data_6S4E # _model_server_result.job_id ewhq9WlvaWW8ZsgVQcKNsA _model_server_result.datetime_utc '2024-11-06 22:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 6S4E # _exptl.entry_id 6S4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S4E _cell.length_a 74.559 _cell.length_b 74.559 _cell.length_c 99.248 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_855 -x+3,-y,z -1 0 0 0 -1 0 0 0 1 223.677 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 288 n n PA O2A NAD sing 289 n n PA O5B NAD sing 290 n n PA O3 NAD sing 291 n n O2A HOA2 NAD sing 292 n n O5B C5B NAD sing 293 n n C5B C4B NAD sing 294 n n C5B H51A NAD sing 295 n n C5B H52A NAD sing 296 n n C4B O4B NAD sing 297 n n C4B C3B NAD sing 298 n n C4B H4B NAD sing 299 n n O4B C1B NAD sing 300 n n C3B O3B NAD sing 301 n n C3B C2B NAD sing 302 n n C3B H3B NAD sing 303 n n O3B HO3A NAD sing 304 n n C2B O2B NAD sing 305 n n C2B C1B NAD sing 306 n n C2B H2B NAD sing 307 n n O2B HO2A NAD sing 308 n n C1B N9A NAD sing 309 n n C1B H1B NAD sing 310 n n N9A C8A NAD sing 311 n y N9A C4A NAD sing 312 n y C8A N7A NAD doub 313 n y C8A H8A NAD sing 314 n n N7A C5A NAD sing 315 n y C5A C6A NAD sing 316 n y C5A C4A NAD doub 317 n y C6A N6A NAD sing 318 n n C6A N1A NAD doub 319 n y N6A H61A NAD sing 320 n n N6A H62A NAD sing 321 n n N1A C2A NAD sing 322 n y C2A N3A NAD doub 323 n y C2A H2A NAD sing 324 n n N3A C4A NAD sing 325 n y O3 PN NAD sing 326 n n PN O1N NAD doub 327 n n PN O2N NAD sing 328 n n PN O5D NAD sing 329 n n O5D C5D NAD sing 330 n n C5D C4D NAD sing 331 n n C5D H51N NAD sing 332 n n C5D H52N NAD sing 333 n n C4D O4D NAD sing 334 n n C4D C3D NAD sing 335 n n C4D H4D NAD sing 336 n n O4D C1D NAD sing 337 n n C3D O3D NAD sing 338 n n C3D C2D NAD sing 339 n n C3D H3D NAD sing 340 n n O3D HO3N NAD sing 341 n n C2D O2D NAD sing 342 n n C2D C1D NAD sing 343 n n C2D H2D NAD sing 344 n n O2D HO2N NAD sing 345 n n C1D N1N NAD sing 346 n n C1D H1D NAD sing 347 n n N1N C2N NAD sing 348 n y N1N C6N NAD doub 349 n y C2N C3N NAD doub 350 n y C2N H2N NAD sing 351 n n C3N C7N NAD sing 352 n n C3N C4N NAD sing 353 n y C7N O7N NAD doub 354 n n C7N N7N NAD sing 355 n n N7N H71N NAD sing 356 n n N7N H72N NAD sing 357 n n C4N C5N NAD doub 358 n y C4N H4N NAD sing 359 n n C5N C6N NAD sing 360 n y C5N H5N NAD sing 361 n n C6N H6N NAD sing 362 n n # _atom_sites.entry_id 6S4E _atom_sites.fract_transf_matrix[1][1] 0.013412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9L9 A 1 401 1 9L9 LIG . C 3 PO4 A 1 402 1 PO4 PO4 . D 3 PO4 A 1 403 2 PO4 PO4 . E 3 PO4 A 1 404 3 PO4 PO4 . F 3 PO4 A 1 405 4 PO4 PO4 . G 4 NAD A 1 406 1 NAD NAD . H 5 HOH A 1 501 8 HOH HOH . H 5 HOH A 2 502 63 HOH HOH . H 5 HOH A 3 503 88 HOH HOH . H 5 HOH A 4 504 42 HOH HOH . H 5 HOH A 5 505 140 HOH HOH . H 5 HOH A 6 506 77 HOH HOH . H 5 HOH A 7 507 27 HOH HOH . H 5 HOH A 8 508 55 HOH HOH . H 5 HOH A 9 509 13 HOH HOH . H 5 HOH A 10 510 38 HOH HOH . H 5 HOH A 11 511 44 HOH HOH . H 5 HOH A 12 512 154 HOH HOH . H 5 HOH A 13 513 67 HOH HOH . H 5 HOH A 14 514 143 HOH HOH . H 5 HOH A 15 515 43 HOH HOH . H 5 HOH A 16 516 41 HOH HOH . H 5 HOH A 17 517 48 HOH HOH . H 5 HOH A 18 518 26 HOH HOH . H 5 HOH A 19 519 153 HOH HOH . H 5 HOH A 20 520 40 HOH HOH . H 5 HOH A 21 521 21 HOH HOH . H 5 HOH A 22 522 15 HOH HOH . H 5 HOH A 23 523 16 HOH HOH . H 5 HOH A 24 524 35 HOH HOH . H 5 HOH A 25 525 47 HOH HOH . H 5 HOH A 26 526 3 HOH HOH . H 5 HOH A 27 527 69 HOH HOH . H 5 HOH A 28 528 81 HOH HOH . H 5 HOH A 29 529 61 HOH HOH . H 5 HOH A 30 530 2 HOH HOH . H 5 HOH A 31 531 7 HOH HOH . H 5 HOH A 32 532 23 HOH HOH . H 5 HOH A 33 533 28 HOH HOH . H 5 HOH A 34 534 90 HOH HOH . H 5 HOH A 35 535 70 HOH HOH . H 5 HOH A 36 536 53 HOH HOH . H 5 HOH A 37 537 76 HOH HOH . H 5 HOH A 38 538 11 HOH HOH . H 5 HOH A 39 539 64 HOH HOH . H 5 HOH A 40 540 17 HOH HOH . H 5 HOH A 41 541 25 HOH HOH . H 5 HOH A 42 542 39 HOH HOH . H 5 HOH A 43 543 12 HOH HOH . H 5 HOH A 44 544 93 HOH HOH . H 5 HOH A 45 545 92 HOH HOH . H 5 HOH A 46 546 158 HOH HOH . H 5 HOH A 47 547 9 HOH HOH . H 5 HOH A 48 548 59 HOH HOH . H 5 HOH A 49 549 24 HOH HOH . H 5 HOH A 50 550 10 HOH HOH . H 5 HOH A 51 551 66 HOH HOH . H 5 HOH A 52 552 4 HOH HOH . H 5 HOH A 53 553 105 HOH HOH . H 5 HOH A 54 554 52 HOH HOH . H 5 HOH A 55 555 65 HOH HOH . H 5 HOH A 56 556 19 HOH HOH . H 5 HOH A 57 557 82 HOH HOH . H 5 HOH A 58 558 126 HOH HOH . H 5 HOH A 59 559 62 HOH HOH . H 5 HOH A 60 560 33 HOH HOH . H 5 HOH A 61 561 152 HOH HOH . H 5 HOH A 62 562 117 HOH HOH . H 5 HOH A 63 563 22 HOH HOH . H 5 HOH A 64 564 20 HOH HOH . H 5 HOH A 65 565 83 HOH HOH . H 5 HOH A 66 566 68 HOH HOH . H 5 HOH A 67 567 49 HOH HOH . H 5 HOH A 68 568 139 HOH HOH . H 5 HOH A 69 569 78 HOH HOH . H 5 HOH A 70 570 14 HOH HOH . H 5 HOH A 71 571 133 HOH HOH . H 5 HOH A 72 572 34 HOH HOH . H 5 HOH A 73 573 151 HOH HOH . H 5 HOH A 74 574 86 HOH HOH . H 5 HOH A 75 575 89 HOH HOH . H 5 HOH A 76 576 57 HOH HOH . H 5 HOH A 77 577 84 HOH HOH . H 5 HOH A 78 578 54 HOH HOH . H 5 HOH A 79 579 37 HOH HOH . H 5 HOH A 80 580 137 HOH HOH . H 5 HOH A 81 581 50 HOH HOH . H 5 HOH A 82 582 29 HOH HOH . H 5 HOH A 83 583 132 HOH HOH . H 5 HOH A 84 584 6 HOH HOH . H 5 HOH A 85 585 18 HOH HOH . H 5 HOH A 86 586 145 HOH HOH . H 5 HOH A 87 587 134 HOH HOH . H 5 HOH A 88 588 157 HOH HOH . H 5 HOH A 89 589 31 HOH HOH . H 5 HOH A 90 590 99 HOH HOH . H 5 HOH A 91 591 156 HOH HOH . H 5 HOH A 92 592 159 HOH HOH . H 5 HOH A 93 593 122 HOH HOH . H 5 HOH A 94 594 144 HOH HOH . H 5 HOH A 95 595 136 HOH HOH . H 5 HOH A 96 596 100 HOH HOH . H 5 HOH A 97 597 101 HOH HOH . H 5 HOH A 98 598 147 HOH HOH . H 5 HOH A 99 599 155 HOH HOH . H 5 HOH A 100 600 121 HOH HOH . H 5 HOH A 101 601 56 HOH HOH . H 5 HOH A 102 602 113 HOH HOH . H 5 HOH A 103 603 103 HOH HOH . H 5 HOH A 104 604 146 HOH HOH . H 5 HOH A 105 605 87 HOH HOH . H 5 HOH A 106 606 30 HOH HOH . H 5 HOH A 107 607 74 HOH HOH . H 5 HOH A 108 608 32 HOH HOH . H 5 HOH A 109 609 46 HOH HOH . H 5 HOH A 110 610 115 HOH HOH . H 5 HOH A 111 611 72 HOH HOH . H 5 HOH A 112 612 94 HOH HOH . H 5 HOH A 113 613 123 HOH HOH . H 5 HOH A 114 614 149 HOH HOH . H 5 HOH A 115 615 116 HOH HOH . H 5 HOH A 116 616 130 HOH HOH . H 5 HOH A 117 617 112 HOH HOH . H 5 HOH A 118 618 108 HOH HOH . H 5 HOH A 119 619 150 HOH HOH . H 5 HOH A 120 620 58 HOH HOH . H 5 HOH A 121 621 80 HOH HOH . H 5 HOH A 122 622 114 HOH HOH . H 5 HOH A 123 623 91 HOH HOH . H 5 HOH A 124 624 60 HOH HOH . H 5 HOH A 125 625 110 HOH HOH . H 5 HOH A 126 626 131 HOH HOH . H 5 HOH A 127 627 111 HOH HOH . H 5 HOH A 128 628 124 HOH HOH . H 5 HOH A 129 629 45 HOH HOH . H 5 HOH A 130 630 142 HOH HOH . H 5 HOH A 131 631 138 HOH HOH . H 5 HOH A 132 632 102 HOH HOH . H 5 HOH A 133 633 120 HOH HOH . H 5 HOH A 134 634 107 HOH HOH . H 5 HOH A 135 635 75 HOH HOH . H 5 HOH A 136 636 85 HOH HOH . H 5 HOH A 137 637 95 HOH HOH . H 5 HOH A 138 638 148 HOH HOH . H 5 HOH A 139 639 106 HOH HOH . H 5 HOH A 140 640 125 HOH HOH . H 5 HOH A 141 641 109 HOH HOH . H 5 HOH A 142 642 104 HOH HOH . H 5 HOH A 143 643 73 HOH HOH . H 5 HOH A 144 644 79 HOH HOH . H 5 HOH A 145 645 118 HOH HOH . H 5 HOH A 146 646 119 HOH HOH . H 5 HOH A 147 647 51 HOH HOH . H 5 HOH A 148 648 135 HOH HOH . H 5 HOH A 149 649 36 HOH HOH . H 5 HOH A 150 650 141 HOH HOH . H 5 HOH A 151 651 71 HOH HOH . H 5 HOH A 152 652 128 HOH HOH . H 5 HOH A 153 653 127 HOH HOH . H 5 HOH A 154 654 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 4 110.551 16.419 -3.166 1 71.61 ? PA NAD 406 A 1 HETATM 2 O O1A NAD . . . G 4 110.846 17.785 -3.781 1 70.62 ? O1A NAD 406 A 1 HETATM 3 O O2A NAD . . . G 4 111.467 15.811 -2.116 1 65.84 ? O2A NAD 406 A 1 HETATM 4 O O5B NAD . . . G 4 110.484 15.393 -4.406 1 56.37 ? O5B NAD 406 A 1 HETATM 5 C C5B NAD . . . G 4 111.372 15.575 -5.479 1 45.33 ? C5B NAD 406 A 1 HETATM 6 C C4B NAD . . . G 4 111.641 14.183 -5.977 1 38.87 ? C4B NAD 406 A 1 HETATM 7 O O4B NAD . . . G 4 111.529 14.239 -7.4 1 40.87 ? O4B NAD 406 A 1 HETATM 8 C C3B NAD . . . G 4 113.04 13.712 -5.64 1 33.79 ? C3B NAD 406 A 1 HETATM 9 O O3B NAD . . . G 4 112.952 12.359 -5.305 1 29.27 ? O3B NAD 406 A 1 HETATM 10 C C2B NAD . . . G 4 113.861 13.954 -6.914 1 34.56 ? C2B NAD 406 A 1 HETATM 11 O O2B NAD . . . G 4 115.082 13.149 -7.137 1 24.19 ? O2B NAD 406 A 1 HETATM 12 C C1B NAD . . . G 4 112.774 13.823 -7.994 1 37.95 ? C1B NAD 406 A 1 HETATM 13 N N9A NAD . . . G 4 113.105 14.549 -9.251 1 36.82 ? N9A NAD 406 A 1 HETATM 14 C C8A NAD . . . G 4 113.584 15.803 -9.348 1 41.64 ? C8A NAD 406 A 1 HETATM 15 N N7A NAD . . . G 4 113.794 16.113 -10.669 1 44.07 ? N7A NAD 406 A 1 HETATM 16 C C5A NAD . . . G 4 113.424 15.062 -11.428 1 41.47 ? C5A NAD 406 A 1 HETATM 17 C C6A NAD . . . G 4 113.392 14.738 -12.879 1 42.74 ? C6A NAD 406 A 1 HETATM 18 N N6A NAD . . . G 4 113.808 15.674 -13.76 1 43.67 ? N6A NAD 406 A 1 HETATM 19 N N1A NAD . . . G 4 112.94 13.52 -13.287 1 42.34 ? N1A NAD 406 A 1 HETATM 20 C C2A NAD . . . G 4 112.528 12.619 -12.377 1 40.34 ? C2A NAD 406 A 1 HETATM 21 N N3A NAD . . . G 4 112.538 12.877 -11.042 1 39.48 ? N3A NAD 406 A 1 HETATM 22 C C4A NAD . . . G 4 112.984 14.03 -10.493 1 38.69 ? C4A NAD 406 A 1 HETATM 23 O O3 NAD . . . G 4 109.014 16.455 -2.611 1 79.61 ? O3 NAD 406 A 1 HETATM 24 P PN NAD . . . G 4 107.873 15.28 -2.577 1 84.47 ? PN NAD 406 A 1 HETATM 25 O O1N NAD . . . G 4 107.352 15.261 -1.151 1 83.93 ? O1N NAD 406 A 1 HETATM 26 O O2N NAD . . . G 4 108.347 13.985 -3.205 1 79.05 ? O2N NAD 406 A 1 HETATM 27 O O5D NAD . . . G 4 106.73 15.847 -3.565 1 75.56 ? O5D NAD 406 A 1 HETATM 28 C C5D NAD . . . G 4 107.073 16.142 -4.923 1 75.2 ? C5D NAD 406 A 1 HETATM 29 C C4D NAD . . . G 4 105.852 16.731 -5.599 1 72.98 ? C4D NAD 406 A 1 HETATM 30 O O4D NAD . . . G 4 104.741 16.098 -4.964 1 72.78 ? O4D NAD 406 A 1 HETATM 31 C C3D NAD . . . G 4 105.718 18.241 -5.364 1 73.23 ? C3D NAD 406 A 1 HETATM 32 O O3D NAD . . . G 4 105.174 18.947 -6.483 1 64.93 ? O3D NAD 406 A 1 HETATM 33 C C2D NAD . . . G 4 104.745 18.36 -4.208 1 73.34 ? C2D NAD 406 A 1 HETATM 34 O O2D NAD . . . G 4 104.031 19.609 -4.25 1 70.5 ? O2D NAD 406 A 1 HETATM 35 C C1D NAD . . . G 4 103.867 17.125 -4.451 1 73.84 ? C1D NAD 406 A 1 HETATM 36 N N1N NAD . . . G 4 103.052 16.669 -3.297 1 72.21 ? N1N NAD 406 A 1 HETATM 37 C C2N NAD . . . G 4 101.748 16.459 -3.532 1 68.49 ? C2N NAD 406 A 1 HETATM 38 C C3N NAD . . . G 4 100.875 16.038 -2.545 1 61.9 ? C3N NAD 406 A 1 HETATM 39 C C7N NAD . . . G 4 99.422 15.829 -2.924 1 54.55 ? C7N NAD 406 A 1 HETATM 40 O O7N NAD . . . G 4 99.071 15.99 -4.087 1 50.42 ? O7N NAD 406 A 1 HETATM 41 N N7N NAD . . . G 4 98.519 15.488 -2.009 1 49.25 ? N7N NAD 406 A 1 HETATM 42 C C4N NAD . . . G 4 101.388 15.844 -1.266 1 63.17 ? C4N NAD 406 A 1 HETATM 43 C C5N NAD . . . G 4 102.739 16.072 -1.026 1 65.61 ? C5N NAD 406 A 1 HETATM 44 C C6N NAD . . . G 4 103.562 16.48 -2.066 1 69.9 ? C6N NAD 406 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #