data_6S57 # _model_server_result.job_id 0yD2Ft53Rb9W1q1hc3zYsg _model_server_result.datetime_utc '2024-11-16 05:02:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 6S57 # _exptl.entry_id 6S57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.525 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3-(azepan-1-ylsulfonyl)-4-methyl-phenyl]-2-[4,4-dimethyl-2,5-bis(oxidanylidene)imidazolidin-1-yl]ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6S57 _cell.length_a 79.69 _cell.length_b 79.69 _cell.length_c 137.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N4 O5 S' _chem_comp.formula_weight 436.525 _chem_comp.id KVT _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3-(azepan-1-ylsulfonyl)-4-methyl-phenyl]-2-[4,4-dimethyl-2,5-bis(oxidanylidene)imidazolidin-1-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O33 C32 KVT doub 182 n n C28 C23 KVT sing 183 n n C32 C23 KVT sing 184 n n C32 N18 KVT sing 185 n n C23 C24 KVT sing 186 n n C23 N21 KVT sing 187 n n C15 N18 KVT sing 188 n n C15 C13 KVT sing 189 n n N18 C19 KVT sing 190 n n N11 C13 KVT sing 191 n n N11 C10 KVT sing 192 n n C13 O14 KVT doub 193 n n C08 C10 KVT doub 194 n y C08 C06 KVT sing 195 n y N21 C19 KVT sing 196 n n C10 C34 KVT sing 197 n y C06 C05 KVT doub 198 n y C19 O20 KVT doub 199 n n C34 C36 KVT doub 200 n y C05 C36 KVT sing 201 n y C05 C01 KVT sing 202 n n C36 S37 KVT sing 203 n n O39 S37 KVT doub 204 n n C56 C53 KVT sing 205 n n C56 N40 KVT sing 206 n n C53 C50 KVT sing 207 n n S37 N40 KVT sing 208 n n S37 O38 KVT doub 209 n n N40 C41 KVT sing 210 n n C50 C47 KVT sing 211 n n C41 C44 KVT sing 212 n n C44 C47 KVT sing 213 n n C15 H1 KVT sing 214 n n C15 H2 KVT sing 215 n n C24 H3 KVT sing 216 n n C24 H4 KVT sing 217 n n C24 H5 KVT sing 218 n n C28 H6 KVT sing 219 n n C28 H7 KVT sing 220 n n C28 H8 KVT sing 221 n n C01 H9 KVT sing 222 n n C01 H10 KVT sing 223 n n C01 H11 KVT sing 224 n n C06 H12 KVT sing 225 n n C08 H13 KVT sing 226 n n N11 H14 KVT sing 227 n n N21 H15 KVT sing 228 n n C34 H16 KVT sing 229 n n C41 H17 KVT sing 230 n n C41 H18 KVT sing 231 n n C44 H19 KVT sing 232 n n C44 H20 KVT sing 233 n n C47 H21 KVT sing 234 n n C47 H22 KVT sing 235 n n C50 H23 KVT sing 236 n n C50 H24 KVT sing 237 n n C53 H25 KVT sing 238 n n C53 H26 KVT sing 239 n n C56 H27 KVT sing 240 n n C56 H28 KVT sing 241 n n # _atom_sites.entry_id 6S57 _atom_sites.fract_transf_matrix[1][1] 0.012549 _atom_sites.fract_transf_matrix[1][2] 0.007245 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1201 3 EDO EDO . C 3 KVT A 1 1202 1 KVT LIG . D 4 SO4 A 1 1203 1 SO4 SO4 . E 4 SO4 A 1 1204 4 SO4 SO4 . F 5 HOH A 1 1301 162 HOH HOH . F 5 HOH A 2 1302 109 HOH HOH . F 5 HOH A 3 1303 22 HOH HOH . F 5 HOH A 4 1304 120 HOH HOH . F 5 HOH A 5 1305 180 HOH HOH . F 5 HOH A 6 1306 131 HOH HOH . F 5 HOH A 7 1307 11 HOH HOH . F 5 HOH A 8 1308 182 HOH HOH . F 5 HOH A 9 1309 170 HOH HOH . F 5 HOH A 10 1310 82 HOH HOH . F 5 HOH A 11 1311 115 HOH HOH . F 5 HOH A 12 1312 133 HOH HOH . F 5 HOH A 13 1313 66 HOH HOH . F 5 HOH A 14 1314 90 HOH HOH . F 5 HOH A 15 1315 9 HOH HOH . F 5 HOH A 16 1316 83 HOH HOH . F 5 HOH A 17 1317 54 HOH HOH . F 5 HOH A 18 1318 47 HOH HOH . F 5 HOH A 19 1319 48 HOH HOH . F 5 HOH A 20 1320 144 HOH HOH . F 5 HOH A 21 1321 87 HOH HOH . F 5 HOH A 22 1322 55 HOH HOH . F 5 HOH A 23 1323 36 HOH HOH . F 5 HOH A 24 1324 60 HOH HOH . F 5 HOH A 25 1325 85 HOH HOH . F 5 HOH A 26 1326 32 HOH HOH . F 5 HOH A 27 1327 17 HOH HOH . F 5 HOH A 28 1328 97 HOH HOH . F 5 HOH A 29 1329 173 HOH HOH . F 5 HOH A 30 1330 28 HOH HOH . F 5 HOH A 31 1331 5 HOH HOH . F 5 HOH A 32 1332 111 HOH HOH . F 5 HOH A 33 1333 128 HOH HOH . F 5 HOH A 34 1334 73 HOH HOH . F 5 HOH A 35 1335 61 HOH HOH . F 5 HOH A 36 1336 102 HOH HOH . F 5 HOH A 37 1337 86 HOH HOH . F 5 HOH A 38 1338 75 HOH HOH . F 5 HOH A 39 1339 34 HOH HOH . F 5 HOH A 40 1340 38 HOH HOH . F 5 HOH A 41 1341 108 HOH HOH . F 5 HOH A 42 1342 46 HOH HOH . F 5 HOH A 43 1343 130 HOH HOH . F 5 HOH A 44 1344 20 HOH HOH . F 5 HOH A 45 1345 112 HOH HOH . F 5 HOH A 46 1346 99 HOH HOH . F 5 HOH A 47 1347 4 HOH HOH . F 5 HOH A 48 1348 3 HOH HOH . F 5 HOH A 49 1349 19 HOH HOH . F 5 HOH A 50 1350 6 HOH HOH . F 5 HOH A 51 1351 98 HOH HOH . F 5 HOH A 52 1352 181 HOH HOH . F 5 HOH A 53 1353 8 HOH HOH . F 5 HOH A 54 1354 16 HOH HOH . F 5 HOH A 55 1355 2 HOH HOH . F 5 HOH A 56 1356 95 HOH HOH . F 5 HOH A 57 1357 152 HOH HOH . F 5 HOH A 58 1358 37 HOH HOH . F 5 HOH A 59 1359 56 HOH HOH . F 5 HOH A 60 1360 160 HOH HOH . F 5 HOH A 61 1361 169 HOH HOH . F 5 HOH A 62 1362 141 HOH HOH . F 5 HOH A 63 1363 122 HOH HOH . F 5 HOH A 64 1364 58 HOH HOH . F 5 HOH A 65 1365 163 HOH HOH . F 5 HOH A 66 1366 65 HOH HOH . F 5 HOH A 67 1367 150 HOH HOH . F 5 HOH A 68 1368 52 HOH HOH . F 5 HOH A 69 1369 18 HOH HOH . F 5 HOH A 70 1370 124 HOH HOH . F 5 HOH A 71 1371 43 HOH HOH . F 5 HOH A 72 1372 148 HOH HOH . F 5 HOH A 73 1373 7 HOH HOH . F 5 HOH A 74 1374 21 HOH HOH . F 5 HOH A 75 1375 67 HOH HOH . F 5 HOH A 76 1376 69 HOH HOH . F 5 HOH A 77 1377 156 HOH HOH . F 5 HOH A 78 1378 153 HOH HOH . F 5 HOH A 79 1379 151 HOH HOH . F 5 HOH A 80 1380 51 HOH HOH . F 5 HOH A 81 1381 93 HOH HOH . F 5 HOH A 82 1382 35 HOH HOH . F 5 HOH A 83 1383 64 HOH HOH . F 5 HOH A 84 1384 105 HOH HOH . F 5 HOH A 85 1385 12 HOH HOH . F 5 HOH A 86 1386 179 HOH HOH . F 5 HOH A 87 1387 25 HOH HOH . F 5 HOH A 88 1388 165 HOH HOH . F 5 HOH A 89 1389 10 HOH HOH . F 5 HOH A 90 1390 62 HOH HOH . F 5 HOH A 91 1391 114 HOH HOH . F 5 HOH A 92 1392 26 HOH HOH . F 5 HOH A 93 1393 154 HOH HOH . F 5 HOH A 94 1394 27 HOH HOH . F 5 HOH A 95 1395 14 HOH HOH . F 5 HOH A 96 1396 96 HOH HOH . F 5 HOH A 97 1397 39 HOH HOH . F 5 HOH A 98 1398 177 HOH HOH . F 5 HOH A 99 1399 126 HOH HOH . F 5 HOH A 100 1400 23 HOH HOH . F 5 HOH A 101 1401 175 HOH HOH . F 5 HOH A 102 1402 15 HOH HOH . F 5 HOH A 103 1403 178 HOH HOH . F 5 HOH A 104 1404 1 HOH HOH . F 5 HOH A 105 1405 71 HOH HOH . F 5 HOH A 106 1406 149 HOH HOH . F 5 HOH A 107 1407 24 HOH HOH . F 5 HOH A 108 1408 142 HOH HOH . F 5 HOH A 109 1409 137 HOH HOH . F 5 HOH A 110 1410 104 HOH HOH . F 5 HOH A 111 1411 68 HOH HOH . F 5 HOH A 112 1412 127 HOH HOH . F 5 HOH A 113 1413 101 HOH HOH . F 5 HOH A 114 1414 143 HOH HOH . F 5 HOH A 115 1415 74 HOH HOH . F 5 HOH A 116 1416 164 HOH HOH . F 5 HOH A 117 1417 88 HOH HOH . F 5 HOH A 118 1418 183 HOH HOH . F 5 HOH A 119 1419 70 HOH HOH . F 5 HOH A 120 1420 100 HOH HOH . F 5 HOH A 121 1421 78 HOH HOH . F 5 HOH A 122 1422 89 HOH HOH . F 5 HOH A 123 1423 135 HOH HOH . F 5 HOH A 124 1424 168 HOH HOH . F 5 HOH A 125 1425 72 HOH HOH . F 5 HOH A 126 1426 125 HOH HOH . F 5 HOH A 127 1427 138 HOH HOH . F 5 HOH A 128 1428 123 HOH HOH . F 5 HOH A 129 1429 79 HOH HOH . F 5 HOH A 130 1430 81 HOH HOH . F 5 HOH A 131 1431 57 HOH HOH . F 5 HOH A 132 1432 172 HOH HOH . F 5 HOH A 133 1433 147 HOH HOH . F 5 HOH A 134 1434 106 HOH HOH . F 5 HOH A 135 1435 31 HOH HOH . F 5 HOH A 136 1436 13 HOH HOH . F 5 HOH A 137 1437 53 HOH HOH . F 5 HOH A 138 1438 29 HOH HOH . F 5 HOH A 139 1439 33 HOH HOH . F 5 HOH A 140 1440 94 HOH HOH . F 5 HOH A 141 1441 50 HOH HOH . F 5 HOH A 142 1442 92 HOH HOH . F 5 HOH A 143 1443 77 HOH HOH . F 5 HOH A 144 1444 166 HOH HOH . F 5 HOH A 145 1445 84 HOH HOH . F 5 HOH A 146 1446 116 HOH HOH . F 5 HOH A 147 1447 40 HOH HOH . F 5 HOH A 148 1448 63 HOH HOH . F 5 HOH A 149 1449 76 HOH HOH . F 5 HOH A 150 1450 44 HOH HOH . F 5 HOH A 151 1451 176 HOH HOH . F 5 HOH A 152 1452 145 HOH HOH . F 5 HOH A 153 1453 49 HOH HOH . F 5 HOH A 154 1454 119 HOH HOH . F 5 HOH A 155 1455 113 HOH HOH . F 5 HOH A 156 1456 159 HOH HOH . F 5 HOH A 157 1457 107 HOH HOH . F 5 HOH A 158 1458 132 HOH HOH . F 5 HOH A 159 1459 42 HOH HOH . F 5 HOH A 160 1460 45 HOH HOH . F 5 HOH A 161 1461 129 HOH HOH . F 5 HOH A 162 1462 171 HOH HOH . F 5 HOH A 163 1463 91 HOH HOH . F 5 HOH A 164 1464 80 HOH HOH . F 5 HOH A 165 1465 140 HOH HOH . F 5 HOH A 166 1466 139 HOH HOH . F 5 HOH A 167 1467 121 HOH HOH . F 5 HOH A 168 1468 161 HOH HOH . F 5 HOH A 169 1469 167 HOH HOH . F 5 HOH A 170 1470 118 HOH HOH . F 5 HOH A 171 1471 41 HOH HOH . F 5 HOH A 172 1472 110 HOH HOH . F 5 HOH A 173 1473 59 HOH HOH . F 5 HOH A 174 1474 136 HOH HOH . F 5 HOH A 175 1475 30 HOH HOH . F 5 HOH A 176 1476 157 HOH HOH . F 5 HOH A 177 1477 134 HOH HOH . F 5 HOH A 178 1478 158 HOH HOH . F 5 HOH A 179 1479 103 HOH HOH . F 5 HOH A 180 1480 146 HOH HOH . F 5 HOH A 181 1481 174 HOH HOH . F 5 HOH A 182 1482 117 HOH HOH . F 5 HOH A 183 1483 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KVT . A . C 3 -22.714 46.885 8.441 0.7 44.92 ? C10 KVT 1202 A 1 HETATM 2 C C13 KVT . A . C 3 -24.545 48.53 8.004 0.7 57.98 ? C13 KVT 1202 A 1 HETATM 3 C C15 KVT . A . C 3 -24.781 49.881 7.352 0.7 69.09 ? C15 KVT 1202 A 1 HETATM 4 C C24 KVT . A . C 3 -29.498 49.757 7.479 0.7 86.32 ? C24 KVT 1202 A 1 HETATM 5 C C28 KVT . A . C 3 -28.916 51.85 6.172 0.7 83.05 ? C28 KVT 1202 A 1 HETATM 6 C C01 KVT . A . C 3 -20.816 43.24 9.822 0.7 41.32 ? C01 KVT 1202 A 1 HETATM 7 C C05 KVT . A . C 3 -21.511 44.496 9.366 0.7 42.04 ? C05 KVT 1202 A 1 HETATM 8 C C06 KVT . A . C 3 -20.823 45.409 8.568 0.7 41.04 ? C06 KVT 1202 A 1 HETATM 9 C C08 KVT . A . C 3 -21.402 46.578 8.108 0.7 44.15 ? C08 KVT 1202 A 1 HETATM 10 N N11 KVT . A . C 3 -23.264 48.094 7.942 0.7 49.87 ? N11 KVT 1202 A 1 HETATM 11 O O14 KVT . A . C 3 -25.463 47.917 8.541 0.7 59.19 ? O14 KVT 1202 A 1 HETATM 12 N N18 KVT . A . C 3 -26.142 50.368 7.512 0.7 81.38 ? N18 KVT 1202 A 1 HETATM 13 C C19 KVT . A . C 3 -26.578 51.153 8.574 0.7 84.59 ? C19 KVT 1202 A 1 HETATM 14 O O20 KVT . A . C 3 -25.888 51.536 9.51 0.7 76.03 ? O20 KVT 1202 A 1 HETATM 15 N N21 KVT . A . C 3 -27.895 51.406 8.378 0.7 87.83 ? N21 KVT 1202 A 1 HETATM 16 C C23 KVT . A . C 3 -28.415 50.789 7.155 0.7 87.3 ? C23 KVT 1202 A 1 HETATM 17 C C32 KVT . A . C 3 -27.162 50.106 6.625 0.7 88.74 ? C32 KVT 1202 A 1 HETATM 18 O O33 KVT . A . C 3 -27.063 49.444 5.608 0.7 90.22 ? O33 KVT 1202 A 1 HETATM 19 C C34 KVT . A . C 3 -23.432 45.991 9.228 0.7 44.8 ? C34 KVT 1202 A 1 HETATM 20 C C36 KVT . A . C 3 -22.842 44.82 9.687 0.7 45.33 ? C36 KVT 1202 A 1 HETATM 21 S S37 KVT . A . C 3 -23.837 43.745 10.692 0.7 50.71 ? S37 KVT 1202 A 1 HETATM 22 O O38 KVT . A . C 3 -23.134 43.522 11.916 0.7 51.43 ? O38 KVT 1202 A 1 HETATM 23 O O39 KVT . A . C 3 -24.214 42.632 9.881 0.7 49.24 ? O39 KVT 1202 A 1 HETATM 24 N N40 KVT . A . C 3 -25.214 44.532 11.081 0.7 50.2 ? N40 KVT 1202 A 1 HETATM 25 C C41 KVT . A . C 3 -25.164 45.518 12.18 0.7 52.57 ? C41 KVT 1202 A 1 HETATM 26 C C44 KVT . A . C 3 -26.442 46.303 12.407 0.7 52.97 ? C44 KVT 1202 A 1 HETATM 27 C C47 KVT . A . C 3 -27.668 45.461 12.69 0.7 55.37 ? C47 KVT 1202 A 1 HETATM 28 C C50 KVT . A . C 3 -28.403 44.976 11.469 0.7 57.12 ? C50 KVT 1202 A 1 HETATM 29 C C53 KVT . A . C 3 -27.599 44.099 10.534 0.7 56.88 ? C53 KVT 1202 A 1 HETATM 30 C C56 KVT . A . C 3 -26.28 44.658 10.067 0.7 52.26 ? C56 KVT 1202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #