data_6S6C # _model_server_result.job_id 5FyJejiCU0DziwEhBNdqDQ _model_server_result.datetime_utc '2024-11-17 10:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":309}' # _entry.id 6S6C # _exptl.entry_id 6S6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.255 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description nonane _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S6C _cell.length_a 44.669 _cell.length_b 47.357 _cell.length_c 104.193 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 7 1_555 A N ALA 2 A ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.273 ? covale ? covale3 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.17 ? metalc ? metalc1 A OD2 ASP 5 A ASP 11 1_555 N CA CA . A CA 713 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A OD1 ASP 5 A ASP 11 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 A OD1 ASP 9 A ASP 15 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc4 A OG1 THR 14 A THR 20 1_555 O NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc5 A OD1 ASP 40 A ASP 46 1_555 N CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 A OD2 ASP 40 A ASP 46 1_555 N CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc7 A OD2 ASP 42 A ASP 48 1_555 N CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc8 A O LEU 234 A LEU 240 1_555 N CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 S O HOH . A HOH 586 1_555 N CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 S O HOH . A HOH 589 1_555 N CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? # _chem_comp.formula 'C9 H20' _chem_comp.formula_weight 128.255 _chem_comp.id DD9 _chem_comp.mon_nstd_flag . _chem_comp.name nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 DD9 sing 120 n n C1 H1 DD9 sing 121 n n C1 H1A DD9 sing 122 n n C1 H1B DD9 sing 123 n n C3 C2 DD9 sing 124 n n C2 H2 DD9 sing 125 n n C2 H2A DD9 sing 126 n n C4 C3 DD9 sing 127 n n C3 H3 DD9 sing 128 n n C3 H3A DD9 sing 129 n n C5 C4 DD9 sing 130 n n C4 H4 DD9 sing 131 n n C4 H4A DD9 sing 132 n n C6 C5 DD9 sing 133 n n C5 H5 DD9 sing 134 n n C5 H5A DD9 sing 135 n n C7 C6 DD9 sing 136 n n C6 H6 DD9 sing 137 n n C6 H6A DD9 sing 138 n n C8 C7 DD9 sing 139 n n C7 H7 DD9 sing 140 n n C7 H7A DD9 sing 141 n n C9 C8 DD9 sing 142 n n C8 H8 DD9 sing 143 n n C8 H8A DD9 sing 144 n n C9 H9 DD9 sing 145 n n C9 H9A DD9 sing 146 n n C9 H9B DD9 sing 147 n n # _atom_sites.entry_id 6S6C _atom_sites.fract_transf_matrix[1][1] 0.022387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 R16 A 1 302 302 R16 R16 . D 3 R16 A 1 303 303 R16 R16 . E 3 R16 A 1 304 304 R16 R16 . F 3 R16 A 1 305 305 R16 R16 . G 4 D12 A 1 307 307 D12 D12 . H 3 R16 A 1 308 308 R16 R16 . I 5 DD9 A 1 309 309 DD9 DD9 . J 5 DD9 A 1 310 310 DD9 DD9 . K 5 DD9 A 1 311 311 DD9 DD9 . L 5 DD9 A 1 312 312 DD9 DD9 . M 3 R16 A 1 314 314 R16 R16 . N 6 CA A 1 713 713 CA CA . O 7 NA A 1 714 714 NA NA . P 8 CL A 1 715 715 CL CL . Q 8 CL A 1 716 716 CL CL . R 8 CL A 1 717 717 CL CL . S 9 HOH A 1 563 563 HOH HOH . S 9 HOH A 2 585 585 HOH HOH . S 9 HOH A 3 406 406 HOH HOH . S 9 HOH A 4 407 407 HOH HOH . S 9 HOH A 5 527 527 HOH HOH . S 9 HOH A 6 603 603 HOH HOH . S 9 HOH A 7 402 402 HOH HOH . S 9 HOH A 8 582 582 HOH HOH . S 9 HOH A 9 525 525 HOH HOH . S 9 HOH A 10 578 578 HOH HOH . S 9 HOH A 11 634 634 HOH HOH . S 9 HOH A 12 554 554 HOH HOH . S 9 HOH A 13 592 592 HOH HOH . S 9 HOH A 14 559 559 HOH HOH . S 9 HOH A 15 595 595 HOH HOH . S 9 HOH A 16 601 601 HOH HOH . S 9 HOH A 17 536 536 HOH HOH . S 9 HOH A 18 594 594 HOH HOH . S 9 HOH A 19 528 528 HOH HOH . S 9 HOH A 20 643 643 HOH HOH . S 9 HOH A 21 604 604 HOH HOH . S 9 HOH A 22 526 526 HOH HOH . S 9 HOH A 23 562 562 HOH HOH . S 9 HOH A 24 596 596 HOH HOH . S 9 HOH A 25 637 637 HOH HOH . S 9 HOH A 26 630 630 HOH HOH . S 9 HOH A 27 501 501 HOH HOH . S 9 HOH A 28 600 600 HOH HOH . S 9 HOH A 29 622 622 HOH HOH . S 9 HOH A 30 632 632 HOH HOH . S 9 HOH A 31 547 547 HOH HOH . S 9 HOH A 32 543 543 HOH HOH . S 9 HOH A 33 555 555 HOH HOH . S 9 HOH A 34 593 593 HOH HOH . S 9 HOH A 35 571 571 HOH HOH . S 9 HOH A 36 404 404 HOH HOH . S 9 HOH A 37 635 635 HOH HOH . S 9 HOH A 38 628 628 HOH HOH . S 9 HOH A 39 524 524 HOH HOH . S 9 HOH A 40 512 512 HOH HOH . S 9 HOH A 41 538 538 HOH HOH . S 9 HOH A 42 646 646 HOH HOH . S 9 HOH A 43 587 587 HOH HOH . S 9 HOH A 44 553 553 HOH HOH . S 9 HOH A 45 531 531 HOH HOH . S 9 HOH A 46 546 546 HOH HOH . S 9 HOH A 47 591 591 HOH HOH . S 9 HOH A 48 401 401 HOH HOH . S 9 HOH A 49 588 588 HOH HOH . S 9 HOH A 50 439 539 HOH HOH . S 9 HOH A 51 641 641 HOH HOH . S 9 HOH A 52 627 627 HOH HOH . S 9 HOH A 53 544 544 HOH HOH . S 9 HOH A 54 522 522 HOH HOH . S 9 HOH A 55 549 549 HOH HOH . S 9 HOH A 56 599 599 HOH HOH . S 9 HOH A 57 645 645 HOH HOH . S 9 HOH A 58 568 568 HOH HOH . S 9 HOH A 59 590 590 HOH HOH . S 9 HOH A 60 586 586 HOH HOH . S 9 HOH A 61 633 633 HOH HOH . S 9 HOH A 62 625 625 HOH HOH . S 9 HOH A 63 589 589 HOH HOH . S 9 HOH A 64 561 561 HOH HOH . S 9 HOH A 65 598 598 HOH HOH . S 9 HOH A 66 602 602 HOH HOH . S 9 HOH A 67 523 523 HOH HOH . S 9 HOH A 68 636 636 HOH HOH . S 9 HOH A 69 534 534 HOH HOH . S 9 HOH A 70 583 583 HOH HOH . S 9 HOH A 71 566 566 HOH HOH . S 9 HOH A 72 558 558 HOH HOH . S 9 HOH A 73 513 513 HOH HOH . S 9 HOH A 74 576 576 HOH HOH . S 9 HOH A 75 575 575 HOH HOH . S 9 HOH A 76 560 560 HOH HOH . S 9 HOH A 77 532 532 HOH HOH . S 9 HOH A 78 638 638 HOH HOH . S 9 HOH A 79 639 639 HOH HOH . S 9 HOH A 80 541 541 HOH HOH . S 9 HOH A 81 548 548 HOH HOH . S 9 HOH A 82 644 644 HOH HOH . S 9 HOH A 83 629 629 HOH HOH . S 9 HOH A 84 552 552 HOH HOH . S 9 HOH A 85 530 530 HOH HOH . S 9 HOH A 86 520 520 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 DD9 . A . I 5 18.121 1.875 -19.41 0.5 28.22 ? C2 DD9 309 A 1 HETATM 2 C C2 DD9 . B . I 5 18.743 2.154 -20.721 0.5 33.24 ? C2 DD9 309 A 1 HETATM 3 C C3 DD9 . A . I 5 17.405 0.553 -19.535 0.5 29.51 ? C3 DD9 309 A 1 HETATM 4 C C3 DD9 . B . I 5 18.481 0.679 -20.556 0.5 32.99 ? C3 DD9 309 A 1 HETATM 5 C C4 DD9 . A . I 5 17.669 -0.404 -18.4 0.5 29.24 ? C4 DD9 309 A 1 HETATM 6 C C4 DD9 . B . I 5 18.098 0.266 -19.157 0.5 32.81 ? C4 DD9 309 A 1 HETATM 7 C C5 DD9 . A . I 5 17.983 -1.816 -18.829 0.5 29.82 ? C5 DD9 309 A 1 HETATM 8 C C5 DD9 . B . I 5 18.827 -0.953 -18.646 0.5 31.94 ? C5 DD9 309 A 1 HETATM 9 C C6 DD9 . A . I 5 18.004 -2.814 -17.697 0.5 30.28 ? C6 DD9 309 A 1 HETATM 10 C C6 DD9 . B . I 5 17.981 -1.865 -17.792 0.5 30.73 ? C6 DD9 309 A 1 HETATM 11 C C7 DD9 . A . I 5 18.641 -4.138 -18.043 0.5 33.04 ? C7 DD9 309 A 1 HETATM 12 C C7 DD9 . B . I 5 18.483 -3.286 -17.702 0.5 30.02 ? C7 DD9 309 A 1 HETATM 13 C C8 DD9 . A . I 5 17.697 -5.138 -18.653 0.5 33.48 ? C8 DD9 309 A 1 HETATM 14 C C8 DD9 . B . I 5 17.409 -4.34 -17.8 0.5 27.72 ? C8 DD9 309 A 1 HETATM 15 C C9 DD9 . A . I 5 18.353 -6.45 -19.015 0.5 34.6 ? C9 DD9 309 A 1 HETATM 16 C C9 DD9 . B . I 5 17.836 -5.701 -17.298 0.5 27.33 ? C9 DD9 309 A 1 HETATM 17 H H2 DD9 . A . I 5 18.85 1.779 -18.76 0.5 28.31 ? H2 DD9 309 A 1 HETATM 18 H H2 DD9 . B . I 5 19.561 2.386 -20.23 0.5 33.15 ? H2 DD9 309 A 1 HETATM 19 H H2A DD9 . A . I 5 17.492 2.543 -19.06 0.5 28.44 ? H2A DD9 309 A 1 HETATM 20 H H2A DD9 . B . I 5 18 2.653 -20.318 0.5 32.78 ? H2A DD9 309 A 1 HETATM 21 H H3 DD9 . A . I 5 17.677 0.127 -20.376 0.5 29.31 ? H3 DD9 309 A 1 HETATM 22 H H3 DD9 . B . I 5 19.288 0.186 -20.819 0.5 32.9 ? H3 DD9 309 A 1 HETATM 23 H H3A DD9 . A . I 5 16.44 0.723 -19.585 0.5 29.17 ? H3A DD9 309 A 1 HETATM 24 H H3A DD9 . B . I 5 17.761 0.418 -21.169 0.5 33.06 ? H3A DD9 309 A 1 HETATM 25 H H4 DD9 . A . I 5 16.881 -0.422 -17.817 0.5 28.85 ? H4 DD9 309 A 1 HETATM 26 H H4 DD9 . B . I 5 17.134 0.087 -19.135 0.5 32.8 ? H4 DD9 309 A 1 HETATM 27 H H4A DD9 . A . I 5 18.421 -0.062 -17.871 0.5 29.37 ? H4A DD9 309 A 1 HETATM 28 H H4A DD9 . B . I 5 18.274 1.015 -18.549 0.5 32.49 ? H4A DD9 309 A 1 HETATM 29 H H5 DD9 . A . I 5 18.859 -1.823 -19.271 0.5 29.42 ? H5 DD9 309 A 1 HETATM 30 H H5 DD9 . B . I 5 19.602 -0.659 -18.121 0.5 31.85 ? H5 DD9 309 A 1 HETATM 31 H H5A DD9 . A . I 5 17.316 -2.101 -19.488 0.5 28.11 ? H5A DD9 309 A 1 HETATM 32 H H5A DD9 . B . I 5 19.164 -1.462 -19.414 0.5 31.93 ? H5A DD9 309 A 1 HETATM 33 H H6 DD9 . A . I 5 17.083 -2.977 -17.404 0.5 28.89 ? H6 DD9 309 A 1 HETATM 34 H H6 DD9 . B . I 5 17.072 -1.878 -18.157 0.5 28.67 ? H6 DD9 309 A 1 HETATM 35 H H6A DD9 . A . I 5 18.49 -2.421 -16.941 0.5 30.49 ? H6A DD9 309 A 1 HETATM 36 H H6A DD9 . B . I 5 17.932 -1.491 -16.887 0.5 30.54 ? H6A DD9 309 A 1 HETATM 37 H H7 DD9 . A . I 5 19.023 -4.525 -17.226 0.5 32.86 ? H7 DD9 309 A 1 HETATM 38 H H7 DD9 . B . I 5 18.955 -3.397 -16.849 0.5 29.96 ? H7 DD9 309 A 1 HETATM 39 H H7A DD9 . A . I 5 19.379 -3.979 -18.669 0.5 32.66 ? H7A DD9 309 A 1 HETATM 40 H H7A DD9 . B . I 5 19.134 -3.434 -18.421 0.5 29.74 ? H7A DD9 309 A 1 HETATM 41 H H8 DD9 . A . I 5 17.3 -4.747 -19.46 0.5 33.07 ? H8 DD9 309 A 1 HETATM 42 H H8 DD9 . B . I 5 17.133 -4.421 -18.739 0.5 27.94 ? H8 DD9 309 A 1 HETATM 43 H H8A DD9 . A . I 5 16.969 -5.313 -18.017 0.5 33.46 ? H8A DD9 309 A 1 HETATM 44 H H8A DD9 . B . I 5 16.629 -4.043 -17.284 0.5 27.86 ? H8A DD9 309 A 1 HETATM 45 H H9 DD9 . A . I 5 18.149 -7.115 -18.334 0.5 34.48 ? H9 DD9 309 A 1 HETATM 46 H H9 DD9 . B . I 5 17.252 -5.978 -16.571 0.5 26.95 ? H9 DD9 309 A 1 HETATM 47 H H9A DD9 . A . I 5 19.316 -6.328 -19.068 0.5 34.41 ? H9A DD9 309 A 1 HETATM 48 H H9A DD9 . B . I 5 18.753 -5.657 -16.977 0.5 27.54 ? H9A DD9 309 A 1 HETATM 49 H H9B DD9 . A . I 5 18.017 -6.755 -19.876 0.5 34.47 ? H9B DD9 309 A 1 HETATM 50 H H9B DD9 . B . I 5 17.778 -6.348 -18.023 0.5 27.23 ? H9B DD9 309 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #