data_6S50
#
_model_server_result.job_id            EuU1m7G3dt8jN7NwlcNriA 
_model_server_result.datetime_utc      '2024-12-01 00:01:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":405}' 
#
_entry.id    6S50 
#
_exptl.entry_id    6S50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.33 
_cell.angle_gamma         90 
_cell.entry_id            6S50 
_cell.length_a            183.879 
_cell.length_b            57.771 
_cell.length_c            57.645 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 311 A CYS 311 1_555 B SG CYS 311 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc1 C IR1 4IR . A 4IR 401 1_555 J C24 4IR . B 4IR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 223 n n 
C1 C2 GOL sing 224 n n 
C1 H11 GOL sing 225 n n 
C1 H12 GOL sing 226 n n 
O1 HO1 GOL sing 227 n n 
C2 O2 GOL sing 228 n n 
C2 C3 GOL sing 229 n n 
C2 H2 GOL sing 230 n n 
O2 HO2 GOL sing 231 n n 
C3 O3 GOL sing 232 n n 
C3 H31 GOL sing 233 n n 
C3 H32 GOL sing 234 n n 
O3 HO3 GOL sing 235 n n 
#
_atom_sites.entry_id                     6S50 
_atom_sites.fract_transf_matrix[1][1]    0.005438 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001802 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01731 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4IR A 1 401 385 4IR 4IR . 
D 2 4IR A 1 402 386 4IR 4IR . 
E 3 GOL A 1 403 501 GOL GOL . 
F 3 GOL A 1 404 601 GOL GOL . 
G 3 GOL A 1 405 701 GOL GOL . 
H 4 SO4 A 1 406 2 SO4 SO4 . 
I 2 4IR B 1 401 385 4IR 4IR . 
J 2 4IR B 1 402 386 4IR 4IR . 
K 3 GOL B 1 403 485 GOL GOL . 
L 3 GOL B 1 404 486 GOL GOL . 
M 3 GOL B 1 405 501 GOL GOL . 
N 5 HOH A 1 501 70 HOH HOH . 
N 5 HOH A 2 502 54 HOH HOH . 
N 5 HOH A 3 503 62 HOH HOH . 
N 5 HOH A 4 504 118 HOH HOH . 
N 5 HOH A 5 505 81 HOH HOH . 
N 5 HOH A 6 506 52 HOH HOH . 
N 5 HOH A 7 507 69 HOH HOH . 
N 5 HOH A 8 508 6 HOH HOH . 
N 5 HOH A 9 509 37 HOH HOH . 
N 5 HOH A 10 510 53 HOH HOH . 
N 5 HOH A 11 511 102 HOH HOH . 
N 5 HOH A 12 512 24 HOH HOH . 
N 5 HOH A 13 513 47 HOH HOH . 
N 5 HOH A 14 514 115 HOH HOH . 
N 5 HOH A 15 515 9 HOH HOH . 
N 5 HOH A 16 516 4 HOH HOH . 
N 5 HOH A 17 517 17 HOH HOH . 
N 5 HOH A 18 518 50 HOH HOH . 
N 5 HOH A 19 519 23 HOH HOH . 
N 5 HOH A 20 520 34 HOH HOH . 
N 5 HOH A 21 521 74 HOH HOH . 
N 5 HOH A 22 522 110 HOH HOH . 
N 5 HOH A 23 523 87 HOH HOH . 
N 5 HOH A 24 524 12 HOH HOH . 
N 5 HOH A 25 525 80 HOH HOH . 
N 5 HOH A 26 526 128 HOH HOH . 
N 5 HOH A 27 527 104 HOH HOH . 
N 5 HOH A 28 528 64 HOH HOH . 
N 5 HOH A 29 529 20 HOH HOH . 
N 5 HOH A 30 530 19 HOH HOH . 
N 5 HOH A 31 531 30 HOH HOH . 
N 5 HOH A 32 532 82 HOH HOH . 
N 5 HOH A 33 533 93 HOH HOH . 
N 5 HOH A 34 534 18 HOH HOH . 
N 5 HOH A 35 535 71 HOH HOH . 
N 5 HOH A 36 536 48 HOH HOH . 
N 5 HOH A 37 537 63 HOH HOH . 
N 5 HOH A 38 538 73 HOH HOH . 
N 5 HOH A 39 539 21 HOH HOH . 
N 5 HOH A 40 540 68 HOH HOH . 
N 5 HOH A 41 541 14 HOH HOH . 
N 5 HOH A 42 542 108 HOH HOH . 
N 5 HOH A 43 543 65 HOH HOH . 
N 5 HOH A 44 544 91 HOH HOH . 
N 5 HOH A 45 545 3 HOH HOH . 
N 5 HOH A 46 546 2 HOH HOH . 
N 5 HOH A 47 547 42 HOH HOH . 
N 5 HOH A 48 548 66 HOH HOH . 
N 5 HOH A 49 549 127 HOH HOH . 
N 5 HOH A 50 550 121 HOH HOH . 
N 5 HOH A 51 551 78 HOH HOH . 
N 5 HOH A 52 552 101 HOH HOH . 
N 5 HOH A 53 553 95 HOH HOH . 
N 5 HOH A 54 554 105 HOH HOH . 
N 5 HOH A 55 555 79 HOH HOH . 
N 5 HOH A 56 556 61 HOH HOH . 
N 5 HOH A 57 557 100 HOH HOH . 
N 5 HOH A 58 558 129 HOH HOH . 
N 5 HOH A 59 559 103 HOH HOH . 
N 5 HOH A 60 560 36 HOH HOH . 
N 5 HOH A 61 561 98 HOH HOH . 
N 5 HOH A 62 562 89 HOH HOH . 
N 5 HOH A 63 563 116 HOH HOH . 
N 5 HOH A 64 564 27 HOH HOH . 
N 5 HOH A 65 565 119 HOH HOH . 
N 5 HOH A 66 566 109 HOH HOH . 
N 5 HOH A 67 567 117 HOH HOH . 
O 5 HOH B 1 501 125 HOH HOH . 
O 5 HOH B 2 502 51 HOH HOH . 
O 5 HOH B 3 503 113 HOH HOH . 
O 5 HOH B 4 504 57 HOH HOH . 
O 5 HOH B 5 505 40 HOH HOH . 
O 5 HOH B 6 506 124 HOH HOH . 
O 5 HOH B 7 507 39 HOH HOH . 
O 5 HOH B 8 508 32 HOH HOH . 
O 5 HOH B 9 509 11 HOH HOH . 
O 5 HOH B 10 510 29 HOH HOH . 
O 5 HOH B 11 511 72 HOH HOH . 
O 5 HOH B 12 512 56 HOH HOH . 
O 5 HOH B 13 513 96 HOH HOH . 
O 5 HOH B 14 514 75 HOH HOH . 
O 5 HOH B 15 515 33 HOH HOH . 
O 5 HOH B 16 516 16 HOH HOH . 
O 5 HOH B 17 517 97 HOH HOH . 
O 5 HOH B 18 518 41 HOH HOH . 
O 5 HOH B 19 519 58 HOH HOH . 
O 5 HOH B 20 520 88 HOH HOH . 
O 5 HOH B 21 521 8 HOH HOH . 
O 5 HOH B 22 522 76 HOH HOH . 
O 5 HOH B 23 523 1 HOH HOH . 
O 5 HOH B 24 524 38 HOH HOH . 
O 5 HOH B 25 525 35 HOH HOH . 
O 5 HOH B 26 526 85 HOH HOH . 
O 5 HOH B 27 527 10 HOH HOH . 
O 5 HOH B 28 528 22 HOH HOH . 
O 5 HOH B 29 529 26 HOH HOH . 
O 5 HOH B 30 530 106 HOH HOH . 
O 5 HOH B 31 531 92 HOH HOH . 
O 5 HOH B 32 532 25 HOH HOH . 
O 5 HOH B 33 533 59 HOH HOH . 
O 5 HOH B 34 534 46 HOH HOH . 
O 5 HOH B 35 535 13 HOH HOH . 
O 5 HOH B 36 536 114 HOH HOH . 
O 5 HOH B 37 537 49 HOH HOH . 
O 5 HOH B 38 538 7 HOH HOH . 
O 5 HOH B 39 539 15 HOH HOH . 
O 5 HOH B 40 540 86 HOH HOH . 
O 5 HOH B 41 541 77 HOH HOH . 
O 5 HOH B 42 542 99 HOH HOH . 
O 5 HOH B 43 543 45 HOH HOH . 
O 5 HOH B 44 544 5 HOH HOH . 
O 5 HOH B 45 545 84 HOH HOH . 
O 5 HOH B 46 546 107 HOH HOH . 
O 5 HOH B 47 547 112 HOH HOH . 
O 5 HOH B 48 548 67 HOH HOH . 
O 5 HOH B 49 549 90 HOH HOH . 
O 5 HOH B 50 550 60 HOH HOH . 
O 5 HOH B 51 551 83 HOH HOH . 
O 5 HOH B 52 552 55 HOH HOH . 
O 5 HOH B 53 553 31 HOH HOH . 
O 5 HOH B 54 554 126 HOH HOH . 
O 5 HOH B 55 555 43 HOH HOH . 
O 5 HOH B 56 556 28 HOH HOH . 
O 5 HOH B 57 557 94 HOH HOH . 
O 5 HOH B 58 558 122 HOH HOH . 
O 5 HOH B 59 559 111 HOH HOH . 
O 5 HOH B 60 560 44 HOH HOH . 
O 5 HOH B 61 561 120 HOH HOH . 
O 5 HOH B 62 562 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -6.407 -6.976 -5.107 1 56.38 ? C1 GOL 405 A 1 
HETATM 2 O O1 GOL . . . G 3 -5.172 -7.711 -4.948 1 57.21 ? O1 GOL 405 A 1 
HETATM 3 C C2 GOL . . . G 3 -7.582 -7.99 -5.059 1 53.72 ? C2 GOL 405 A 1 
HETATM 4 O O2 GOL . . . G 3 -7.222 -9.131 -4.338 1 71.68 ? O2 GOL 405 A 1 
HETATM 5 C C3 GOL . . . G 3 -7.881 -8.199 -6.565 1 66.27 ? C3 GOL 405 A 1 
HETATM 6 O O3 GOL . . . G 3 -9.183 -7.698 -6.803 1 62.47 ? O3 GOL 405 A 1 
HETATM 7 H H11 GOL . . . G 3 -6.443 -6.491 -5.946 1 67.68 ? H11 GOL 405 A 1 
HETATM 8 H H12 GOL . . . G 3 -6.534 -6.312 -4.411 1 67.68 ? H12 GOL 405 A 1 
HETATM 9 H HO1 GOL . . . G 3 -5.113 -7.909 -4.123 1 68.67 ? HO1 GOL 405 A 1 
HETATM 10 H H2 GOL . . . G 3 -8.377 -7.675 -4.6 1 64.49 ? H2 GOL 405 A 1 
HETATM 11 H HO2 GOL . . . G 3 -6.396 -9.07 -4.147 1 86.03 ? HO2 GOL 405 A 1 
HETATM 12 H H31 GOL . . . G 3 -7.788 -9.142 -6.775 1 79.55 ? H31 GOL 405 A 1 
HETATM 13 H H32 GOL . . . G 3 -7.196 -7.752 -7.086 1 79.55 ? H32 GOL 405 A 1 
HETATM 14 H HO3 GOL . . . G 3 -9.72 -8.344 -6.676 1 74.98 ? HO3 GOL 405 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#