data_6S4H # _model_server_result.job_id ouUF8lqkb4jcbtV3muoeZg _model_server_result.datetime_utc '2024-11-26 21:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 6S4H # _exptl.entry_id 6S4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S4H _cell.length_a 128.178 _cell.length_b 128.178 _cell.length_c 115.858 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 115.858 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 903 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.284 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6S4H _atom_sites.fract_transf_matrix[1][1] 0.007802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KUQ A 1 901 1 KUQ 248 . C 3 DMS A 1 902 2 DMS DMS . D 4 PLP A 1 903 920 PLP PLP . E 5 HOH A 1 1001 335 HOH HOH . E 5 HOH A 2 1002 46 HOH HOH . E 5 HOH A 3 1003 19 HOH HOH . E 5 HOH A 4 1004 355 HOH HOH . E 5 HOH A 5 1005 53 HOH HOH . E 5 HOH A 6 1006 137 HOH HOH . E 5 HOH A 7 1007 80 HOH HOH . E 5 HOH A 8 1008 209 HOH HOH . E 5 HOH A 9 1009 301 HOH HOH . E 5 HOH A 10 1010 235 HOH HOH . E 5 HOH A 11 1011 136 HOH HOH . E 5 HOH A 12 1012 17 HOH HOH . E 5 HOH A 13 1013 87 HOH HOH . E 5 HOH A 14 1014 153 HOH HOH . E 5 HOH A 15 1015 125 HOH HOH . E 5 HOH A 16 1016 158 HOH HOH . E 5 HOH A 17 1017 59 HOH HOH . E 5 HOH A 18 1018 132 HOH HOH . E 5 HOH A 19 1019 94 HOH HOH . E 5 HOH A 20 1020 16 HOH HOH . E 5 HOH A 21 1021 50 HOH HOH . E 5 HOH A 22 1022 168 HOH HOH . E 5 HOH A 23 1023 208 HOH HOH . E 5 HOH A 24 1024 161 HOH HOH . E 5 HOH A 25 1025 85 HOH HOH . E 5 HOH A 26 1026 119 HOH HOH . E 5 HOH A 27 1027 75 HOH HOH . E 5 HOH A 28 1028 45 HOH HOH . E 5 HOH A 29 1029 346 HOH HOH . E 5 HOH A 30 1030 82 HOH HOH . E 5 HOH A 31 1031 76 HOH HOH . E 5 HOH A 32 1032 155 HOH HOH . E 5 HOH A 33 1033 67 HOH HOH . E 5 HOH A 34 1034 92 HOH HOH . E 5 HOH A 35 1035 37 HOH HOH . E 5 HOH A 36 1036 216 HOH HOH . E 5 HOH A 37 1037 145 HOH HOH . E 5 HOH A 38 1038 140 HOH HOH . E 5 HOH A 39 1039 333 HOH HOH . E 5 HOH A 40 1040 22 HOH HOH . E 5 HOH A 41 1041 164 HOH HOH . E 5 HOH A 42 1042 107 HOH HOH . E 5 HOH A 43 1043 98 HOH HOH . E 5 HOH A 44 1044 148 HOH HOH . E 5 HOH A 45 1045 143 HOH HOH . E 5 HOH A 46 1046 344 HOH HOH . E 5 HOH A 47 1047 7 HOH HOH . E 5 HOH A 48 1048 122 HOH HOH . E 5 HOH A 49 1049 159 HOH HOH . E 5 HOH A 50 1050 65 HOH HOH . E 5 HOH A 51 1051 311 HOH HOH . E 5 HOH A 52 1052 160 HOH HOH . E 5 HOH A 53 1053 48 HOH HOH . E 5 HOH A 54 1054 130 HOH HOH . E 5 HOH A 55 1055 229 HOH HOH . E 5 HOH A 56 1056 361 HOH HOH . E 5 HOH A 57 1057 79 HOH HOH . E 5 HOH A 58 1058 5 HOH HOH . E 5 HOH A 59 1059 129 HOH HOH . E 5 HOH A 60 1060 283 HOH HOH . E 5 HOH A 61 1061 255 HOH HOH . E 5 HOH A 62 1062 38 HOH HOH . E 5 HOH A 63 1063 188 HOH HOH . E 5 HOH A 64 1064 134 HOH HOH . E 5 HOH A 65 1065 342 HOH HOH . E 5 HOH A 66 1066 226 HOH HOH . E 5 HOH A 67 1067 214 HOH HOH . E 5 HOH A 68 1068 248 HOH HOH . E 5 HOH A 69 1069 338 HOH HOH . E 5 HOH A 70 1070 118 HOH HOH . E 5 HOH A 71 1071 135 HOH HOH . E 5 HOH A 72 1072 212 HOH HOH . E 5 HOH A 73 1073 90 HOH HOH . E 5 HOH A 74 1074 120 HOH HOH . E 5 HOH A 75 1075 206 HOH HOH . E 5 HOH A 76 1076 10 HOH HOH . E 5 HOH A 77 1077 359 HOH HOH . E 5 HOH A 78 1078 84 HOH HOH . E 5 HOH A 79 1079 133 HOH HOH . E 5 HOH A 80 1080 31 HOH HOH . E 5 HOH A 81 1081 343 HOH HOH . E 5 HOH A 82 1082 95 HOH HOH . E 5 HOH A 83 1083 350 HOH HOH . E 5 HOH A 84 1084 114 HOH HOH . E 5 HOH A 85 1085 30 HOH HOH . E 5 HOH A 86 1086 117 HOH HOH . E 5 HOH A 87 1087 41 HOH HOH . E 5 HOH A 88 1088 332 HOH HOH . E 5 HOH A 89 1089 269 HOH HOH . E 5 HOH A 90 1090 260 HOH HOH . E 5 HOH A 91 1091 156 HOH HOH . E 5 HOH A 92 1092 29 HOH HOH . E 5 HOH A 93 1093 141 HOH HOH . E 5 HOH A 94 1094 9 HOH HOH . E 5 HOH A 95 1095 142 HOH HOH . E 5 HOH A 96 1096 330 HOH HOH . E 5 HOH A 97 1097 147 HOH HOH . E 5 HOH A 98 1098 340 HOH HOH . E 5 HOH A 99 1099 341 HOH HOH . E 5 HOH A 100 1100 178 HOH HOH . E 5 HOH A 101 1101 241 HOH HOH . E 5 HOH A 102 1102 34 HOH HOH . E 5 HOH A 103 1103 337 HOH HOH . E 5 HOH A 104 1104 217 HOH HOH . E 5 HOH A 105 1105 110 HOH HOH . E 5 HOH A 106 1106 89 HOH HOH . E 5 HOH A 107 1107 272 HOH HOH . E 5 HOH A 108 1108 331 HOH HOH . E 5 HOH A 109 1109 97 HOH HOH . E 5 HOH A 110 1110 144 HOH HOH . E 5 HOH A 111 1111 223 HOH HOH . E 5 HOH A 112 1112 26 HOH HOH . E 5 HOH A 113 1113 154 HOH HOH . E 5 HOH A 114 1114 28 HOH HOH . E 5 HOH A 115 1115 64 HOH HOH . E 5 HOH A 116 1116 187 HOH HOH . E 5 HOH A 117 1117 128 HOH HOH . E 5 HOH A 118 1118 203 HOH HOH . E 5 HOH A 119 1119 163 HOH HOH . E 5 HOH A 120 1120 56 HOH HOH . E 5 HOH A 121 1121 108 HOH HOH . E 5 HOH A 122 1122 152 HOH HOH . E 5 HOH A 123 1123 78 HOH HOH . E 5 HOH A 124 1124 55 HOH HOH . E 5 HOH A 125 1125 33 HOH HOH . E 5 HOH A 126 1126 146 HOH HOH . E 5 HOH A 127 1127 167 HOH HOH . E 5 HOH A 128 1128 18 HOH HOH . E 5 HOH A 129 1129 57 HOH HOH . E 5 HOH A 130 1130 252 HOH HOH . E 5 HOH A 131 1131 126 HOH HOH . E 5 HOH A 132 1132 106 HOH HOH . E 5 HOH A 133 1133 91 HOH HOH . E 5 HOH A 134 1134 14 HOH HOH . E 5 HOH A 135 1135 364 HOH HOH . E 5 HOH A 136 1136 113 HOH HOH . E 5 HOH A 137 1137 162 HOH HOH . E 5 HOH A 138 1138 109 HOH HOH . E 5 HOH A 139 1139 165 HOH HOH . E 5 HOH A 140 1140 348 HOH HOH . E 5 HOH A 141 1141 191 HOH HOH . E 5 HOH A 142 1142 54 HOH HOH . E 5 HOH A 143 1143 74 HOH HOH . E 5 HOH A 144 1144 356 HOH HOH . E 5 HOH A 145 1145 58 HOH HOH . E 5 HOH A 146 1146 138 HOH HOH . E 5 HOH A 147 1147 353 HOH HOH . E 5 HOH A 148 1148 334 HOH HOH . E 5 HOH A 149 1149 3 HOH HOH . E 5 HOH A 150 1150 298 HOH HOH . E 5 HOH A 151 1151 181 HOH HOH . E 5 HOH A 152 1152 204 HOH HOH . E 5 HOH A 153 1153 8 HOH HOH . E 5 HOH A 154 1154 210 HOH HOH . E 5 HOH A 155 1155 52 HOH HOH . E 5 HOH A 156 1156 23 HOH HOH . E 5 HOH A 157 1157 93 HOH HOH . E 5 HOH A 158 1158 232 HOH HOH . E 5 HOH A 159 1159 51 HOH HOH . E 5 HOH A 160 1160 49 HOH HOH . E 5 HOH A 161 1161 116 HOH HOH . E 5 HOH A 162 1162 36 HOH HOH . E 5 HOH A 163 1163 184 HOH HOH . E 5 HOH A 164 1164 111 HOH HOH . E 5 HOH A 165 1165 321 HOH HOH . E 5 HOH A 166 1166 169 HOH HOH . E 5 HOH A 167 1167 15 HOH HOH . E 5 HOH A 168 1168 123 HOH HOH . E 5 HOH A 169 1169 280 HOH HOH . E 5 HOH A 170 1170 131 HOH HOH . E 5 HOH A 171 1171 194 HOH HOH . E 5 HOH A 172 1172 83 HOH HOH . E 5 HOH A 173 1173 73 HOH HOH . E 5 HOH A 174 1174 40 HOH HOH . E 5 HOH A 175 1175 112 HOH HOH . E 5 HOH A 176 1176 151 HOH HOH . E 5 HOH A 177 1177 43 HOH HOH . E 5 HOH A 178 1178 180 HOH HOH . E 5 HOH A 179 1179 219 HOH HOH . E 5 HOH A 180 1180 66 HOH HOH . E 5 HOH A 181 1181 44 HOH HOH . E 5 HOH A 182 1182 254 HOH HOH . E 5 HOH A 183 1183 360 HOH HOH . E 5 HOH A 184 1184 121 HOH HOH . E 5 HOH A 185 1185 77 HOH HOH . E 5 HOH A 186 1186 253 HOH HOH . E 5 HOH A 187 1187 12 HOH HOH . E 5 HOH A 188 1188 127 HOH HOH . E 5 HOH A 189 1189 72 HOH HOH . E 5 HOH A 190 1190 25 HOH HOH . E 5 HOH A 191 1191 363 HOH HOH . E 5 HOH A 192 1192 339 HOH HOH . E 5 HOH A 193 1193 247 HOH HOH . E 5 HOH A 194 1194 2 HOH HOH . E 5 HOH A 195 1195 70 HOH HOH . E 5 HOH A 196 1196 307 HOH HOH . E 5 HOH A 197 1197 32 HOH HOH . E 5 HOH A 198 1198 202 HOH HOH . E 5 HOH A 199 1199 289 HOH HOH . E 5 HOH A 200 1200 347 HOH HOH . E 5 HOH A 201 1201 207 HOH HOH . E 5 HOH A 202 1202 318 HOH HOH . E 5 HOH A 203 1203 189 HOH HOH . E 5 HOH A 204 1204 20 HOH HOH . E 5 HOH A 205 1205 354 HOH HOH . E 5 HOH A 206 1206 150 HOH HOH . E 5 HOH A 207 1207 199 HOH HOH . E 5 HOH A 208 1208 198 HOH HOH . E 5 HOH A 209 1209 295 HOH HOH . E 5 HOH A 210 1210 349 HOH HOH . E 5 HOH A 211 1211 242 HOH HOH . E 5 HOH A 212 1212 325 HOH HOH . E 5 HOH A 213 1213 358 HOH HOH . E 5 HOH A 214 1214 39 HOH HOH . E 5 HOH A 215 1215 88 HOH HOH . E 5 HOH A 216 1216 336 HOH HOH . E 5 HOH A 217 1217 186 HOH HOH . E 5 HOH A 218 1218 246 HOH HOH . E 5 HOH A 219 1219 124 HOH HOH . E 5 HOH A 220 1220 265 HOH HOH . E 5 HOH A 221 1221 177 HOH HOH . E 5 HOH A 222 1222 351 HOH HOH . E 5 HOH A 223 1223 357 HOH HOH . E 5 HOH A 224 1224 326 HOH HOH . E 5 HOH A 225 1225 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 4 24.555 25.643 30.185 1 16.89 ? N1 PLP 903 A 1 HETATM 2 C C2 PLP . . . D 4 23.504 24.87 30.446 1 15.53 ? C2 PLP 903 A 1 HETATM 3 C C2A PLP . . . D 4 22.55 25.306 31.507 1 15.57 ? C2A PLP 903 A 1 HETATM 4 C C3 PLP . . . D 4 23.283 23.692 29.729 1 16.38 ? C3 PLP 903 A 1 HETATM 5 O O3 PLP . . . D 4 22.191 22.939 30.043 1 18.38 ? O3 PLP 903 A 1 HETATM 6 C C4 PLP . . . D 4 24.194 23.312 28.733 1 15.57 ? C4 PLP 903 A 1 HETATM 7 C C4A PLP . . . D 4 23.961 22.063 27.988 1 18.12 ? C4A PLP 903 A 1 HETATM 8 C C5 PLP . . . D 4 25.305 24.145 28.491 1 16.78 ? C5 PLP 903 A 1 HETATM 9 C C6 PLP . . . D 4 25.427 25.294 29.222 1 16.14 ? C6 PLP 903 A 1 HETATM 10 C C5A PLP . . . D 4 26.331 23.867 27.424 1 15.28 ? C5A PLP 903 A 1 HETATM 11 O O4P PLP . . . D 4 25.853 24.486 26.192 1 15.36 ? O4P PLP 903 A 1 HETATM 12 P P PLP . . . D 4 26.845 24.824 24.972 1 18.09 ? P PLP 903 A 1 HETATM 13 O O1P PLP . . . D 4 25.961 25.333 23.858 1 17.91 ? O1P PLP 903 A 1 HETATM 14 O O2P PLP . . . D 4 27.784 25.9 25.525 1 13.05 ? O2P PLP 903 A 1 HETATM 15 O O3P PLP . . . D 4 27.505 23.489 24.654 1 13.42 ? O3P PLP 903 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #