data_6S4Q # _model_server_result.job_id Ub6uLutlp4EoFLUVwH4MmA _model_server_result.datetime_utc '2024-12-01 02:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 6S4Q # _exptl.entry_id 6S4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.09 _cell.angle_gamma 90 _cell.entry_id 6S4Q _cell.length_a 184.219 _cell.length_b 57.201 _cell.length_c 57.201 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 311 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 311 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 311 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 311 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.918 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 223 n n C1 C2 GOL sing 224 n n C1 H11 GOL sing 225 n n C1 H12 GOL sing 226 n n O1 HO1 GOL sing 227 n n C2 O2 GOL sing 228 n n C2 C3 GOL sing 229 n n C2 H2 GOL sing 230 n n O2 HO2 GOL sing 231 n n C3 O3 GOL sing 232 n n C3 H31 GOL sing 233 n n C3 H32 GOL sing 234 n n O3 HO3 GOL sing 235 n n # _atom_sites.entry_id 6S4Q _atom_sites.fract_transf_matrix[1][1] 0.005428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001773 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4IR A 1 401 401 4IR 4IR . D 2 4IR A 1 402 402 4IR 4IR . E 3 GOL A 1 403 502 GOL GOL . F 3 GOL A 1 404 601 GOL GOL . G 3 GOL A 1 405 701 GOL GOL . H 2 4IR B 1 401 401 4IR 4IR . I 2 4IR B 1 402 402 4IR 4IR . J 3 GOL B 1 403 501 GOL GOL . K 3 GOL B 1 404 601 GOL GOL . L 4 HOH A 1 501 87 HOH HOH . L 4 HOH A 2 502 58 HOH HOH . L 4 HOH A 3 503 88 HOH HOH . L 4 HOH A 4 504 110 HOH HOH . L 4 HOH A 5 505 124 HOH HOH . L 4 HOH A 6 506 127 HOH HOH . L 4 HOH A 7 507 92 HOH HOH . L 4 HOH A 8 508 128 HOH HOH . L 4 HOH A 9 509 104 HOH HOH . L 4 HOH A 10 510 113 HOH HOH . L 4 HOH A 11 511 54 HOH HOH . L 4 HOH A 12 512 63 HOH HOH . L 4 HOH A 13 513 129 HOH HOH . L 4 HOH A 14 514 90 HOH HOH . L 4 HOH A 15 515 50 HOH HOH . L 4 HOH A 16 516 115 HOH HOH . L 4 HOH A 17 517 52 HOH HOH . L 4 HOH A 18 518 26 HOH HOH . L 4 HOH A 19 519 93 HOH HOH . L 4 HOH A 20 520 14 HOH HOH . L 4 HOH A 21 521 35 HOH HOH . L 4 HOH A 22 522 33 HOH HOH . L 4 HOH A 23 523 13 HOH HOH . L 4 HOH A 24 524 29 HOH HOH . L 4 HOH A 25 525 17 HOH HOH . L 4 HOH A 26 526 59 HOH HOH . L 4 HOH A 27 527 80 HOH HOH . L 4 HOH A 28 528 5 HOH HOH . L 4 HOH A 29 529 45 HOH HOH . L 4 HOH A 30 530 28 HOH HOH . L 4 HOH A 31 531 25 HOH HOH . L 4 HOH A 32 532 1 HOH HOH . L 4 HOH A 33 533 118 HOH HOH . L 4 HOH A 34 534 112 HOH HOH . L 4 HOH A 35 535 20 HOH HOH . L 4 HOH A 36 536 11 HOH HOH . L 4 HOH A 37 537 53 HOH HOH . L 4 HOH A 38 538 74 HOH HOH . L 4 HOH A 39 539 70 HOH HOH . L 4 HOH A 40 540 43 HOH HOH . L 4 HOH A 41 541 94 HOH HOH . L 4 HOH A 42 542 89 HOH HOH . L 4 HOH A 43 543 15 HOH HOH . L 4 HOH A 44 544 116 HOH HOH . L 4 HOH A 45 545 106 HOH HOH . L 4 HOH A 46 546 40 HOH HOH . L 4 HOH A 47 547 69 HOH HOH . L 4 HOH A 48 548 134 HOH HOH . L 4 HOH A 49 549 111 HOH HOH . L 4 HOH A 50 550 46 HOH HOH . L 4 HOH A 51 551 105 HOH HOH . L 4 HOH A 52 552 7 HOH HOH . L 4 HOH A 53 553 132 HOH HOH . L 4 HOH A 54 554 119 HOH HOH . L 4 HOH A 55 555 107 HOH HOH . L 4 HOH A 56 556 42 HOH HOH . L 4 HOH A 57 557 109 HOH HOH . L 4 HOH A 58 558 44 HOH HOH . L 4 HOH A 59 559 123 HOH HOH . L 4 HOH A 60 560 117 HOH HOH . L 4 HOH A 61 561 108 HOH HOH . L 4 HOH A 62 562 83 HOH HOH . M 4 HOH B 1 501 99 HOH HOH . M 4 HOH B 2 502 125 HOH HOH . M 4 HOH B 3 503 97 HOH HOH . M 4 HOH B 4 504 68 HOH HOH . M 4 HOH B 5 505 98 HOH HOH . M 4 HOH B 6 506 27 HOH HOH . M 4 HOH B 7 507 81 HOH HOH . M 4 HOH B 8 508 96 HOH HOH . M 4 HOH B 9 509 51 HOH HOH . M 4 HOH B 10 510 66 HOH HOH . M 4 HOH B 11 511 60 HOH HOH . M 4 HOH B 12 512 102 HOH HOH . M 4 HOH B 13 513 75 HOH HOH . M 4 HOH B 14 514 18 HOH HOH . M 4 HOH B 15 515 103 HOH HOH . M 4 HOH B 16 516 91 HOH HOH . M 4 HOH B 17 517 78 HOH HOH . M 4 HOH B 18 518 49 HOH HOH . M 4 HOH B 19 519 24 HOH HOH . M 4 HOH B 20 520 121 HOH HOH . M 4 HOH B 21 521 55 HOH HOH . M 4 HOH B 22 522 37 HOH HOH . M 4 HOH B 23 523 23 HOH HOH . M 4 HOH B 24 524 38 HOH HOH . M 4 HOH B 25 525 41 HOH HOH . M 4 HOH B 26 526 9 HOH HOH . M 4 HOH B 27 527 4 HOH HOH . M 4 HOH B 28 528 73 HOH HOH . M 4 HOH B 29 529 12 HOH HOH . M 4 HOH B 30 530 95 HOH HOH . M 4 HOH B 31 531 133 HOH HOH . M 4 HOH B 32 532 57 HOH HOH . M 4 HOH B 33 533 61 HOH HOH . M 4 HOH B 34 534 8 HOH HOH . M 4 HOH B 35 535 3 HOH HOH . M 4 HOH B 36 536 65 HOH HOH . M 4 HOH B 37 537 21 HOH HOH . M 4 HOH B 38 538 31 HOH HOH . M 4 HOH B 39 539 39 HOH HOH . M 4 HOH B 40 540 10 HOH HOH . M 4 HOH B 41 541 32 HOH HOH . M 4 HOH B 42 542 34 HOH HOH . M 4 HOH B 43 543 19 HOH HOH . M 4 HOH B 44 544 6 HOH HOH . M 4 HOH B 45 545 64 HOH HOH . M 4 HOH B 46 546 22 HOH HOH . M 4 HOH B 47 547 16 HOH HOH . M 4 HOH B 48 548 2 HOH HOH . M 4 HOH B 49 549 56 HOH HOH . M 4 HOH B 50 550 36 HOH HOH . M 4 HOH B 51 551 100 HOH HOH . M 4 HOH B 52 552 101 HOH HOH . M 4 HOH B 53 553 47 HOH HOH . M 4 HOH B 54 554 122 HOH HOH . M 4 HOH B 55 555 131 HOH HOH . M 4 HOH B 56 556 114 HOH HOH . M 4 HOH B 57 557 71 HOH HOH . M 4 HOH B 58 558 86 HOH HOH . M 4 HOH B 59 559 126 HOH HOH . M 4 HOH B 60 560 135 HOH HOH . M 4 HOH B 61 561 84 HOH HOH . M 4 HOH B 62 562 120 HOH HOH . M 4 HOH B 63 563 48 HOH HOH . M 4 HOH B 64 564 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -40.392 -6.021 -13.711 1 70.9 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . G 3 -39.68 -4.799 -13.523 1 66.24 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . G 3 -41.861 -5.873 -13.368 1 66.49 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . G 3 -41.999 -4.824 -12.417 1 63 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . G 3 -42.755 -5.57 -14.557 1 66.3 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . G 3 -42.954 -6.711 -15.39 1 63.82 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #