 HETATM 11 O O8A 9L9 . . . B 2 99.722 17.608 3.688 1 20.44 ? O8A 9L9 401 A 1 HETATM 12 N N9 9L9 . . . B 2 100.083 17.393 1.427 1 23.45 ? N9 9L9 401 A 1 HETATM 13 C C1B 9L9 . . . B 2 98.909 17.991 0.939 1 23.93 ? C1B 9L9 401 A 1 HETATM 14 C C2B 9L9 . . . B 2 98.912 18.565 -0.3 1 24.96 ? C2B 9L9 401 A 1 HETATM 15 C C3B 9L9 . . . B 2 97.742 19.168 -0.832 1 25.91 ? C3B 9L9 401 A 1 HETATM 16 C C4B 9L9 . . . B 2 96.522 19.169 -0.105 1 26.02 ? C4B 9L9 401 A 1 HETATM 17 C C5B 9L9 . . . B 2 96.509 18.539 1.131 1 24.91 ? C5B 9L9 401 A 1 HETATM 18 C C6B 9L9 . . . B 2 97.691 17.95 1.669 1 23.43 ? C6B 9L9 401 A 1 HETATM 19 C C7B 9L9 . . . B 2 95.196 19.757 -0.723 1 28.74 ? C7B 9L9 401 A 1 HETATM 20 O O7B 9L9 . . . B 2 94.239 19.867 0.078 1 29.77 ? O7B 9L9 401 A 1 HETATM 21 C CAW 9L9 . . . B 2 100.448 17.186 2.73 1 22.64 ? CAW 9L9 401 A 1 HETATM 22 N N 9L9 . . . B 2 95.102 19.985 -2.079 1 32.62 ? N 9L9 401 A 1 HETATM 23 C CA 9L9 . . . B 2 93.914 20.468 -2.844 1 36.68 ? CA 9L9 401 A 1 HETATM 24 C C 9L9 . . . B 2 94.051 19.895 -4.27 1 35.99 ? C 9L9 401 A 1 HETATM 25 O OXT 9L9 . . . B 2 93.023 19.788 -5.052 1 34.56 -1 OXT 9L9 401 A 1 HETATM 26 C CB 9L9 . . . B 2 93.894 22.014 -2.807 1 43.86 ? CB 9L9 401 A 1 HETATM 27 C CG 9L9 . . . B 2 95.164 22.703 -3.336 1 50.49 ? CG 9L9 401 A 1 HETATM 28 C CD 9L9 . . . B 2 95.506 24.048 -2.639 1 62.74 ? CD 9L9 401 A 1 HETATM 29 O OE1 9L9 . . . B 2 94.776 24.585 -1.687 1 65.92 -1 OE1 9L9 401 A 1 HETATM 30 O OE2 9L9 . . . B 2 96.583 24.696 -2.974 1 65.77 ? OE2 9L9 401 A 1 HETATM 31 O O 9L9 . . . B 2 95.184 19.501 -4.764 1 33.99 ? O 9L9 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #