data_6S4O # _model_server_result.job_id 7JB3kpNyROwKw9919ohpIA _model_server_result.datetime_utc '2024-11-26 23:27:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 6S4O # _exptl.entry_id 6S4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S4O _cell.length_a 128.207 _cell.length_b 128.207 _cell.length_c 115.941 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 115.941 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.283 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6S4O _atom_sites.fract_transf_matrix[1][1] 0.0078 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KV5 A 1 901 901 KV5 290 . C 3 PLP A 1 902 920 PLP PLP . D 4 IMP A 1 903 930 IMP IMP . E 5 HOH A 1 1001 46 HOH HOH . E 5 HOH A 2 1002 357 HOH HOH . E 5 HOH A 3 1003 271 HOH HOH . E 5 HOH A 4 1004 140 HOH HOH . E 5 HOH A 5 1005 185 HOH HOH . E 5 HOH A 6 1006 137 HOH HOH . E 5 HOH A 7 1007 235 HOH HOH . E 5 HOH A 8 1008 13 HOH HOH . E 5 HOH A 9 1009 341 HOH HOH . E 5 HOH A 10 1010 155 HOH HOH . E 5 HOH A 11 1011 19 HOH HOH . E 5 HOH A 12 1012 309 HOH HOH . E 5 HOH A 13 1013 94 HOH HOH . E 5 HOH A 14 1014 96 HOH HOH . E 5 HOH A 15 1015 65 HOH HOH . E 5 HOH A 16 1016 340 HOH HOH . E 5 HOH A 17 1017 130 HOH HOH . E 5 HOH A 18 1018 11 HOH HOH . E 5 HOH A 19 1019 158 HOH HOH . E 5 HOH A 20 1020 67 HOH HOH . E 5 HOH A 21 1021 122 HOH HOH . E 5 HOH A 22 1022 229 HOH HOH . E 5 HOH A 23 1023 173 HOH HOH . E 5 HOH A 24 1024 92 HOH HOH . E 5 HOH A 25 1025 16 HOH HOH . E 5 HOH A 26 1026 50 HOH HOH . E 5 HOH A 27 1027 17 HOH HOH . E 5 HOH A 28 1028 80 HOH HOH . E 5 HOH A 29 1029 53 HOH HOH . E 5 HOH A 30 1030 90 HOH HOH . E 5 HOH A 31 1031 139 HOH HOH . E 5 HOH A 32 1032 119 HOH HOH . E 5 HOH A 33 1033 164 HOH HOH . E 5 HOH A 34 1034 82 HOH HOH . E 5 HOH A 35 1035 348 HOH HOH . E 5 HOH A 36 1036 153 HOH HOH . E 5 HOH A 37 1037 205 HOH HOH . E 5 HOH A 38 1038 87 HOH HOH . E 5 HOH A 39 1039 110 HOH HOH . E 5 HOH A 40 1040 258 HOH HOH . E 5 HOH A 41 1041 226 HOH HOH . E 5 HOH A 42 1042 85 HOH HOH . E 5 HOH A 43 1043 148 HOH HOH . E 5 HOH A 44 1044 75 HOH HOH . E 5 HOH A 45 1045 166 HOH HOH . E 5 HOH A 46 1046 342 HOH HOH . E 5 HOH A 47 1047 133 HOH HOH . E 5 HOH A 48 1048 168 HOH HOH . E 5 HOH A 49 1049 59 HOH HOH . E 5 HOH A 50 1050 45 HOH HOH . E 5 HOH A 51 1051 4 HOH HOH . E 5 HOH A 52 1052 31 HOH HOH . E 5 HOH A 53 1053 132 HOH HOH . E 5 HOH A 54 1054 21 HOH HOH . E 5 HOH A 55 1055 176 HOH HOH . E 5 HOH A 56 1056 159 HOH HOH . E 5 HOH A 57 1057 264 HOH HOH . E 5 HOH A 58 1058 244 HOH HOH . E 5 HOH A 59 1059 37 HOH HOH . E 5 HOH A 60 1060 209 HOH HOH . E 5 HOH A 61 1061 203 HOH HOH . E 5 HOH A 62 1062 78 HOH HOH . E 5 HOH A 63 1063 330 HOH HOH . E 5 HOH A 64 1064 262 HOH HOH . E 5 HOH A 65 1065 117 HOH HOH . E 5 HOH A 66 1066 216 HOH HOH . E 5 HOH A 67 1067 22 HOH HOH . E 5 HOH A 68 1068 312 HOH HOH . E 5 HOH A 69 1069 134 HOH HOH . E 5 HOH A 70 1070 118 HOH HOH . E 5 HOH A 71 1071 288 HOH HOH . E 5 HOH A 72 1072 98 HOH HOH . E 5 HOH A 73 1073 196 HOH HOH . E 5 HOH A 74 1074 23 HOH HOH . E 5 HOH A 75 1075 84 HOH HOH . E 5 HOH A 76 1076 334 HOH HOH . E 5 HOH A 77 1077 81 HOH HOH . E 5 HOH A 78 1078 187 HOH HOH . E 5 HOH A 79 1079 329 HOH HOH . E 5 HOH A 80 1080 30 HOH HOH . E 5 HOH A 81 1081 144 HOH HOH . E 5 HOH A 82 1082 333 HOH HOH . E 5 HOH A 83 1083 93 HOH HOH . E 5 HOH A 84 1084 300 HOH HOH . E 5 HOH A 85 1085 142 HOH HOH . E 5 HOH A 86 1086 7 HOH HOH . E 5 HOH A 87 1087 225 HOH HOH . E 5 HOH A 88 1088 29 HOH HOH . E 5 HOH A 89 1089 331 HOH HOH . E 5 HOH A 90 1090 135 HOH HOH . E 5 HOH A 91 1091 76 HOH HOH . E 5 HOH A 92 1092 143 HOH HOH . E 5 HOH A 93 1093 128 HOH HOH . E 5 HOH A 94 1094 356 HOH HOH . E 5 HOH A 95 1095 237 HOH HOH . E 5 HOH A 96 1096 89 HOH HOH . E 5 HOH A 97 1097 206 HOH HOH . E 5 HOH A 98 1098 149 HOH HOH . E 5 HOH A 99 1099 195 HOH HOH . E 5 HOH A 100 1100 120 HOH HOH . E 5 HOH A 101 1101 212 HOH HOH . E 5 HOH A 102 1102 169 HOH HOH . E 5 HOH A 103 1103 33 HOH HOH . E 5 HOH A 104 1104 97 HOH HOH . E 5 HOH A 105 1105 194 HOH HOH . E 5 HOH A 106 1106 311 HOH HOH . E 5 HOH A 107 1107 18 HOH HOH . E 5 HOH A 108 1108 129 HOH HOH . E 5 HOH A 109 1109 350 HOH HOH . E 5 HOH A 110 1110 14 HOH HOH . E 5 HOH A 111 1111 79 HOH HOH . E 5 HOH A 112 1112 95 HOH HOH . E 5 HOH A 113 1113 351 HOH HOH . E 5 HOH A 114 1114 361 HOH HOH . E 5 HOH A 115 1115 34 HOH HOH . E 5 HOH A 116 1116 49 HOH HOH . E 5 HOH A 117 1117 64 HOH HOH . E 5 HOH A 118 1118 188 HOH HOH . E 5 HOH A 119 1119 286 HOH HOH . E 5 HOH A 120 1120 208 HOH HOH . E 5 HOH A 121 1121 255 HOH HOH . E 5 HOH A 122 1122 147 HOH HOH . E 5 HOH A 123 1123 38 HOH HOH . E 5 HOH A 124 1124 156 HOH HOH . E 5 HOH A 125 1125 160 HOH HOH . E 5 HOH A 126 1126 202 HOH HOH . E 5 HOH A 127 1127 48 HOH HOH . E 5 HOH A 128 1128 107 HOH HOH . E 5 HOH A 129 1129 214 HOH HOH . E 5 HOH A 130 1130 178 HOH HOH . E 5 HOH A 131 1131 338 HOH HOH . E 5 HOH A 132 1132 154 HOH HOH . E 5 HOH A 133 1133 354 HOH HOH . E 5 HOH A 134 1134 52 HOH HOH . E 5 HOH A 135 1135 6 HOH HOH . E 5 HOH A 136 1136 141 HOH HOH . E 5 HOH A 137 1137 55 HOH HOH . E 5 HOH A 138 1138 163 HOH HOH . E 5 HOH A 139 1139 191 HOH HOH . E 5 HOH A 140 1140 260 HOH HOH . E 5 HOH A 141 1141 73 HOH HOH . E 5 HOH A 142 1142 165 HOH HOH . E 5 HOH A 143 1143 56 HOH HOH . E 5 HOH A 144 1144 358 HOH HOH . E 5 HOH A 145 1145 74 HOH HOH . E 5 HOH A 146 1146 252 HOH HOH . E 5 HOH A 147 1147 321 HOH HOH . E 5 HOH A 148 1148 112 HOH HOH . E 5 HOH A 149 1149 123 HOH HOH . E 5 HOH A 150 1150 10 HOH HOH . E 5 HOH A 151 1151 41 HOH HOH . E 5 HOH A 152 1152 116 HOH HOH . E 5 HOH A 153 1153 51 HOH HOH . E 5 HOH A 154 1154 167 HOH HOH . E 5 HOH A 155 1155 91 HOH HOH . E 5 HOH A 156 1156 57 HOH HOH . E 5 HOH A 157 1157 36 HOH HOH . E 5 HOH A 158 1158 146 HOH HOH . E 5 HOH A 159 1159 111 HOH HOH . E 5 HOH A 160 1160 301 HOH HOH . E 5 HOH A 161 1161 204 HOH HOH . E 5 HOH A 162 1162 108 HOH HOH . E 5 HOH A 163 1163 126 HOH HOH . E 5 HOH A 164 1164 181 HOH HOH . E 5 HOH A 165 1165 8 HOH HOH . E 5 HOH A 166 1166 40 HOH HOH . E 5 HOH A 167 1167 54 HOH HOH . E 5 HOH A 168 1168 9 HOH HOH . E 5 HOH A 169 1169 272 HOH HOH . E 5 HOH A 170 1170 109 HOH HOH . E 5 HOH A 171 1171 327 HOH HOH . E 5 HOH A 172 1172 232 HOH HOH . E 5 HOH A 173 1173 162 HOH HOH . E 5 HOH A 174 1174 210 HOH HOH . E 5 HOH A 175 1175 83 HOH HOH . E 5 HOH A 176 1176 152 HOH HOH . E 5 HOH A 177 1177 113 HOH HOH . E 5 HOH A 178 1178 359 HOH HOH . E 5 HOH A 179 1179 77 HOH HOH . E 5 HOH A 180 1180 138 HOH HOH . E 5 HOH A 181 1181 5 HOH HOH . E 5 HOH A 182 1182 332 HOH HOH . E 5 HOH A 183 1183 106 HOH HOH . E 5 HOH A 184 1184 2 HOH HOH . E 5 HOH A 185 1185 44 HOH HOH . E 5 HOH A 186 1186 198 HOH HOH . E 5 HOH A 187 1187 223 HOH HOH . E 5 HOH A 188 1188 217 HOH HOH . E 5 HOH A 189 1189 248 HOH HOH . E 5 HOH A 190 1190 3 HOH HOH . E 5 HOH A 191 1191 353 HOH HOH . E 5 HOH A 192 1192 66 HOH HOH . E 5 HOH A 193 1193 26 HOH HOH . E 5 HOH A 194 1194 344 HOH HOH . E 5 HOH A 195 1195 32 HOH HOH . E 5 HOH A 196 1196 280 HOH HOH . E 5 HOH A 197 1197 28 HOH HOH . E 5 HOH A 198 1198 219 HOH HOH . E 5 HOH A 199 1199 189 HOH HOH . E 5 HOH A 200 1200 131 HOH HOH . E 5 HOH A 201 1201 12 HOH HOH . E 5 HOH A 202 1202 121 HOH HOH . E 5 HOH A 203 1203 190 HOH HOH . E 5 HOH A 204 1204 199 HOH HOH . E 5 HOH A 205 1205 72 HOH HOH . E 5 HOH A 206 1206 320 HOH HOH . E 5 HOH A 207 1207 58 HOH HOH . E 5 HOH A 208 1208 70 HOH HOH . E 5 HOH A 209 1209 20 HOH HOH . E 5 HOH A 210 1210 207 HOH HOH . E 5 HOH A 211 1211 25 HOH HOH . E 5 HOH A 212 1212 284 HOH HOH . E 5 HOH A 213 1213 220 HOH HOH . E 5 HOH A 214 1214 184 HOH HOH . E 5 HOH A 215 1215 363 HOH HOH . E 5 HOH A 216 1216 150 HOH HOH . E 5 HOH A 217 1217 339 HOH HOH . E 5 HOH A 218 1218 43 HOH HOH . E 5 HOH A 219 1219 253 HOH HOH . E 5 HOH A 220 1220 171 HOH HOH . E 5 HOH A 221 1221 127 HOH HOH . E 5 HOH A 222 1222 24 HOH HOH . E 5 HOH A 223 1223 360 HOH HOH . E 5 HOH A 224 1224 238 HOH HOH . E 5 HOH A 225 1225 346 HOH HOH . E 5 HOH A 226 1226 247 HOH HOH . E 5 HOH A 227 1227 307 HOH HOH . E 5 HOH A 228 1228 362 HOH HOH . E 5 HOH A 229 1229 242 HOH HOH . E 5 HOH A 230 1230 326 HOH HOH . E 5 HOH A 231 1231 322 HOH HOH . E 5 HOH A 232 1232 328 HOH HOH . E 5 HOH A 233 1233 39 HOH HOH . E 5 HOH A 234 1234 115 HOH HOH . E 5 HOH A 235 1235 246 HOH HOH . E 5 HOH A 236 1236 186 HOH HOH . E 5 HOH A 237 1237 88 HOH HOH . E 5 HOH A 238 1238 124 HOH HOH . E 5 HOH A 239 1239 336 HOH HOH . E 5 HOH A 240 1240 268 HOH HOH . E 5 HOH A 241 1241 105 HOH HOH . E 5 HOH A 242 1242 335 HOH HOH . E 5 HOH A 243 1243 355 HOH HOH . E 5 HOH A 244 1244 352 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 24.535 25.638 30.251 1 14.77 ? N1 PLP 902 A 1 HETATM 2 C C2 PLP . . . C 3 23.47 24.883 30.503 1 13.69 ? C2 PLP 902 A 1 HETATM 3 C C2A PLP . . . C 3 22.517 25.344 31.55 1 14.14 ? C2A PLP 902 A 1 HETATM 4 C C3 PLP . . . C 3 23.235 23.716 29.787 1 13.98 ? C3 PLP 902 A 1 HETATM 5 O O3 PLP . . . C 3 22.113 22.997 30.059 1 15.22 ? O3 PLP 902 A 1 HETATM 6 C C4 PLP . . . C 3 24.139 23.332 28.782 1 14.82 ? C4 PLP 902 A 1 HETATM 7 C C4A PLP . . . C 3 23.894 22.089 28.041 1 15.06 ? C4A PLP 902 A 1 HETATM 8 C C5 PLP . . . C 3 25.27 24.14 28.548 1 14.79 ? C5 PLP 902 A 1 HETATM 9 C C6 PLP . . . C 3 25.425 25.261 29.313 1 14.67 ? C6 PLP 902 A 1 HETATM 10 C C5A PLP . . . C 3 26.294 23.839 27.491 1 15.11 ? C5A PLP 902 A 1 HETATM 11 O O4P PLP . . . C 3 25.858 24.483 26.259 1 15.15 ? O4P PLP 902 A 1 HETATM 12 P P PLP . . . C 3 26.86 24.797 25.033 1 17.66 ? P PLP 902 A 1 HETATM 13 O O1P PLP . . . C 3 25.929 25.383 23.986 1 18.58 ? O1P PLP 902 A 1 HETATM 14 O O2P PLP . . . C 3 27.89 25.822 25.522 1 15.52 ? O2P PLP 902 A 1 HETATM 15 O O3P PLP . . . C 3 27.507 23.481 24.635 1 16.32 ? O3P PLP 902 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #