data_6S4F # _model_server_result.job_id RJ7YqF5-Tt1SW5I2KKXR0A _model_server_result.datetime_utc '2024-11-06 22:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6S4F # _exptl.entry_id 6S4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(E,4S)-4-[[5-[2-[2,6-bis(azanyl)-4-oxidanylidene-1H-pyrimidin-5-yl]ethanoylamino]-3-fluoranyl-pyridin-2-yl]carbonylamino]pent-2-enedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6S4F _cell.length_a 116.895 _cell.length_b 116.895 _cell.length_c 112.965 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # _chem_comp.formula 'C17 H18 F N7 O7' _chem_comp.formula_weight 451.366 _chem_comp.id KUN _chem_comp.mon_nstd_flag . _chem_comp.name '(E,4S)-4-[[5-[2-[2,6-bis(azanyl)-4-oxidanylidene-1H-pyrimidin-5-yl]ethanoylamino]-3-fluoranyl-pyridin-2-yl]carbonylamino]pent-2-enedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TH9619 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 KUN doub 230 n n O19 C18 KUN doub 231 n n C27 C21 KUN sing 232 n n C27 O29 KUN sing 233 n n C21 C22 KUN sing 234 n n C21 N20 KUN sing 235 n n C23 C22 KUN sing 236 n n C23 C24 KUN sing 237 n n C18 N20 KUN sing 238 n n C18 C15 KUN sing 239 n n F14 C13 KUN sing 240 n n O26 C24 KUN doub 241 n n C24 O25 KUN sing 242 n n C15 C13 KUN doub 243 n y C15 N16 KUN sing 244 n y C13 C12 KUN sing 245 n y N16 C17 KUN doub 246 n y C12 C11 KUN doub 247 n y C17 C11 KUN sing 248 n y C11 N10 KUN sing 249 n n N10 C08 KUN sing 250 n n O09 C08 KUN doub 251 n n O31 C30 KUN doub 252 n n C08 C07 KUN sing 253 n n C30 N32 KUN sing 254 n n C30 C06 KUN sing 255 n n C07 C06 KUN sing 256 n n N32 C02 KUN doub 257 n n C06 C04 KUN doub 258 n n C02 N01 KUN sing 259 n n C02 N03 KUN sing 260 n n C04 N03 KUN sing 261 n n C04 N05 KUN sing 262 n n C17 H1 KUN sing 263 n n C21 H2 KUN sing 264 n n C22 H3 KUN sing 265 n n N01 H4 KUN sing 266 n n N01 H5 KUN sing 267 n n N05 H6 KUN sing 268 n n N05 H7 KUN sing 269 n n C07 H9 KUN sing 270 n n C07 H10 KUN sing 271 n n N10 H11 KUN sing 272 n n C12 H12 KUN sing 273 n n N20 H13 KUN sing 274 n n C23 H14 KUN sing 275 n n O25 H15 KUN sing 276 n n O29 H16 KUN sing 277 n n N03 H17 KUN sing 278 n n C22 H8 KUN sing 279 n n C23 H18 KUN sing 280 n n # _atom_sites.entry_id 6S4F _atom_sites.fract_transf_matrix[1][1] 0.008555 _atom_sites.fract_transf_matrix[1][2] 0.004939 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KUN A 1 401 2 KUN LIG . D 3 PO4 A 1 402 2 PO4 PO4 . E 3 PO4 A 1 403 3 PO4 PO4 . F 3 PO4 A 1 404 4 PO4 PO4 . G 3 PO4 A 1 405 7 PO4 PO4 . H 3 PO4 A 1 406 9 PO4 PO4 . I 4 ADP A 1 407 1 ADP ADP . J 5 GOL A 1 408 1 GOL GOL . K 2 KUN B 1 401 1 KUN LIG . L 3 PO4 B 1 402 5 PO4 PO4 . M 3 PO4 B 1 403 6 PO4 PO4 . N 3 PO4 B 1 404 8 PO4 PO4 . O 5 GOL B 1 405 2 GOL GOL . P 6 HOH A 1 501 6 HOH HOH . P 6 HOH A 2 502 38 HOH HOH . P 6 HOH A 3 503 79 HOH HOH . P 6 HOH A 4 504 77 HOH HOH . P 6 HOH A 5 505 58 HOH HOH . P 6 HOH A 6 506 34 HOH HOH . P 6 HOH A 7 507 24 HOH HOH . P 6 HOH A 8 508 69 HOH HOH . P 6 HOH A 9 509 10 HOH HOH . P 6 HOH A 10 510 28 HOH HOH . P 6 HOH A 11 511 20 HOH HOH . P 6 HOH A 12 512 129 HOH HOH . P 6 HOH A 13 513 19 HOH HOH . P 6 HOH A 14 514 124 HOH HOH . P 6 HOH A 15 515 122 HOH HOH . P 6 HOH A 16 516 135 HOH HOH . P 6 HOH A 17 517 162 HOH HOH . P 6 HOH A 18 518 133 HOH HOH . P 6 HOH A 19 519 53 HOH HOH . P 6 HOH A 20 520 130 HOH HOH . P 6 HOH A 21 521 18 HOH HOH . P 6 HOH A 22 522 22 HOH HOH . P 6 HOH A 23 523 107 HOH HOH . P 6 HOH A 24 524 16 HOH HOH . P 6 HOH A 25 525 42 HOH HOH . P 6 HOH A 26 526 105 HOH HOH . P 6 HOH A 27 527 131 HOH HOH . P 6 HOH A 28 528 123 HOH HOH . P 6 HOH A 29 529 27 HOH HOH . P 6 HOH A 30 530 7 HOH HOH . P 6 HOH A 31 531 17 HOH HOH . P 6 HOH A 32 532 47 HOH HOH . P 6 HOH A 33 533 5 HOH HOH . P 6 HOH A 34 534 102 HOH HOH . P 6 HOH A 35 535 147 HOH HOH . P 6 HOH A 36 536 45 HOH HOH . P 6 HOH A 37 537 91 HOH HOH . P 6 HOH A 38 538 13 HOH HOH . P 6 HOH A 39 539 90 HOH HOH . P 6 HOH A 40 540 8 HOH HOH . P 6 HOH A 41 541 80 HOH HOH . P 6 HOH A 42 542 60 HOH HOH . P 6 HOH A 43 543 43 HOH HOH . P 6 HOH A 44 544 125 HOH HOH . P 6 HOH A 45 545 108 HOH HOH . P 6 HOH A 46 546 142 HOH HOH . P 6 HOH A 47 547 96 HOH HOH . P 6 HOH A 48 548 136 HOH HOH . P 6 HOH A 49 549 71 HOH HOH . P 6 HOH A 50 550 85 HOH HOH . P 6 HOH A 51 551 138 HOH HOH . P 6 HOH A 52 552 82 HOH HOH . P 6 HOH A 53 553 132 HOH HOH . P 6 HOH A 54 554 145 HOH HOH . P 6 HOH A 55 555 83 HOH HOH . P 6 HOH A 56 556 35 HOH HOH . P 6 HOH A 57 557 59 HOH HOH . P 6 HOH A 58 558 140 HOH HOH . P 6 HOH A 59 559 106 HOH HOH . P 6 HOH A 60 560 139 HOH HOH . P 6 HOH A 61 561 87 HOH HOH . P 6 HOH A 62 562 50 HOH HOH . P 6 HOH A 63 563 21 HOH HOH . P 6 HOH A 64 564 81 HOH HOH . P 6 HOH A 65 565 36 HOH HOH . P 6 HOH A 66 566 93 HOH HOH . P 6 HOH A 67 567 23 HOH HOH . P 6 HOH A 68 568 103 HOH HOH . P 6 HOH A 69 569 52 HOH HOH . P 6 HOH A 70 570 134 HOH HOH . P 6 HOH A 71 571 48 HOH HOH . P 6 HOH A 72 572 149 HOH HOH . P 6 HOH A 73 573 141 HOH HOH . P 6 HOH A 74 574 86 HOH HOH . P 6 HOH A 75 575 150 HOH HOH . P 6 HOH A 76 576 39 HOH HOH . P 6 HOH A 77 577 37 HOH HOH . P 6 HOH A 78 578 114 HOH HOH . P 6 HOH A 79 579 143 HOH HOH . P 6 HOH A 80 580 46 HOH HOH . P 6 HOH A 81 581 92 HOH HOH . P 6 HOH A 82 582 137 HOH HOH . P 6 HOH A 83 583 84 HOH HOH . Q 6 HOH B 1 501 127 HOH HOH . Q 6 HOH B 2 502 119 HOH HOH . Q 6 HOH B 3 503 56 HOH HOH . Q 6 HOH B 4 504 65 HOH HOH . Q 6 HOH B 5 505 9 HOH HOH . Q 6 HOH B 6 506 75 HOH HOH . Q 6 HOH B 7 507 26 HOH HOH . Q 6 HOH B 8 508 70 HOH HOH . Q 6 HOH B 9 509 109 HOH HOH . Q 6 HOH B 10 510 76 HOH HOH . Q 6 HOH B 11 511 67 HOH HOH . Q 6 HOH B 12 512 51 HOH HOH . Q 6 HOH B 13 513 3 HOH HOH . Q 6 HOH B 14 514 11 HOH HOH . Q 6 HOH B 15 515 12 HOH HOH . Q 6 HOH B 16 516 66 HOH HOH . Q 6 HOH B 17 517 1 HOH HOH . Q 6 HOH B 18 518 73 HOH HOH . Q 6 HOH B 19 519 41 HOH HOH . Q 6 HOH B 20 520 155 HOH HOH . Q 6 HOH B 21 521 126 HOH HOH . Q 6 HOH B 22 522 57 HOH HOH . Q 6 HOH B 23 523 113 HOH HOH . Q 6 HOH B 24 524 89 HOH HOH . Q 6 HOH B 25 525 153 HOH HOH . Q 6 HOH B 26 526 55 HOH HOH . Q 6 HOH B 27 527 121 HOH HOH . Q 6 HOH B 28 528 148 HOH HOH . Q 6 HOH B 29 529 68 HOH HOH . Q 6 HOH B 30 530 2 HOH HOH . Q 6 HOH B 31 531 4 HOH HOH . Q 6 HOH B 32 532 25 HOH HOH . Q 6 HOH B 33 533 40 HOH HOH . Q 6 HOH B 34 534 44 HOH HOH . Q 6 HOH B 35 535 62 HOH HOH . Q 6 HOH B 36 536 29 HOH HOH . Q 6 HOH B 37 537 152 HOH HOH . Q 6 HOH B 38 538 63 HOH HOH . Q 6 HOH B 39 539 128 HOH HOH . Q 6 HOH B 40 540 104 HOH HOH . Q 6 HOH B 41 541 156 HOH HOH . Q 6 HOH B 42 542 159 HOH HOH . Q 6 HOH B 43 543 120 HOH HOH . Q 6 HOH B 44 544 158 HOH HOH . Q 6 HOH B 45 545 101 HOH HOH . Q 6 HOH B 46 546 30 HOH HOH . Q 6 HOH B 47 547 33 HOH HOH . Q 6 HOH B 48 548 72 HOH HOH . Q 6 HOH B 49 549 98 HOH HOH . Q 6 HOH B 50 550 151 HOH HOH . Q 6 HOH B 51 551 15 HOH HOH . Q 6 HOH B 52 552 100 HOH HOH . Q 6 HOH B 53 553 117 HOH HOH . Q 6 HOH B 54 554 144 HOH HOH . Q 6 HOH B 55 555 61 HOH HOH . Q 6 HOH B 56 556 146 HOH HOH . Q 6 HOH B 57 557 64 HOH HOH . Q 6 HOH B 58 558 111 HOH HOH . Q 6 HOH B 59 559 49 HOH HOH . Q 6 HOH B 60 560 161 HOH HOH . Q 6 HOH B 61 561 160 HOH HOH . Q 6 HOH B 62 562 32 HOH HOH . Q 6 HOH B 63 563 115 HOH HOH . Q 6 HOH B 64 564 110 HOH HOH . Q 6 HOH B 65 565 99 HOH HOH . Q 6 HOH B 66 566 88 HOH HOH . Q 6 HOH B 67 567 157 HOH HOH . Q 6 HOH B 68 568 74 HOH HOH . Q 6 HOH B 69 569 118 HOH HOH . Q 6 HOH B 70 570 154 HOH HOH . Q 6 HOH B 71 571 78 HOH HOH . Q 6 HOH B 72 572 116 HOH HOH . Q 6 HOH B 73 573 31 HOH HOH . Q 6 HOH B 74 574 95 HOH HOH . Q 6 HOH B 75 575 97 HOH HOH . Q 6 HOH B 76 576 54 HOH HOH . Q 6 HOH B 77 577 94 HOH HOH . Q 6 HOH B 78 578 112 HOH HOH . Q 6 HOH B 79 579 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 KUN . . . C 2 49.96 -12.714 2.862 1 65.73 ? C13 KUN 401 A 1 HETATM 2 C C15 KUN . . . C 2 48.494 -12.721 2.793 1 69.43 ? C15 KUN 401 A 1 HETATM 3 C C17 KUN . . . C 2 48.32 -11.227 4.579 1 61.17 ? C17 KUN 401 A 1 HETATM 4 C C21 KUN . . . C 2 45.357 -14.315 1.166 1 72.36 ? C21 KUN 401 A 1 HETATM 5 C C22 KUN . . . C 2 44.939 -15.677 1.888 1 78.51 ? C22 KUN 401 A 1 HETATM 6 C C24 KUN . . . C 2 45.697 -18.217 2.605 1 111.57 ? C24 KUN 401 A 1 HETATM 7 N N01 KUN . . . C 2 57.091 -9.029 9.197 1 55.76 ? N01 KUN 401 A 1 HETATM 8 C C02 KUN . . . C 2 55.726 -9.143 8.779 1 52.53 ? C02 KUN 401 A 1 HETATM 9 N N03 KUN . . . C 2 54.883 -10.019 9.416 1 50.4 ? N03 KUN 401 A 1 HETATM 10 C C04 KUN . . . C 2 53.547 -10.109 9.044 1 48.09 ? C04 KUN 401 A 1 HETATM 11 N N05 KUN . . . C 2 52.822 -10.944 9.732 1 55.41 ? N05 KUN 401 A 1 HETATM 12 C C06 KUN . . . C 2 53.014 -9.366 8.037 1 48.6 ? C06 KUN 401 A 1 HETATM 13 C C07 KUN . . . C 2 51.612 -9.445 7.569 1 49.67 ? C07 KUN 401 A 1 HETATM 14 C C08 KUN . . . C 2 51.315 -10.376 6.446 1 54.94 ? C08 KUN 401 A 1 HETATM 15 O O09 KUN . . . C 2 52.18 -11.182 6.139 1 54.73 ? O09 KUN 401 A 1 HETATM 16 N N10 KUN . . . C 2 50.141 -10.299 5.776 1 61.04 ? N10 KUN 401 A 1 HETATM 17 C C11 KUN . . . C 2 49.699 -11.111 4.761 1 60.16 ? C11 KUN 401 A 1 HETATM 18 C C12 KUN . . . C 2 50.508 -11.892 3.899 1 58.63 ? C12 KUN 401 A 1 HETATM 19 F F14 KUN . . . C 2 50.724 -13.4 2.053 1 67.66 ? F14 KUN 401 A 1 HETATM 20 N N16 KUN . . . C 2 47.759 -11.975 3.649 1 69.18 ? N16 KUN 401 A 1 HETATM 21 C C18 KUN . . . C 2 47.712 -13.542 1.813 1 71.44 ? C18 KUN 401 A 1 HETATM 22 O O19 KUN . . . C 2 48.383 -14.137 0.98 1 75.56 ? O19 KUN 401 A 1 HETATM 23 N N20 KUN . . . C 2 46.332 -13.608 1.955 1 73.83 ? N20 KUN 401 A 1 HETATM 24 C C23 KUN . . . C 2 45.865 -16.931 1.588 1 93.52 ? C23 KUN 401 A 1 HETATM 25 O O25 KUN . . . C 2 46.301 -18.197 3.715 1 113.79 ? O25 KUN 401 A 1 HETATM 26 O O26 KUN . . . C 2 44.968 -19.2 2.241 1 105.2 ? O26 KUN 401 A 1 HETATM 27 C C27 KUN . . . C 2 44.174 -13.221 1 1 75.42 ? C27 KUN 401 A 1 HETATM 28 O O28 KUN . . . C 2 43.569 -13.148 -0.086 1 79.11 ? O28 KUN 401 A 1 HETATM 29 O O29 KUN . . . C 2 43.925 -12.456 1.959 1 78.42 ? O29 KUN 401 A 1 HETATM 30 C C30 KUN . . . C 2 53.897 -8.452 7.349 1 48.16 ? C30 KUN 401 A 1 HETATM 31 O O31 KUN . . . C 2 53.572 -7.737 6.383 1 55.33 ? O31 KUN 401 A 1 HETATM 32 N N32 KUN . . . C 2 55.246 -8.355 7.745 1 47.69 ? N32 KUN 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #