data_6S6A # _model_server_result.job_id TA60zPu4SfN17FvIc7yxfQ _model_server_result.datetime_utc '2024-12-26 12:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 6S6A # _exptl.entry_id 6S6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.148 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pentane-1,5-diol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S6A _cell.length_a 72.103 _cell.length_b 81.856 _cell.length_c 244.076 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,L,N,P 1 1 B,D,H,I,J,K,M,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 21 A THR 21 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 E O1G GTP . A GTP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 E O1B GTP . A GTP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc5 F MG MG . A MG 402 1_555 N O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? metalc ? metalc6 B OG1 THR 21 B THR 21 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc7 B OG1 THR 42 B THR 42 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 H O1G GTP . B GTP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc9 H O1B GTP . B GTP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc10 I MG MG . B MG 402 1_555 O O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc11 I MG MG . B MG 402 1_555 O O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? # _chem_comp.formula 'C5 H12 O2' _chem_comp.formula_weight 104.148 _chem_comp.id 9JE _chem_comp.mon_nstd_flag . _chem_comp.name pentane-1,5-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 9JE sing 1 n n C02 C03 9JE sing 2 n n C03 C04 9JE sing 3 n n C04 C05 9JE sing 4 n n C05 C06 9JE sing 5 n n O07 C06 9JE sing 6 n n C02 H1 9JE sing 7 n n C02 H2 9JE sing 8 n n C03 H3 9JE sing 9 n n C03 H4 9JE sing 10 n n C04 H5 9JE sing 11 n n C04 H6 9JE sing 12 n n C05 H7 9JE sing 13 n n C05 H8 9JE sing 14 n n C06 H9 9JE sing 15 n n C06 H10 9JE sing 16 n n O01 H11 9JE sing 17 n n O07 H12 9JE sing 18 n n # _atom_sites.entry_id 6S6A _atom_sites.fract_transf_matrix[1][1] 0.013869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 401 1 GTP GTP . F 4 MG A 1 402 1 MG MG . G 5 9JE A 1 403 1 9JE PEN . H 3 GTP B 1 401 2 GTP GTP . I 4 MG B 1 402 2 MG MG . J 5 9JE B 1 403 2 9JE PEN . K 5 9JE B 1 404 3 9JE PEN . L 6 GDP C 1 401 3 GDP GDP . M 6 GDP D 1 401 4 GDP GDP . N 7 HOH A 1 501 78 HOH HOH . N 7 HOH A 2 502 32 HOH HOH . N 7 HOH A 3 503 16 HOH HOH . N 7 HOH A 4 504 79 HOH HOH . N 7 HOH A 5 505 54 HOH HOH . N 7 HOH A 6 506 71 HOH HOH . N 7 HOH A 7 507 3 HOH HOH . N 7 HOH A 8 508 7 HOH HOH . N 7 HOH A 9 509 72 HOH HOH . N 7 HOH A 10 510 31 HOH HOH . N 7 HOH A 11 511 12 HOH HOH . N 7 HOH A 12 512 29 HOH HOH . N 7 HOH A 13 513 27 HOH HOH . N 7 HOH A 14 514 33 HOH HOH . N 7 HOH A 15 515 8 HOH HOH . N 7 HOH A 16 516 70 HOH HOH . N 7 HOH A 17 517 2 HOH HOH . N 7 HOH A 18 518 82 HOH HOH . N 7 HOH A 19 519 10 HOH HOH . N 7 HOH A 20 520 25 HOH HOH . N 7 HOH A 21 521 13 HOH HOH . N 7 HOH A 22 522 56 HOH HOH . N 7 HOH A 23 523 46 HOH HOH . N 7 HOH A 24 524 24 HOH HOH . N 7 HOH A 25 525 63 HOH HOH . N 7 HOH A 26 526 64 HOH HOH . N 7 HOH A 27 527 57 HOH HOH . N 7 HOH A 28 528 51 HOH HOH . N 7 HOH A 29 529 65 HOH HOH . O 7 HOH B 1 501 80 HOH HOH . O 7 HOH B 2 502 68 HOH HOH . O 7 HOH B 3 503 81 HOH HOH . O 7 HOH B 4 504 21 HOH HOH . O 7 HOH B 5 505 67 HOH HOH . O 7 HOH B 6 506 18 HOH HOH . O 7 HOH B 7 507 75 HOH HOH . O 7 HOH B 8 508 14 HOH HOH . O 7 HOH B 9 509 61 HOH HOH . O 7 HOH B 10 510 49 HOH HOH . O 7 HOH B 11 511 11 HOH HOH . O 7 HOH B 12 512 53 HOH HOH . O 7 HOH B 13 513 50 HOH HOH . O 7 HOH B 14 514 58 HOH HOH . O 7 HOH B 15 515 17 HOH HOH . O 7 HOH B 16 516 38 HOH HOH . O 7 HOH B 17 517 34 HOH HOH . O 7 HOH B 18 518 59 HOH HOH . O 7 HOH B 19 519 47 HOH HOH . O 7 HOH B 20 520 62 HOH HOH . O 7 HOH B 21 521 26 HOH HOH . O 7 HOH B 22 522 60 HOH HOH . O 7 HOH B 23 523 77 HOH HOH . O 7 HOH B 24 524 48 HOH HOH . O 7 HOH B 25 525 69 HOH HOH . O 7 HOH B 26 526 55 HOH HOH . P 7 HOH C 1 501 41 HOH HOH . P 7 HOH C 2 502 22 HOH HOH . P 7 HOH C 3 503 19 HOH HOH . P 7 HOH C 4 504 4 HOH HOH . P 7 HOH C 5 505 40 HOH HOH . P 7 HOH C 6 506 9 HOH HOH . P 7 HOH C 7 507 20 HOH HOH . P 7 HOH C 8 508 83 HOH HOH . P 7 HOH C 9 509 76 HOH HOH . P 7 HOH C 10 510 42 HOH HOH . P 7 HOH C 11 511 66 HOH HOH . P 7 HOH C 12 512 73 HOH HOH . P 7 HOH C 13 513 35 HOH HOH . P 7 HOH C 14 514 37 HOH HOH . P 7 HOH C 15 515 74 HOH HOH . P 7 HOH C 16 516 39 HOH HOH . P 7 HOH C 17 517 15 HOH HOH . Q 7 HOH D 1 501 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 9JE . . . J 5 14.649 39.906 31.191 1 77.01 ? C02 9JE 403 B 1 HETATM 2 C C03 9JE . . . J 5 14.868 38.987 32.388 1 75.85 ? C03 9JE 403 B 1 HETATM 3 C C04 9JE . . . J 5 13.71 37.999 32.402 1 78.97 ? C04 9JE 403 B 1 HETATM 4 C C05 9JE . . . J 5 13.421 37.409 33.766 1 84.56 ? C05 9JE 403 B 1 HETATM 5 C C06 9JE . . . J 5 14.285 36.206 34.099 1 88.71 ? C06 9JE 403 B 1 HETATM 6 O O01 9JE . . . J 5 15.745 40.731 30.977 1 73.01 ? O01 9JE 403 B 1 HETATM 7 O O07 9JE . . . J 5 13.795 35.626 35.285 1 107.95 ? O07 9JE 403 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #