data_6S6A # _model_server_result.job_id 3zbktj_HzfQZwCSKkeHLOg _model_server_result.datetime_utc '2024-12-26 12:10:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6S6A # _exptl.entry_id 6S6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S6A _cell.length_a 72.103 _cell.length_b 81.856 _cell.length_c 244.076 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,L,N,P 1 1 B,D,H,I,J,K,M,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 21 A THR 21 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 E O1G GTP . A GTP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 E O1B GTP . A GTP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc5 F MG MG . A MG 402 1_555 N O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? metalc ? metalc6 B OG1 THR 21 B THR 21 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc7 B OG1 THR 42 B THR 42 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 H O1G GTP . B GTP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc9 H O1B GTP . B GTP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc10 I MG MG . B MG 402 1_555 O O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc11 I MG MG . B MG 402 1_555 O O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 192 n n PG O2G GTP sing 193 n n PG O3G GTP sing 194 n n PG O3B GTP sing 195 n n O2G HOG2 GTP sing 196 n n O3G HOG3 GTP sing 197 n n O3B PB GTP sing 198 n n PB O1B GTP doub 199 n n PB O2B GTP sing 200 n n PB O3A GTP sing 201 n n O2B HOB2 GTP sing 202 n n O3A PA GTP sing 203 n n PA O1A GTP doub 204 n n PA O2A GTP sing 205 n n PA O5' GTP sing 206 n n O2A HOA2 GTP sing 207 n n O5' C5' GTP sing 208 n n C5' C4' GTP sing 209 n n C5' H5' GTP sing 210 n n C5' "H5''" GTP sing 211 n n C4' O4' GTP sing 212 n n C4' C3' GTP sing 213 n n C4' H4' GTP sing 214 n n O4' C1' GTP sing 215 n n C3' O3' GTP sing 216 n n C3' C2' GTP sing 217 n n C3' H3' GTP sing 218 n n O3' HO3' GTP sing 219 n n C2' O2' GTP sing 220 n n C2' C1' GTP sing 221 n n C2' H2' GTP sing 222 n n O2' HO2' GTP sing 223 n n C1' N9 GTP sing 224 n n C1' H1' GTP sing 225 n n N9 C8 GTP sing 226 n y N9 C4 GTP sing 227 n y C8 N7 GTP doub 228 n y C8 H8 GTP sing 229 n n N7 C5 GTP sing 230 n y C5 C6 GTP sing 231 n n C5 C4 GTP doub 232 n y C6 O6 GTP doub 233 n n C6 N1 GTP sing 234 n n N1 C2 GTP sing 235 n n N1 HN1 GTP sing 236 n n C2 N2 GTP sing 237 n n C2 N3 GTP doub 238 n n N2 HN21 GTP sing 239 n n N2 HN22 GTP sing 240 n n N3 C4 GTP sing 241 n n # _atom_sites.entry_id 6S6A _atom_sites.fract_transf_matrix[1][1] 0.013869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 401 1 GTP GTP . F 4 MG A 1 402 1 MG MG . G 5 9JE A 1 403 1 9JE PEN . H 3 GTP B 1 401 2 GTP GTP . I 4 MG B 1 402 2 MG MG . J 5 9JE B 1 403 2 9JE PEN . K 5 9JE B 1 404 3 9JE PEN . L 6 GDP C 1 401 3 GDP GDP . M 6 GDP D 1 401 4 GDP GDP . N 7 HOH A 1 501 78 HOH HOH . N 7 HOH A 2 502 32 HOH HOH . N 7 HOH A 3 503 16 HOH HOH . N 7 HOH A 4 504 79 HOH HOH . N 7 HOH A 5 505 54 HOH HOH . N 7 HOH A 6 506 71 HOH HOH . N 7 HOH A 7 507 3 HOH HOH . N 7 HOH A 8 508 7 HOH HOH . N 7 HOH A 9 509 72 HOH HOH . N 7 HOH A 10 510 31 HOH HOH . N 7 HOH A 11 511 12 HOH HOH . N 7 HOH A 12 512 29 HOH HOH . N 7 HOH A 13 513 27 HOH HOH . N 7 HOH A 14 514 33 HOH HOH . N 7 HOH A 15 515 8 HOH HOH . N 7 HOH A 16 516 70 HOH HOH . N 7 HOH A 17 517 2 HOH HOH . N 7 HOH A 18 518 82 HOH HOH . N 7 HOH A 19 519 10 HOH HOH . N 7 HOH A 20 520 25 HOH HOH . N 7 HOH A 21 521 13 HOH HOH . N 7 HOH A 22 522 56 HOH HOH . N 7 HOH A 23 523 46 HOH HOH . N 7 HOH A 24 524 24 HOH HOH . N 7 HOH A 25 525 63 HOH HOH . N 7 HOH A 26 526 64 HOH HOH . N 7 HOH A 27 527 57 HOH HOH . N 7 HOH A 28 528 51 HOH HOH . N 7 HOH A 29 529 65 HOH HOH . O 7 HOH B 1 501 80 HOH HOH . O 7 HOH B 2 502 68 HOH HOH . O 7 HOH B 3 503 81 HOH HOH . O 7 HOH B 4 504 21 HOH HOH . O 7 HOH B 5 505 67 HOH HOH . O 7 HOH B 6 506 18 HOH HOH . O 7 HOH B 7 507 75 HOH HOH . O 7 HOH B 8 508 14 HOH HOH . O 7 HOH B 9 509 61 HOH HOH . O 7 HOH B 10 510 49 HOH HOH . O 7 HOH B 11 511 11 HOH HOH . O 7 HOH B 12 512 53 HOH HOH . O 7 HOH B 13 513 50 HOH HOH . O 7 HOH B 14 514 58 HOH HOH . O 7 HOH B 15 515 17 HOH HOH . O 7 HOH B 16 516 38 HOH HOH . O 7 HOH B 17 517 34 HOH HOH . O 7 HOH B 18 518 59 HOH HOH . O 7 HOH B 19 519 47 HOH HOH . O 7 HOH B 20 520 62 HOH HOH . O 7 HOH B 21 521 26 HOH HOH . O 7 HOH B 22 522 60 HOH HOH . O 7 HOH B 23 523 77 HOH HOH . O 7 HOH B 24 524 48 HOH HOH . O 7 HOH B 25 525 69 HOH HOH . O 7 HOH B 26 526 55 HOH HOH . P 7 HOH C 1 501 41 HOH HOH . P 7 HOH C 2 502 22 HOH HOH . P 7 HOH C 3 503 19 HOH HOH . P 7 HOH C 4 504 4 HOH HOH . P 7 HOH C 5 505 40 HOH HOH . P 7 HOH C 6 506 9 HOH HOH . P 7 HOH C 7 507 20 HOH HOH . P 7 HOH C 8 508 83 HOH HOH . P 7 HOH C 9 509 76 HOH HOH . P 7 HOH C 10 510 42 HOH HOH . P 7 HOH C 11 511 66 HOH HOH . P 7 HOH C 12 512 73 HOH HOH . P 7 HOH C 13 513 35 HOH HOH . P 7 HOH C 14 514 37 HOH HOH . P 7 HOH C 15 515 74 HOH HOH . P 7 HOH C 16 516 39 HOH HOH . P 7 HOH C 17 517 15 HOH HOH . Q 7 HOH D 1 501 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 3 43.828 34.497 -20.847 1 65.96 ? PG GTP 401 A 1 HETATM 2 O O1G GTP . . . E 3 42.346 34.601 -20.922 1 52.72 ? O1G GTP 401 A 1 HETATM 3 O O2G GTP . . . E 3 44.344 33.322 -21.64 1 67.94 ? O2G GTP 401 A 1 HETATM 4 O O3G GTP . . . E 3 44.497 35.781 -21.197 1 56.92 ? O3G GTP 401 A 1 HETATM 5 O O3B GTP . . . E 3 44.313 34.181 -19.334 1 69.29 ? O3B GTP 401 A 1 HETATM 6 P PB GTP . . . E 3 44.085 34.884 -17.916 1 60.38 ? PB GTP 401 A 1 HETATM 7 O O1B GTP . . . E 3 42.756 35.534 -17.971 1 54.09 ? O1B GTP 401 A 1 HETATM 8 O O2B GTP . . . E 3 45.281 35.683 -17.568 1 65.58 ? O2B GTP 401 A 1 HETATM 9 O O3A GTP . . . E 3 44.1 33.621 -16.935 1 60.15 ? O3A GTP 401 A 1 HETATM 10 P PA GTP . . . E 3 42.985 32.952 -16.007 1 59.23 ? PA GTP 401 A 1 HETATM 11 O O1A GTP . . . E 3 41.814 32.523 -16.828 1 68.01 ? O1A GTP 401 A 1 HETATM 12 O O2A GTP . . . E 3 42.714 33.849 -14.858 1 61.32 ? O2A GTP 401 A 1 HETATM 13 O O5' GTP . . . E 3 43.744 31.642 -15.533 1 65.09 ? O5' GTP 401 A 1 HETATM 14 C C5' GTP . . . E 3 44.824 31.676 -14.605 1 61.8 ? C5' GTP 401 A 1 HETATM 15 C C4' GTP . . . E 3 45.03 30.302 -14.022 1 60.84 ? C4' GTP 401 A 1 HETATM 16 O O4' GTP . . . E 3 45.982 30.444 -12.947 1 72.39 ? O4' GTP 401 A 1 HETATM 17 C C3' GTP . . . E 3 43.821 29.642 -13.349 1 66.11 ? C3' GTP 401 A 1 HETATM 18 O O3' GTP . . . E 3 44.009 28.281 -13.007 1 67.58 ? O3' GTP 401 A 1 HETATM 19 C C2' GTP . . . E 3 43.805 30.378 -12.017 1 68.42 ? C2' GTP 401 A 1 HETATM 20 O O2' GTP . . . E 3 43.05 29.708 -11.037 1 64.27 ? O2' GTP 401 A 1 HETATM 21 C C1' GTP . . . E 3 45.301 30.408 -11.712 1 68.58 ? C1' GTP 401 A 1 HETATM 22 N N9 GTP . . . E 3 45.688 31.574 -10.936 1 65.92 ? N9 GTP 401 A 1 HETATM 23 C C8 GTP . . . E 3 45.221 32.855 -11.082 1 60.63 ? C8 GTP 401 A 1 HETATM 24 N N7 GTP . . . E 3 45.703 33.69 -10.197 1 65.52 ? N7 GTP 401 A 1 HETATM 25 C C5 GTP . . . E 3 46.541 32.902 -9.423 1 67.76 ? C5 GTP 401 A 1 HETATM 26 C C6 GTP . . . E 3 47.338 33.255 -8.312 1 63.56 ? C6 GTP 401 A 1 HETATM 27 O O6 GTP . . . E 3 47.456 34.361 -7.775 1 68.92 ? O6 GTP 401 A 1 HETATM 28 N N1 GTP . . . E 3 48.024 32.153 -7.818 1 67.72 ? N1 GTP 401 A 1 HETATM 29 C C2 GTP . . . E 3 47.982 30.886 -8.337 1 63.73 ? C2 GTP 401 A 1 HETATM 30 N N2 GTP . . . E 3 48.734 29.967 -7.723 1 64.23 ? N2 GTP 401 A 1 HETATM 31 N N3 GTP . . . E 3 47.235 30.546 -9.382 1 68.56 ? N3 GTP 401 A 1 HETATM 32 C C4 GTP . . . E 3 46.546 31.601 -9.869 1 66.54 ? C4 GTP 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #