data_6S6D
#
_model_server_result.job_id            hfBB0btrtZwK9b5gG9V13w 
_model_server_result.datetime_utc      '2024-10-11 07:16:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":403}' 
#
_entry.id    6S6D 
#
_exptl.entry_id    6S6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.148 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            pentane-1,5-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6S6D 
_cell.length_a            71.504 
_cell.length_b            81.439 
_cell.length_c            246.033 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,M,N 1 1 
C,D,H,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 21 A THR 21 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc3 E O1G GTP . A GTP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc4 E O1B GTP . A GTP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc5 F MG MG . A MG 402 1_555 M O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc6 F MG MG . A MG 402 1_555 M O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc7 C OG1 THR 21 B THR 21 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc8 C OG1 THR 42 B THR 42 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc9 H O1G GTP . B GTP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc10 H O1B GTP . B GTP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc11 I MG MG . B MG 402 1_555 O O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc12 I MG MG . B MG 402 1_555 O O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
#
_chem_comp.formula           'C5 H12 O2' 
_chem_comp.formula_weight    104.148 
_chem_comp.id                9JE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              pentane-1,5-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 9JE sing 1 n n 
C02 C03 9JE sing 2 n n 
C03 C04 9JE sing 3 n n 
C04 C05 9JE sing 4 n n 
C05 C06 9JE sing 5 n n 
O07 C06 9JE sing 6 n n 
C02 H1 9JE sing 7 n n 
C02 H2 9JE sing 8 n n 
C03 H3 9JE sing 9 n n 
C03 H4 9JE sing 10 n n 
C04 H5 9JE sing 11 n n 
C04 H6 9JE sing 12 n n 
C05 H7 9JE sing 13 n n 
C05 H8 9JE sing 14 n n 
C06 H9 9JE sing 15 n n 
C06 H10 9JE sing 16 n n 
O01 H11 9JE sing 17 n n 
O07 H12 9JE sing 18 n n 
#
_atom_sites.entry_id                     6S6D 
_atom_sites.fract_transf_matrix[1][1]    0.013985 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GTP A 1 401 1 GTP GTP . 
F 4 MG A 1 402 1 MG MG . 
G 5 GDP C 1 401 3 GDP GDP . 
H 3 GTP B 1 401 2 GTP GTP . 
I 4 MG B 1 402 2 MG MG . 
J 6 9JE B 1 403 1 9JE PEN . 
K 6 9JE B 1 404 2 9JE PEN . 
L 5 GDP D 1 401 4 GDP GDP . 
M 7 HOH A 1 501 113 HOH HOH . 
M 7 HOH A 2 502 117 HOH HOH . 
M 7 HOH A 3 503 119 HOH HOH . 
M 7 HOH A 4 504 112 HOH HOH . 
M 7 HOH A 5 505 111 HOH HOH . 
M 7 HOH A 6 506 19 HOH HOH . 
M 7 HOH A 7 507 118 HOH HOH . 
M 7 HOH A 8 508 72 HOH HOH . 
M 7 HOH A 9 509 102 HOH HOH . 
M 7 HOH A 10 510 88 HOH HOH . 
M 7 HOH A 11 511 21 HOH HOH . 
M 7 HOH A 12 512 17 HOH HOH . 
M 7 HOH A 13 513 28 HOH HOH . 
M 7 HOH A 14 514 12 HOH HOH . 
N 7 HOH C 1 501 25 HOH HOH . 
N 7 HOH C 2 502 116 HOH HOH . 
N 7 HOH C 3 503 9 HOH HOH . 
N 7 HOH C 4 504 110 HOH HOH . 
N 7 HOH C 5 505 53 HOH HOH . 
N 7 HOH C 6 506 68 HOH HOH . 
N 7 HOH C 7 507 64 HOH HOH . 
N 7 HOH C 8 508 20 HOH HOH . 
N 7 HOH C 9 509 24 HOH HOH . 
N 7 HOH C 10 510 37 HOH HOH . 
N 7 HOH C 11 511 49 HOH HOH . 
N 7 HOH C 12 512 115 HOH HOH . 
N 7 HOH C 13 513 1 HOH HOH . 
N 7 HOH C 14 514 114 HOH HOH . 
N 7 HOH C 15 515 40 HOH HOH . 
O 7 HOH B 1 501 2 HOH HOH . 
O 7 HOH B 2 502 3 HOH HOH . 
O 7 HOH B 3 503 43 HOH HOH . 
O 7 HOH B 4 504 4 HOH HOH . 
O 7 HOH B 5 505 41 HOH HOH . 
O 7 HOH B 6 506 78 HOH HOH . 
O 7 HOH B 7 507 27 HOH HOH . 
O 7 HOH B 8 508 50 HOH HOH . 
O 7 HOH B 9 509 60 HOH HOH . 
O 7 HOH B 10 510 18 HOH HOH . 
O 7 HOH B 11 511 101 HOH HOH . 
O 7 HOH B 12 512 42 HOH HOH . 
O 7 HOH B 13 513 16 HOH HOH . 
O 7 HOH B 14 514 31 HOH HOH . 
O 7 HOH B 15 515 23 HOH HOH . 
O 7 HOH B 16 516 104 HOH HOH . 
O 7 HOH B 17 517 22 HOH HOH . 
O 7 HOH B 18 518 6 HOH HOH . 
P 7 HOH D 1 501 26 HOH HOH . 
P 7 HOH D 2 502 65 HOH HOH . 
P 7 HOH D 3 503 5 HOH HOH . 
P 7 HOH D 4 504 30 HOH HOH . 
P 7 HOH D 5 505 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 9JE . . . J 6 -36.655 25.923 -19.923 1 65.45 ? C02 9JE 403 B 1 
HETATM 2 C C03 9JE . . . J 6 -37.129 26.016 -21.368 1 62.79 ? C03 9JE 403 B 1 
HETATM 3 C C04 9JE . . . J 6 -36.006 26.034 -22.377 1 56.62 ? C04 9JE 403 B 1 
HETATM 4 C C05 9JE . . . J 6 -35.527 27.471 -22.54 1 60.65 ? C05 9JE 403 B 1 
HETATM 5 C C06 9JE . . . J 6 -34.017 27.747 -22.885 1 63.81 ? C06 9JE 403 B 1 
HETATM 6 O O01 9JE . . . J 6 -37.738 26.365 -19.101 1 76.33 ? O01 9JE 403 B 1 
HETATM 7 O O07 9JE . . . J 6 -33.004 27.193 -22.05 1 64.98 ? O07 9JE 403 B 1 
#
_model_server_stats.io_time_ms              88 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           7 
#