data_6S5E
#
_model_server_result.job_id            gtJHxG6r1aiJEXBIyS7igA 
_model_server_result.datetime_utc      '2024-11-08 15:41:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s5e 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":601}' 
#
_entry.id    6S5E 
#
_exptl.entry_id    6S5E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6S5E 
_cell.length_a            85.695 
_cell.length_b            133.873 
_cell.length_c            205.07 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S5E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
G,H,O,P 1 2 
C,D,K,L 1 3 
E,F,M,N 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -85.695 0 0 
3 'crystal symmetry operation' 2_555 -x+1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 42.8475 0 102.535 
4 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 -42.8475 -66.9365 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6S5E 
_atom_sites.fract_transf_matrix[1][1]    0.011669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00747 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004876 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 2 ATP B 1 601 601 ATP ATP . 
K 2 ATP C 1 601 601 ATP ATP . 
L 2 ATP D 1 601 601 ATP ATP . 
M 2 ATP E 1 601 601 ATP ATP . 
N 2 ATP F 1 601 601 ATP ATP . 
O 2 ATP G 1 601 601 ATP ATP . 
P 2 ATP H 1 601 601 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 2 64.44 -5.569 1.808 1 178.37 ? PG ATP 601 H 1 
HETATM 2 O O1G ATP . . . P 2 64.169 -6.114 3.191 1 175.83 ? O1G ATP 601 H 1 
HETATM 3 O O2G ATP . . . P 2 64.091 -4.111 1.626 1 174.22 -1 O2G ATP 601 H 1 
HETATM 4 O O3G ATP . . . P 2 63.954 -6.471 0.7 1 176.85 ? O3G ATP 601 H 1 
HETATM 5 P PB ATP . . . P 2 66.857 -6.21 0.442 1 176.17 ? PB ATP 601 H 1 
HETATM 6 O O1B ATP . . . P 2 65.969 -7.05 -0.442 1 189.8 -1 O1B ATP 601 H 1 
HETATM 7 O O2B ATP . . . P 2 67.613 -5.05 -0.162 1 175.94 ? O2B ATP 601 H 1 
HETATM 8 O O3B ATP . . . P 2 66.046 -5.599 1.695 1 176.13 ? O3B ATP 601 H 1 
HETATM 9 P PA ATP . . . P 2 68.106 -8.731 0.866 1 179.45 ? PA ATP 601 H 1 
HETATM 10 O O1A ATP . . . P 2 68.58 -9.427 2.119 1 181.78 -1 O1A ATP 601 H 1 
HETATM 11 O O2A ATP . . . P 2 68.876 -8.884 -0.422 1 171.9 ? O2A ATP 601 H 1 
HETATM 12 O O3A ATP . . . P 2 67.89 -7.171 1.221 1 175.73 ? O3A ATP 601 H 1 
HETATM 13 O O5' ATP . . . P 2 66.636 -9.287 0.531 1 176.92 ? O5' ATP 601 H 1 
HETATM 14 C C5' ATP . . . P 2 66.452 -9.89 -0.747 1 172.03 ? C5' ATP 601 H 1 
HETATM 15 C C4' ATP . . . P 2 66.31 -11.4 -0.636 1 171.6 ? C4' ATP 601 H 1 
HETATM 16 O O4' ATP . . . P 2 66.785 -11.976 -1.851 1 180.45 ? O4' ATP 601 H 1 
HETATM 17 C C3' ATP . . . P 2 67.154 -11.994 0.482 1 172.44 ? C3' ATP 601 H 1 
HETATM 18 O O3' ATP . . . P 2 66.303 -12.571 1.475 1 174.07 ? O3' ATP 601 H 1 
HETATM 19 C C2' ATP . . . P 2 68.014 -13.067 -0.156 1 173.88 ? C2' ATP 601 H 1 
HETATM 20 O O2' ATP . . . P 2 67.845 -14.308 0.533 1 179.71 ? O2' ATP 601 H 1 
HETATM 21 C C1' ATP . . . P 2 67.506 -13.176 -1.584 1 174.18 ? C1' ATP 601 H 1 
HETATM 22 N N9 ATP . . . P 2 68.617 -13.332 -2.555 1 173.5 ? N9 ATP 601 H 1 
HETATM 23 C C8 ATP . . . P 2 69.75 -12.605 -2.6 1 176.72 ? C8 ATP 601 H 1 
HETATM 24 N N7 ATP . . . P 2 70.551 -13.017 -3.617 1 180.29 ? N7 ATP 601 H 1 
HETATM 25 C C5 ATP . . . P 2 69.926 -14.032 -4.242 1 174.8 ? C5 ATP 601 H 1 
HETATM 26 C C6 ATP . . . P 2 70.21 -14.922 -5.394 1 172.79 ? C6 ATP 601 H 1 
HETATM 27 N N6 ATP . . . P 2 71.358 -14.808 -6.103 1 176.56 ? N6 ATP 601 H 1 
HETATM 28 N N1 ATP . . . P 2 69.286 -15.853 -5.714 1 172.03 ? N1 ATP 601 H 1 
HETATM 29 C C2 ATP . . . P 2 68.14 -15.979 -5.021 1 172.7 ? C2 ATP 601 H 1 
HETATM 30 N N3 ATP . . . P 2 67.818 -15.208 -3.967 1 172.33 ? N3 ATP 601 H 1 
HETATM 31 C C4 ATP . . . P 2 68.654 -14.236 -3.535 1 173.23 ? C4 ATP 601 H 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           31 
#