data_6S5T # _model_server_result.job_id 1BV8srobAYdU0pT18tSDVw _model_server_result.datetime_utc '2024-11-22 11:02:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 6S5T # _exptl.entry_id 6S5T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S5T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6S5T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id ANP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 901 _pdbx_nonpoly_scheme.pdb_mon_id ANP _pdbx_nonpoly_scheme.auth_mon_id ANP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 56.95 93.92 60.452 1 129.28 ? PG ANP 901 A 1 HETATM 2 O O1G ANP . . . C 3 55.482 94.245 60.567 1 128.57 ? O1G ANP 901 A 1 HETATM 3 O O2G ANP . . . C 3 57.318 93.068 61.643 1 128.8 ? O2G ANP 901 A 1 HETATM 4 O O3G ANP . . . C 3 57.719 95.216 60.534 1 127.94 ? O3G ANP 901 A 1 HETATM 5 P PB ANP . . . C 3 58.613 92.412 58.497 1 123.52 ? PB ANP 901 A 1 HETATM 6 O O1B ANP . . . C 3 58.288 91.167 57.718 1 121.15 ? O1B ANP 901 A 1 HETATM 7 O O2B ANP . . . C 3 59.584 93.395 57.901 1 121.99 ? O2B ANP 901 A 1 HETATM 8 N N3B ANP . . . C 3 57.246 93.146 59.036 1 126.48 ? N3B ANP 901 A 1 HETATM 9 P PA ANP . . . C 3 60.552 92.421 60.719 1 96.3 ? PA ANP 901 A 1 HETATM 10 O O1A ANP . . . C 3 60.692 91.537 61.914 1 95.64 ? O1A ANP 901 A 1 HETATM 11 O O2A ANP . . . C 3 60.398 93.888 60.944 1 97.26 ? O2A ANP 901 A 1 HETATM 12 O O3A ANP . . . C 3 59.32 91.888 59.838 1 109.71 ? O3A ANP 901 A 1 HETATM 13 O O5' ANP . . . C 3 61.766 92.168 59.705 1 87.63 ? O5' ANP 901 A 1 HETATM 14 C C5' ANP . . . C 3 62.325 90.837 59.634 1 78.96 ? C5' ANP 901 A 1 HETATM 15 C C4' ANP . . . C 3 63.743 90.875 60.147 1 73.37 ? C4' ANP 901 A 1 HETATM 16 O O4' ANP . . . C 3 63.766 91.234 61.553 1 66.18 ? O4' ANP 901 A 1 HETATM 17 C C3' ANP . . . C 3 64.535 89.559 60.071 1 69.72 ? C3' ANP 901 A 1 HETATM 18 O O3' ANP . . . C 3 65.357 89.503 58.909 1 69.96 ? O3' ANP 901 A 1 HETATM 19 C C2' ANP . . . C 3 65.33 89.515 61.387 1 62.71 ? C2' ANP 901 A 1 HETATM 20 O O2' ANP . . . C 3 66.711 89.288 61.204 1 60.34 ? O2' ANP 901 A 1 HETATM 21 C C1' ANP . . . C 3 65.051 90.886 62.005 1 56.95 ? C1' ANP 901 A 1 HETATM 22 N N9 ANP . . . C 3 65.167 90.945 63.478 1 46.22 ? N9 ANP 901 A 1 HETATM 23 C C8 ANP . . . C 3 66.22 90.427 64.161 1 43.1 ? C8 ANP 901 A 1 HETATM 24 N N7 ANP . . . C 3 66.138 90.612 65.455 1 40.62 ? N7 ANP 901 A 1 HETATM 25 C C5 ANP . . . C 3 64.943 91.286 65.635 1 38.63 ? C5 ANP 901 A 1 HETATM 26 C C6 ANP . . . C 3 64.294 91.754 66.794 1 36.41 ? C6 ANP 901 A 1 HETATM 27 N N6 ANP . . . C 3 64.778 91.608 68.023 1 33.67 ? N6 ANP 901 A 1 HETATM 28 N N1 ANP . . . C 3 63.111 92.389 66.626 1 37.99 ? N1 ANP 901 A 1 HETATM 29 C C2 ANP . . . C 3 62.633 92.525 65.379 1 41.03 ? C2 ANP 901 A 1 HETATM 30 N N3 ANP . . . C 3 63.16 92.131 64.218 1 41.69 ? N3 ANP 901 A 1 HETATM 31 C C4 ANP . . . C 3 64.332 91.504 64.415 1 41.52 ? C4 ANP 901 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #