data_6S4P # _model_server_result.job_id ayuTa5aqH-XH7nvooSVv8A _model_server_result.datetime_utc '2024-11-30 07:11:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 6S4P # _exptl.entry_id 6S4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S4P _cell.length_a 127.946 _cell.length_b 127.946 _cell.length_c 115.796 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 115.796 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.274 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6S4P _atom_sites.fract_transf_matrix[1][1] 0.007816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KVE A 1 901 901 KVE 878 . C 3 PLP A 1 902 920 PLP PLP . D 4 HOH A 1 1001 96 HOH HOH . D 4 HOH A 2 1002 235 HOH HOH . D 4 HOH A 3 1003 19 HOH HOH . D 4 HOH A 4 1004 46 HOH HOH . D 4 HOH A 5 1005 92 HOH HOH . D 4 HOH A 6 1006 87 HOH HOH . D 4 HOH A 7 1007 133 HOH HOH . D 4 HOH A 8 1008 153 HOH HOH . D 4 HOH A 9 1009 137 HOH HOH . D 4 HOH A 10 1010 13 HOH HOH . D 4 HOH A 11 1011 161 HOH HOH . D 4 HOH A 12 1012 175 HOH HOH . D 4 HOH A 13 1013 53 HOH HOH . D 4 HOH A 14 1014 85 HOH HOH . D 4 HOH A 15 1015 243 HOH HOH . D 4 HOH A 16 1016 67 HOH HOH . D 4 HOH A 17 1017 164 HOH HOH . D 4 HOH A 18 1018 75 HOH HOH . D 4 HOH A 19 1019 327 HOH HOH . D 4 HOH A 20 1020 122 HOH HOH . D 4 HOH A 21 1021 119 HOH HOH . D 4 HOH A 22 1022 48 HOH HOH . D 4 HOH A 23 1023 155 HOH HOH . D 4 HOH A 24 1024 311 HOH HOH . D 4 HOH A 25 1025 240 HOH HOH . D 4 HOH A 26 1026 158 HOH HOH . D 4 HOH A 27 1027 204 HOH HOH . D 4 HOH A 28 1028 134 HOH HOH . D 4 HOH A 29 1029 229 HOH HOH . D 4 HOH A 30 1030 346 HOH HOH . D 4 HOH A 31 1031 173 HOH HOH . D 4 HOH A 32 1032 4 HOH HOH . D 4 HOH A 33 1033 159 HOH HOH . D 4 HOH A 34 1034 99 HOH HOH . D 4 HOH A 35 1035 130 HOH HOH . D 4 HOH A 36 1036 148 HOH HOH . D 4 HOH A 37 1037 107 HOH HOH . D 4 HOH A 38 1038 94 HOH HOH . D 4 HOH A 39 1039 81 HOH HOH . D 4 HOH A 40 1040 65 HOH HOH . D 4 HOH A 41 1041 145 HOH HOH . D 4 HOH A 42 1042 80 HOH HOH . D 4 HOH A 43 1043 17 HOH HOH . D 4 HOH A 44 1044 16 HOH HOH . D 4 HOH A 45 1045 202 HOH HOH . D 4 HOH A 46 1046 260 HOH HOH . D 4 HOH A 47 1047 110 HOH HOH . D 4 HOH A 48 1048 352 HOH HOH . D 4 HOH A 49 1049 226 HOH HOH . D 4 HOH A 50 1050 55 HOH HOH . D 4 HOH A 51 1051 176 HOH HOH . D 4 HOH A 52 1052 168 HOH HOH . D 4 HOH A 53 1053 129 HOH HOH . D 4 HOH A 54 1054 37 HOH HOH . D 4 HOH A 55 1055 120 HOH HOH . D 4 HOH A 56 1056 301 HOH HOH . D 4 HOH A 57 1057 10 HOH HOH . D 4 HOH A 58 1058 118 HOH HOH . D 4 HOH A 59 1059 90 HOH HOH . D 4 HOH A 60 1060 89 HOH HOH . D 4 HOH A 61 1061 117 HOH HOH . D 4 HOH A 62 1062 239 HOH HOH . D 4 HOH A 63 1063 83 HOH HOH . D 4 HOH A 64 1064 331 HOH HOH . D 4 HOH A 65 1065 353 HOH HOH . D 4 HOH A 66 1066 59 HOH HOH . D 4 HOH A 67 1067 30 HOH HOH . D 4 HOH A 68 1068 132 HOH HOH . D 4 HOH A 69 1069 147 HOH HOH . D 4 HOH A 70 1070 7 HOH HOH . D 4 HOH A 71 1071 183 HOH HOH . D 4 HOH A 72 1072 64 HOH HOH . D 4 HOH A 73 1073 208 HOH HOH . D 4 HOH A 74 1074 135 HOH HOH . D 4 HOH A 75 1075 191 HOH HOH . D 4 HOH A 76 1076 95 HOH HOH . D 4 HOH A 77 1077 225 HOH HOH . D 4 HOH A 78 1078 166 HOH HOH . D 4 HOH A 79 1079 79 HOH HOH . D 4 HOH A 80 1080 154 HOH HOH . D 4 HOH A 81 1081 5 HOH HOH . D 4 HOH A 82 1082 142 HOH HOH . D 4 HOH A 83 1083 156 HOH HOH . D 4 HOH A 84 1084 203 HOH HOH . D 4 HOH A 85 1085 187 HOH HOH . D 4 HOH A 86 1086 29 HOH HOH . D 4 HOH A 87 1087 45 HOH HOH . D 4 HOH A 88 1088 342 HOH HOH . D 4 HOH A 89 1089 97 HOH HOH . D 4 HOH A 90 1090 34 HOH HOH . D 4 HOH A 91 1091 349 HOH HOH . D 4 HOH A 92 1092 144 HOH HOH . D 4 HOH A 93 1093 334 HOH HOH . D 4 HOH A 94 1094 22 HOH HOH . D 4 HOH A 95 1095 84 HOH HOH . D 4 HOH A 96 1096 21 HOH HOH . D 4 HOH A 97 1097 163 HOH HOH . D 4 HOH A 98 1098 78 HOH HOH . D 4 HOH A 99 1099 300 HOH HOH . D 4 HOH A 100 1100 9 HOH HOH . D 4 HOH A 101 1101 160 HOH HOH . D 4 HOH A 102 1102 38 HOH HOH . D 4 HOH A 103 1103 354 HOH HOH . D 4 HOH A 104 1104 109 HOH HOH . D 4 HOH A 105 1105 214 HOH HOH . D 4 HOH A 106 1106 116 HOH HOH . D 4 HOH A 107 1107 322 HOH HOH . D 4 HOH A 108 1108 178 HOH HOH . D 4 HOH A 109 1109 162 HOH HOH . D 4 HOH A 110 1110 269 HOH HOH . D 4 HOH A 111 1111 126 HOH HOH . D 4 HOH A 112 1112 52 HOH HOH . D 4 HOH A 113 1113 98 HOH HOH . D 4 HOH A 114 1114 31 HOH HOH . D 4 HOH A 115 1115 219 HOH HOH . D 4 HOH A 116 1116 41 HOH HOH . D 4 HOH A 117 1117 252 HOH HOH . D 4 HOH A 118 1118 91 HOH HOH . D 4 HOH A 119 1119 108 HOH HOH . D 4 HOH A 120 1120 18 HOH HOH . D 4 HOH A 121 1121 141 HOH HOH . D 4 HOH A 122 1122 128 HOH HOH . D 4 HOH A 123 1123 15 HOH HOH . D 4 HOH A 124 1124 321 HOH HOH . D 4 HOH A 125 1125 165 HOH HOH . D 4 HOH A 126 1126 56 HOH HOH . D 4 HOH A 127 1127 73 HOH HOH . D 4 HOH A 128 1128 146 HOH HOH . D 4 HOH A 129 1129 210 HOH HOH . D 4 HOH A 130 1130 180 HOH HOH . D 4 HOH A 131 1131 8 HOH HOH . D 4 HOH A 132 1132 111 HOH HOH . D 4 HOH A 133 1133 347 HOH HOH . D 4 HOH A 134 1134 33 HOH HOH . D 4 HOH A 135 1135 54 HOH HOH . D 4 HOH A 136 1136 112 HOH HOH . D 4 HOH A 137 1137 206 HOH HOH . D 4 HOH A 138 1138 123 HOH HOH . D 4 HOH A 139 1139 49 HOH HOH . D 4 HOH A 140 1140 272 HOH HOH . D 4 HOH A 141 1141 217 HOH HOH . D 4 HOH A 142 1142 76 HOH HOH . D 4 HOH A 143 1143 113 HOH HOH . D 4 HOH A 144 1144 93 HOH HOH . D 4 HOH A 145 1145 44 HOH HOH . D 4 HOH A 146 1146 121 HOH HOH . D 4 HOH A 147 1147 3 HOH HOH . D 4 HOH A 148 1148 333 HOH HOH . D 4 HOH A 149 1149 152 HOH HOH . D 4 HOH A 150 1150 254 HOH HOH . D 4 HOH A 151 1151 51 HOH HOH . D 4 HOH A 152 1152 167 HOH HOH . D 4 HOH A 153 1153 194 HOH HOH . D 4 HOH A 154 1154 106 HOH HOH . D 4 HOH A 155 1155 188 HOH HOH . D 4 HOH A 156 1156 14 HOH HOH . D 4 HOH A 157 1157 66 HOH HOH . D 4 HOH A 158 1158 6 HOH HOH . D 4 HOH A 159 1159 280 HOH HOH . D 4 HOH A 160 1160 232 HOH HOH . D 4 HOH A 161 1161 74 HOH HOH . D 4 HOH A 162 1162 255 HOH HOH . D 4 HOH A 163 1163 184 HOH HOH . D 4 HOH A 164 1164 57 HOH HOH . D 4 HOH A 165 1165 189 HOH HOH . D 4 HOH A 166 1166 181 HOH HOH . D 4 HOH A 167 1167 23 HOH HOH . D 4 HOH A 168 1168 335 HOH HOH . D 4 HOH A 169 1169 127 HOH HOH . D 4 HOH A 170 1170 70 HOH HOH . D 4 HOH A 171 1171 40 HOH HOH . D 4 HOH A 172 1172 77 HOH HOH . D 4 HOH A 173 1173 223 HOH HOH . D 4 HOH A 174 1174 131 HOH HOH . D 4 HOH A 175 1175 2 HOH HOH . D 4 HOH A 176 1176 172 HOH HOH . D 4 HOH A 177 1177 336 HOH HOH . D 4 HOH A 178 1178 220 HOH HOH . D 4 HOH A 179 1179 25 HOH HOH . D 4 HOH A 180 1180 355 HOH HOH . D 4 HOH A 181 1181 28 HOH HOH . D 4 HOH A 182 1182 72 HOH HOH . D 4 HOH A 183 1183 199 HOH HOH . D 4 HOH A 184 1184 12 HOH HOH . D 4 HOH A 185 1185 284 HOH HOH . D 4 HOH A 186 1186 338 HOH HOH . D 4 HOH A 187 1187 43 HOH HOH . D 4 HOH A 188 1188 305 HOH HOH . D 4 HOH A 189 1189 63 HOH HOH . D 4 HOH A 190 1190 295 HOH HOH . D 4 HOH A 191 1191 351 HOH HOH . D 4 HOH A 192 1192 238 HOH HOH . D 4 HOH A 193 1193 190 HOH HOH . D 4 HOH A 194 1194 169 HOH HOH . D 4 HOH A 195 1195 201 HOH HOH . D 4 HOH A 196 1196 320 HOH HOH . D 4 HOH A 197 1197 253 HOH HOH . D 4 HOH A 198 1198 193 HOH HOH . D 4 HOH A 199 1199 150 HOH HOH . D 4 HOH A 200 1200 20 HOH HOH . D 4 HOH A 201 1201 329 HOH HOH . D 4 HOH A 202 1202 326 HOH HOH . D 4 HOH A 203 1203 247 HOH HOH . D 4 HOH A 204 1204 32 HOH HOH . D 4 HOH A 205 1205 242 HOH HOH . D 4 HOH A 206 1206 345 HOH HOH . D 4 HOH A 207 1207 115 HOH HOH . D 4 HOH A 208 1208 88 HOH HOH . D 4 HOH A 209 1209 246 HOH HOH . D 4 HOH A 210 1210 198 HOH HOH . D 4 HOH A 211 1211 39 HOH HOH . D 4 HOH A 212 1212 325 HOH HOH . D 4 HOH A 213 1213 231 HOH HOH . D 4 HOH A 214 1214 205 HOH HOH . D 4 HOH A 215 1215 332 HOH HOH . D 4 HOH A 216 1216 341 HOH HOH . D 4 HOH A 217 1217 330 HOH HOH . D 4 HOH A 218 1218 186 HOH HOH . D 4 HOH A 219 1219 266 HOH HOH . D 4 HOH A 220 1220 324 HOH HOH . D 4 HOH A 221 1221 350 HOH HOH . D 4 HOH A 222 1222 339 HOH HOH . D 4 HOH A 223 1223 348 HOH HOH . D 4 HOH A 224 1224 105 HOH HOH . D 4 HOH A 225 1225 323 HOH HOH . D 4 HOH A 226 1226 356 HOH HOH . D 4 HOH A 227 1227 343 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 24.459 25.486 30.21 1 18.95 ? N1 PLP 902 A 1 HETATM 2 C C2 PLP . . . C 3 23.393 24.724 30.443 1 17.33 ? C2 PLP 902 A 1 HETATM 3 C C2A PLP . . . C 3 22.427 25.148 31.498 1 17.09 ? C2A PLP 902 A 1 HETATM 4 C C3 PLP . . . C 3 23.188 23.558 29.718 1 18.16 ? C3 PLP 902 A 1 HETATM 5 O O3 PLP . . . C 3 22.09 22.792 29.992 1 19.35 ? O3 PLP 902 A 1 HETATM 6 C C4 PLP . . . C 3 24.112 23.188 28.731 1 18.91 ? C4 PLP 902 A 1 HETATM 7 C C4A PLP . . . C 3 23.884 21.936 27.998 1 19.9 ? C4A PLP 902 A 1 HETATM 8 C C5 PLP . . . C 3 25.239 24.002 28.515 1 17.78 ? C5 PLP 902 A 1 HETATM 9 C C6 PLP . . . C 3 25.36 25.134 29.273 1 19.04 ? C6 PLP 902 A 1 HETATM 10 C C5A PLP . . . C 3 26.263 23.72 27.454 1 16.94 ? C5A PLP 902 A 1 HETATM 11 O O4P PLP . . . C 3 25.784 24.338 26.22 1 16.94 ? O4P PLP 902 A 1 HETATM 12 P P PLP . . . C 3 26.756 24.711 24.985 1 18.82 ? P PLP 902 A 1 HETATM 13 O O1P PLP . . . C 3 25.859 25.313 23.929 1 18.48 ? O1P PLP 902 A 1 HETATM 14 O O2P PLP . . . C 3 27.752 25.745 25.486 1 17.03 ? O2P PLP 902 A 1 HETATM 15 O O3P PLP . . . C 3 27.415 23.407 24.579 1 17.89 ? O3P PLP 902 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 15 #