data_6S63 # _model_server_result.job_id F7Jq4-g2KdWv4WSKr3mqjQ _model_server_result.datetime_utc '2024-11-17 01:32:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":713}' # _entry.id 6S63 # _exptl.entry_id 6S63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S63 _cell.length_a 45.91 _cell.length_b 48.351 _cell.length_c 105.364 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 7 1_555 A N ALA 2 A ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.27 ? covale ? covale3 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.27 ? metalc ? metalc1 A OD2 ASP 5 A ASP 11 1_555 L CA CA . A CA 713 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A OD1 ASP 5 A ASP 11 1_555 M NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 A OD1 ASP 9 A ASP 15 1_555 M NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc4 A O ARG 11 A ARG 17 1_555 M NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc5 A OG1 THR 14 A THR 20 1_555 M NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc6 A OD1 ASP 40 A ASP 46 1_555 L CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc7 A OD2 ASP 40 A ASP 46 1_555 L CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 A OD2 ASP 42 A ASP 48 1_555 L CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc9 A O LEU 234 A LEU 240 1_555 L CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 Q O HOH . A HOH 586 1_555 L CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc11 Q O HOH . A HOH 589 1_555 L CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S63 _atom_sites.fract_transf_matrix[1][1] 0.021782 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 R16 A 1 302 302 R16 R16 . D 3 R16 A 1 303 303 R16 R16 . E 3 R16 A 1 304 304 R16 R16 . F 3 R16 A 1 305 305 R16 R16 . G 4 DD9 A 1 308 308 DD9 DD9 . H 4 DD9 A 1 309 309 DD9 DD9 . I 4 DD9 A 1 310 310 DD9 DD9 . J 4 DD9 A 1 311 311 DD9 DD9 . K 4 DD9 A 1 312 312 DD9 DD9 . L 5 CA A 1 713 713 CA CA . M 6 NA A 1 714 714 NA NA . N 7 CL A 1 715 715 CL CL . O 7 CL A 1 716 716 CL CL . P 7 CL A 1 717 717 CL CL . Q 8 HOH A 1 401 401 HOH HOH . Q 8 HOH A 2 402 402 HOH HOH . Q 8 HOH A 3 404 404 HOH HOH . Q 8 HOH A 4 406 406 HOH HOH . Q 8 HOH A 5 407 407 HOH HOH . Q 8 HOH A 6 411 411 HOH HOH . Q 8 HOH A 7 501 501 HOH HOH . Q 8 HOH A 8 512 512 HOH HOH . Q 8 HOH A 9 513 513 HOH HOH . Q 8 HOH A 10 520 520 HOH HOH . Q 8 HOH A 11 523 523 HOH HOH . Q 8 HOH A 12 525 525 HOH HOH . Q 8 HOH A 13 527 527 HOH HOH . Q 8 HOH A 14 528 528 HOH HOH . Q 8 HOH A 15 531 531 HOH HOH . Q 8 HOH A 16 534 534 HOH HOH . Q 8 HOH A 17 536 536 HOH HOH . Q 8 HOH A 18 538 538 HOH HOH . Q 8 HOH A 19 541 541 HOH HOH . Q 8 HOH A 20 544 544 HOH HOH . Q 8 HOH A 21 545 545 HOH HOH . Q 8 HOH A 22 546 546 HOH HOH . Q 8 HOH A 23 547 547 HOH HOH . Q 8 HOH A 24 549 549 HOH HOH . Q 8 HOH A 25 553 553 HOH HOH . Q 8 HOH A 26 554 554 HOH HOH . Q 8 HOH A 27 555 555 HOH HOH . Q 8 HOH A 28 556 556 HOH HOH . Q 8 HOH A 29 558 558 HOH HOH . Q 8 HOH A 30 561 561 HOH HOH . Q 8 HOH A 31 567 567 HOH HOH . Q 8 HOH A 32 575 575 HOH HOH . Q 8 HOH A 33 576 576 HOH HOH . Q 8 HOH A 34 578 578 HOH HOH . Q 8 HOH A 35 580 580 HOH HOH . Q 8 HOH A 36 582 582 HOH HOH . Q 8 HOH A 37 583 583 HOH HOH . Q 8 HOH A 38 584 584 HOH HOH . Q 8 HOH A 39 586 586 HOH HOH . Q 8 HOH A 40 587 587 HOH HOH . Q 8 HOH A 41 588 588 HOH HOH . Q 8 HOH A 42 589 589 HOH HOH . Q 8 HOH A 43 590 590 HOH HOH . Q 8 HOH A 44 591 591 HOH HOH . Q 8 HOH A 45 592 592 HOH HOH . Q 8 HOH A 46 593 593 HOH HOH . Q 8 HOH A 47 594 594 HOH HOH . Q 8 HOH A 48 595 595 HOH HOH . Q 8 HOH A 49 596 596 HOH HOH . Q 8 HOH A 50 598 598 HOH HOH . Q 8 HOH A 51 599 599 HOH HOH . Q 8 HOH A 52 600 600 HOH HOH . Q 8 HOH A 53 601 601 HOH HOH . Q 8 HOH A 54 602 602 HOH HOH . Q 8 HOH A 55 603 603 HOH HOH . Q 8 HOH A 56 604 604 HOH HOH . Q 8 HOH A 57 622 622 HOH HOH . Q 8 HOH A 58 625 625 HOH HOH . Q 8 HOH A 59 626 626 HOH HOH . Q 8 HOH A 60 627 627 HOH HOH . Q 8 HOH A 61 629 629 HOH HOH . Q 8 HOH A 62 630 630 HOH HOH . Q 8 HOH A 63 632 632 HOH HOH . Q 8 HOH A 64 633 633 HOH HOH . Q 8 HOH A 65 634 634 HOH HOH . Q 8 HOH A 66 635 635 HOH HOH . Q 8 HOH A 67 636 636 HOH HOH . Q 8 HOH A 68 637 637 HOH HOH . Q 8 HOH A 69 638 638 HOH HOH . Q 8 HOH A 70 641 641 HOH HOH . Q 8 HOH A 71 642 642 HOH HOH . Q 8 HOH A 72 645 645 HOH HOH . Q 8 HOH A 73 649 649 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 8.582 _atom_site.Cartn_y 3.771 _atom_site.Cartn_z -55.715 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 713 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #