data_6S56 # _model_server_result.job_id B5PLKUolr_BifGqf8h1MRA _model_server_result.datetime_utc '2025-01-26 14:10:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 6S56 # _exptl.entry_id 6S56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.96 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-[(4~{R})-2',5'-bis(oxidanylidene)spiro[2,3-dihydro-1~{H}-naphthalene-4,4'-imidazolidine]-1'-yl]-~{N}-[4-chloranyl-3-(dimethylsulfamoyl)phenyl]ethanamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6S56 _cell.length_a 79.73 _cell.length_b 79.73 _cell.length_c 134.32 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H23 Cl N4 O5 S' _chem_comp.formula_weight 490.96 _chem_comp.id KVZ _chem_comp.mon_nstd_flag . _chem_comp.name "2-[(4~{R})-2',5'-bis(oxidanylidene)spiro[2,3-dihydro-1~{H}-naphthalene-4,4'-imidazolidine]-1'-yl]-~{N}-[4-chloranyl-3-(dimethylsulfamoyl)phenyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O50 C49 KVZ doub 182 n n C36 C39 KVZ sing 183 n n C36 C33 KVZ sing 184 n n C40 C39 KVZ doub 185 n y C40 C42 KVZ sing 186 n y C30 C33 KVZ sing 187 n n C30 C29 KVZ sing 188 n n C39 C48 KVZ sing 189 n y C49 C29 KVZ sing 190 n n C49 N24 KVZ sing 191 n n C42 C44 KVZ doub 192 n y C48 C29 KVZ sing 193 n n C48 C46 KVZ doub 194 n y C29 N27 KVZ sing 195 n n C21 N24 KVZ sing 196 n n C21 C19 KVZ sing 197 n n C44 C46 KVZ sing 198 n y N24 C25 KVZ sing 199 n n N17 C19 KVZ sing 200 n n N17 C16 KVZ sing 201 n n C19 O20 KVZ doub 202 n n N27 C25 KVZ sing 203 n n C51 C16 KVZ doub 204 n y C51 C53 KVZ sing 205 n y C25 O26 KVZ doub 206 n n C16 C14 KVZ sing 207 n y C53 C55 KVZ doub 208 n y C14 C13 KVZ doub 209 n y C55 C13 KVZ sing 210 n y C55 CL1 KVZ sing 211 n n C01 N05 KVZ sing 212 n n C13 S10 KVZ sing 213 n n O11 S10 KVZ doub 214 n n S10 N05 KVZ sing 215 n n S10 O12 KVZ doub 216 n n N05 C06 KVZ sing 217 n n C21 H1 KVZ sing 218 n n C21 H2 KVZ sing 219 n n C01 H3 KVZ sing 220 n n C01 H4 KVZ sing 221 n n C01 H5 KVZ sing 222 n n C06 H6 KVZ sing 223 n n C06 H7 KVZ sing 224 n n C06 H8 KVZ sing 225 n n C14 H9 KVZ sing 226 n n N17 H10 KVZ sing 227 n n N27 H11 KVZ sing 228 n n C30 H12 KVZ sing 229 n n C30 H13 KVZ sing 230 n n C33 H14 KVZ sing 231 n n C33 H15 KVZ sing 232 n n C36 H16 KVZ sing 233 n n C36 H17 KVZ sing 234 n n C40 H18 KVZ sing 235 n n C42 H19 KVZ sing 236 n n C44 H20 KVZ sing 237 n n C46 H21 KVZ sing 238 n n C51 H22 KVZ sing 239 n n C53 H23 KVZ sing 240 n n # _atom_sites.entry_id 6S56 _atom_sites.fract_transf_matrix[1][1] 0.012542 _atom_sites.fract_transf_matrix[1][2] 0.007241 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1201 2 EDO EDO . C 2 EDO A 1 1202 3 EDO EDO . D 3 SO4 A 1 1203 1 SO4 SO4 . E 3 SO4 A 1 1204 2 SO4 SO4 . F 4 KVZ A 1 1205 1 KVZ LIG . G 5 HOH A 1 1301 174 HOH HOH . G 5 HOH A 2 1302 54 HOH HOH . G 5 HOH A 3 1303 87 HOH HOH . G 5 HOH A 4 1304 171 HOH HOH . G 5 HOH A 5 1305 173 HOH HOH . G 5 HOH A 6 1306 86 HOH HOH . G 5 HOH A 7 1307 114 HOH HOH . G 5 HOH A 8 1308 67 HOH HOH . G 5 HOH A 9 1309 190 HOH HOH . G 5 HOH A 10 1310 195 HOH HOH . G 5 HOH A 11 1311 142 HOH HOH . G 5 HOH A 12 1312 27 HOH HOH . G 5 HOH A 13 1313 48 HOH HOH . G 5 HOH A 14 1314 4 HOH HOH . G 5 HOH A 15 1315 47 HOH HOH . G 5 HOH A 16 1316 5 HOH HOH . G 5 HOH A 17 1317 110 HOH HOH . G 5 HOH A 18 1318 32 HOH HOH . G 5 HOH A 19 1319 129 HOH HOH . G 5 HOH A 20 1320 165 HOH HOH . G 5 HOH A 21 1321 26 HOH HOH . G 5 HOH A 22 1322 3 HOH HOH . G 5 HOH A 23 1323 38 HOH HOH . G 5 HOH A 24 1324 166 HOH HOH . G 5 HOH A 25 1325 51 HOH HOH . G 5 HOH A 26 1326 84 HOH HOH . G 5 HOH A 27 1327 58 HOH HOH . G 5 HOH A 28 1328 2 HOH HOH . G 5 HOH A 29 1329 115 HOH HOH . G 5 HOH A 30 1330 130 HOH HOH . G 5 HOH A 31 1331 121 HOH HOH . G 5 HOH A 32 1332 50 HOH HOH . G 5 HOH A 33 1333 55 HOH HOH . G 5 HOH A 34 1334 143 HOH HOH . G 5 HOH A 35 1335 103 HOH HOH . G 5 HOH A 36 1336 21 HOH HOH . G 5 HOH A 37 1337 102 HOH HOH . G 5 HOH A 38 1338 36 HOH HOH . G 5 HOH A 39 1339 11 HOH HOH . G 5 HOH A 40 1340 107 HOH HOH . G 5 HOH A 41 1341 20 HOH HOH . G 5 HOH A 42 1342 178 HOH HOH . G 5 HOH A 43 1343 65 HOH HOH . G 5 HOH A 44 1344 59 HOH HOH . G 5 HOH A 45 1345 77 HOH HOH . G 5 HOH A 46 1346 14 HOH HOH . G 5 HOH A 47 1347 56 HOH HOH . G 5 HOH A 48 1348 82 HOH HOH . G 5 HOH A 49 1349 134 HOH HOH . G 5 HOH A 50 1350 9 HOH HOH . G 5 HOH A 51 1351 40 HOH HOH . G 5 HOH A 52 1352 139 HOH HOH . G 5 HOH A 53 1353 19 HOH HOH . G 5 HOH A 54 1354 69 HOH HOH . G 5 HOH A 55 1355 42 HOH HOH . G 5 HOH A 56 1356 52 HOH HOH . G 5 HOH A 57 1357 68 HOH HOH . G 5 HOH A 58 1358 194 HOH HOH . G 5 HOH A 59 1359 62 HOH HOH . G 5 HOH A 60 1360 100 HOH HOH . G 5 HOH A 61 1361 119 HOH HOH . G 5 HOH A 62 1362 182 HOH HOH . G 5 HOH A 63 1363 1 HOH HOH . G 5 HOH A 64 1364 122 HOH HOH . G 5 HOH A 65 1365 97 HOH HOH . G 5 HOH A 66 1366 10 HOH HOH . G 5 HOH A 67 1367 91 HOH HOH . G 5 HOH A 68 1368 92 HOH HOH . G 5 HOH A 69 1369 106 HOH HOH . G 5 HOH A 70 1370 57 HOH HOH . G 5 HOH A 71 1371 99 HOH HOH . G 5 HOH A 72 1372 8 HOH HOH . G 5 HOH A 73 1373 76 HOH HOH . G 5 HOH A 74 1374 23 HOH HOH . G 5 HOH A 75 1375 179 HOH HOH . G 5 HOH A 76 1376 105 HOH HOH . G 5 HOH A 77 1377 98 HOH HOH . G 5 HOH A 78 1378 17 HOH HOH . G 5 HOH A 79 1379 29 HOH HOH . G 5 HOH A 80 1380 43 HOH HOH . G 5 HOH A 81 1381 30 HOH HOH . G 5 HOH A 82 1382 28 HOH HOH . G 5 HOH A 83 1383 149 HOH HOH . G 5 HOH A 84 1384 162 HOH HOH . G 5 HOH A 85 1385 101 HOH HOH . G 5 HOH A 86 1386 117 HOH HOH . G 5 HOH A 87 1387 138 HOH HOH . G 5 HOH A 88 1388 64 HOH HOH . G 5 HOH A 89 1389 79 HOH HOH . G 5 HOH A 90 1390 183 HOH HOH . G 5 HOH A 91 1391 18 HOH HOH . G 5 HOH A 92 1392 41 HOH HOH . G 5 HOH A 93 1393 13 HOH HOH . G 5 HOH A 94 1394 155 HOH HOH . G 5 HOH A 95 1395 148 HOH HOH . G 5 HOH A 96 1396 25 HOH HOH . G 5 HOH A 97 1397 136 HOH HOH . G 5 HOH A 98 1398 156 HOH HOH . G 5 HOH A 99 1399 6 HOH HOH . G 5 HOH A 100 1400 75 HOH HOH . G 5 HOH A 101 1401 150 HOH HOH . G 5 HOH A 102 1402 15 HOH HOH . G 5 HOH A 103 1403 22 HOH HOH . G 5 HOH A 104 1404 74 HOH HOH . G 5 HOH A 105 1405 164 HOH HOH . G 5 HOH A 106 1406 177 HOH HOH . G 5 HOH A 107 1407 73 HOH HOH . G 5 HOH A 108 1408 120 HOH HOH . G 5 HOH A 109 1409 63 HOH HOH . G 5 HOH A 110 1410 60 HOH HOH . G 5 HOH A 111 1411 108 HOH HOH . G 5 HOH A 112 1412 71 HOH HOH . G 5 HOH A 113 1413 12 HOH HOH . G 5 HOH A 114 1414 37 HOH HOH . G 5 HOH A 115 1415 167 HOH HOH . G 5 HOH A 116 1416 109 HOH HOH . G 5 HOH A 117 1417 81 HOH HOH . G 5 HOH A 118 1418 188 HOH HOH . G 5 HOH A 119 1419 118 HOH HOH . G 5 HOH A 120 1420 39 HOH HOH . G 5 HOH A 121 1421 147 HOH HOH . G 5 HOH A 122 1422 66 HOH HOH . G 5 HOH A 123 1423 72 HOH HOH . G 5 HOH A 124 1424 35 HOH HOH . G 5 HOH A 125 1425 154 HOH HOH . G 5 HOH A 126 1426 127 HOH HOH . G 5 HOH A 127 1427 137 HOH HOH . G 5 HOH A 128 1428 160 HOH HOH . G 5 HOH A 129 1429 123 HOH HOH . G 5 HOH A 130 1430 80 HOH HOH . G 5 HOH A 131 1431 161 HOH HOH . G 5 HOH A 132 1432 151 HOH HOH . G 5 HOH A 133 1433 93 HOH HOH . G 5 HOH A 134 1434 16 HOH HOH . G 5 HOH A 135 1435 128 HOH HOH . G 5 HOH A 136 1436 78 HOH HOH . G 5 HOH A 137 1437 44 HOH HOH . G 5 HOH A 138 1438 7 HOH HOH . G 5 HOH A 139 1439 85 HOH HOH . G 5 HOH A 140 1440 180 HOH HOH . G 5 HOH A 141 1441 53 HOH HOH . G 5 HOH A 142 1442 159 HOH HOH . G 5 HOH A 143 1443 172 HOH HOH . G 5 HOH A 144 1444 176 HOH HOH . G 5 HOH A 145 1445 33 HOH HOH . G 5 HOH A 146 1446 163 HOH HOH . G 5 HOH A 147 1447 70 HOH HOH . G 5 HOH A 148 1448 95 HOH HOH . G 5 HOH A 149 1449 132 HOH HOH . G 5 HOH A 150 1450 191 HOH HOH . G 5 HOH A 151 1451 141 HOH HOH . G 5 HOH A 152 1452 31 HOH HOH . G 5 HOH A 153 1453 175 HOH HOH . G 5 HOH A 154 1454 193 HOH HOH . G 5 HOH A 155 1455 90 HOH HOH . G 5 HOH A 156 1456 186 HOH HOH . G 5 HOH A 157 1457 131 HOH HOH . G 5 HOH A 158 1458 112 HOH HOH . G 5 HOH A 159 1459 104 HOH HOH . G 5 HOH A 160 1460 94 HOH HOH . G 5 HOH A 161 1461 184 HOH HOH . G 5 HOH A 162 1462 133 HOH HOH . G 5 HOH A 163 1463 83 HOH HOH . G 5 HOH A 164 1464 34 HOH HOH . G 5 HOH A 165 1465 116 HOH HOH . G 5 HOH A 166 1466 45 HOH HOH . G 5 HOH A 167 1467 189 HOH HOH . G 5 HOH A 168 1468 169 HOH HOH . G 5 HOH A 169 1469 126 HOH HOH . G 5 HOH A 170 1470 144 HOH HOH . G 5 HOH A 171 1471 49 HOH HOH . G 5 HOH A 172 1472 125 HOH HOH . G 5 HOH A 173 1473 61 HOH HOH . G 5 HOH A 174 1474 96 HOH HOH . G 5 HOH A 175 1475 89 HOH HOH . G 5 HOH A 176 1476 152 HOH HOH . G 5 HOH A 177 1477 46 HOH HOH . G 5 HOH A 178 1478 187 HOH HOH . G 5 HOH A 179 1479 181 HOH HOH . G 5 HOH A 180 1480 153 HOH HOH . G 5 HOH A 181 1481 170 HOH HOH . G 5 HOH A 182 1482 192 HOH HOH . G 5 HOH A 183 1483 146 HOH HOH . G 5 HOH A 184 1484 111 HOH HOH . G 5 HOH A 185 1485 88 HOH HOH . G 5 HOH A 186 1486 135 HOH HOH . G 5 HOH A 187 1487 113 HOH HOH . G 5 HOH A 188 1488 24 HOH HOH . G 5 HOH A 189 1489 185 HOH HOH . G 5 HOH A 190 1490 124 HOH HOH . G 5 HOH A 191 1491 140 HOH HOH . G 5 HOH A 192 1492 158 HOH HOH . G 5 HOH A 193 1493 168 HOH HOH . G 5 HOH A 194 1494 145 HOH HOH . G 5 HOH A 195 1495 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 KVZ . . . F 4 -23.381 44.719 9.796 1 48.08 ? C13 KVZ 1205 A 1 HETATM 2 C C21 KVZ . . . F 4 -25.153 49.817 7.198 1 103.4 ? C21 KVZ 1205 A 1 HETATM 3 C C01 KVZ . . . F 4 -26.728 44.155 9.569 1 60.08 ? C01 KVZ 1205 A 1 HETATM 4 N N05 KVZ . . . F 4 -25.898 44.213 10.781 1 65.95 ? N05 KVZ 1205 A 1 HETATM 5 C C06 KVZ . . . F 4 -26.264 45.228 11.78 1 66.12 ? C06 KVZ 1205 A 1 HETATM 6 S S10 KVZ . . . F 4 -24.393 43.6 10.755 1 68.48 ? S10 KVZ 1205 A 1 HETATM 7 O O11 KVZ . . . F 4 -24.455 42.37 10.03 1 61.73 ? O11 KVZ 1205 A 1 HETATM 8 O O12 KVZ . . . F 4 -23.925 43.597 12.11 1 75.63 ? O12 KVZ 1205 A 1 HETATM 9 C C14 KVZ . . . F 4 -23.984 45.88 9.309 1 52.51 ? C14 KVZ 1205 A 1 HETATM 10 C C16 KVZ . . . F 4 -23.252 46.802 8.561 1 50.98 ? C16 KVZ 1205 A 1 HETATM 11 N N17 KVZ . . . F 4 -23.763 47.995 7.982 1 62.91 ? N17 KVZ 1205 A 1 HETATM 12 C C19 KVZ . . . F 4 -25.006 48.545 8.037 1 75.91 ? C19 KVZ 1205 A 1 HETATM 13 O O20 KVZ . . . F 4 -25.941 48.069 8.672 1 71.66 ? O20 KVZ 1205 A 1 HETATM 14 N N24 KVZ . . . F 4 -26.195 50.834 7.357 1 147.09 ? N24 KVZ 1205 A 1 HETATM 15 C C25 KVZ . . . F 4 -26.409 51.582 8.506 1 158.31 ? C25 KVZ 1205 A 1 HETATM 16 O O26 KVZ . . . F 4 -25.83 51.445 9.569 1 150.79 ? O26 KVZ 1205 A 1 HETATM 17 N N27 KVZ . . . F 4 -27.406 52.462 8.234 1 169.15 ? N27 KVZ 1205 A 1 HETATM 18 C C29 KVZ . . . F 4 -27.886 52.418 6.851 1 173.14 ? C29 KVZ 1205 A 1 HETATM 19 C C30 KVZ . . . F 4 -27.518 53.71 6.088 1 175.76 ? C30 KVZ 1205 A 1 HETATM 20 C C33 KVZ . . . F 4 -28.603 54.773 6.102 1 170.21 ? C33 KVZ 1205 A 1 HETATM 21 C C36 KVZ . . . F 4 -29.83 54.221 5.419 1 163.28 ? C36 KVZ 1205 A 1 HETATM 22 C C39 KVZ . . . F 4 -30.283 52.955 6.089 1 158.76 ? C39 KVZ 1205 A 1 HETATM 23 C C40 KVZ . . . F 4 -31.634 52.616 6.052 1 145.51 ? C40 KVZ 1205 A 1 HETATM 24 C C42 KVZ . . . F 4 -32.096 51.464 6.659 1 141.26 ? C42 KVZ 1205 A 1 HETATM 25 C C44 KVZ . . . F 4 -31.219 50.635 7.315 1 141.93 ? C44 KVZ 1205 A 1 HETATM 26 C C46 KVZ . . . F 4 -29.87 50.951 7.368 1 151.31 ? C46 KVZ 1205 A 1 HETATM 27 C C48 KVZ . . . F 4 -29.381 52.102 6.751 1 162.59 ? C48 KVZ 1205 A 1 HETATM 28 C C49 KVZ . . . F 4 -27.018 51.245 6.33 1 173.5 ? C49 KVZ 1205 A 1 HETATM 29 O O50 KVZ . . . F 4 -27.01 50.803 5.195 1 187.15 ? O50 KVZ 1205 A 1 HETATM 30 C C51 KVZ . . . F 4 -21.92 46.542 8.263 1 52.72 ? C51 KVZ 1205 A 1 HETATM 31 C C53 KVZ . . . F 4 -21.308 45.399 8.736 1 48.62 ? C53 KVZ 1205 A 1 HETATM 32 C C55 KVZ . . . F 4 -22.021 44.488 9.496 1 49.18 ? C55 KVZ 1205 A 1 HETATM 33 CL CL1 KVZ . . . F 4 -21.187 43.058 10.032 1 54.13 ? CL1 KVZ 1205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #