data_6S6H # _model_server_result.job_id d9Kv_FVvWkUOUQFLi935SA _model_server_result.datetime_utc '2024-11-25 16:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6S6H # _exptl.entry_id 6S6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.4 _cell.angle_gamma 90 _cell.entry_id 6S6H _cell.length_a 127.099 _cell.length_b 40.717 _cell.length_c 94.004 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N1 DG 1 C DG 1 1_555 D N3 DC 20 D DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 1 C DG 1 1_555 D O2 DC 20 D DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 1 C DG 1 1_555 D N4 DC 20 D DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 2 C DA 2 1_555 D N3 DT 19 D DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 2 C DA 2 1_555 D O4 DT 19 D DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DT 3 C DT 3 1_555 D N1 DA 18 D DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 DT 3 C DT 3 1_555 D N6 DA 18 D DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 DG 4 C DG 4 1_555 D N3 DC 17 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N2 DG 4 C DG 4 1_555 D O2 DC 17 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O6 DG 4 C DG 4 1_555 D N4 DC 17 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 DT 5 C DT 5 1_555 D N1 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O4 DT 5 C DT 5 1_555 D N6 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N3 DT 6 C DT 6 1_555 D N1 DA 15 D DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O4 DT 6 C DT 6 1_555 D N6 DA 15 D DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N3 DT 7 C DT 7 1_555 D N1 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O4 DT 7 C DT 7 1_555 D N6 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N3 DC 8 C DC 8 1_555 D N1 DG 13 D DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N4 DC 8 C DC 8 1_555 D O6 DG 13 D DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O2 DC 8 C DC 8 1_555 D N2 DG 13 D DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N1 DA 9 C DA 9 1_555 D N3 DT 12 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N6 DA 9 C DA 9 1_555 D O4 DT 12 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N3 DC 10 C DC 10 1_555 D N1 DG 11 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N4 DC 10 C DC 10 1_555 D O6 DG 11 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O2 DC 10 C DC 10 1_555 D N2 DG 11 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N1 DG 11 C DG 11 1_555 D N3 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N2 DG 11 C DG 11 1_555 D O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O6 DG 11 C DG 11 1_555 D N4 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N3 DT 12 C DT 12 1_555 D N1 DA 9 D DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O4 DT 12 C DT 12 1_555 D N6 DA 9 D DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N1 DG 13 C DG 13 1_555 D N3 DC 8 D DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N2 DG 13 C DG 13 1_555 D O2 DC 8 D DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O6 DG 13 C DG 13 1_555 D N4 DC 8 D DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N1 DA 14 C DA 14 1_555 D N3 DT 7 D DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N6 DA 14 C DA 14 1_555 D O4 DT 7 D DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N1 DA 15 C DA 15 1_555 D N3 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N6 DA 15 C DA 15 1_555 D O4 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N1 DA 16 C DA 16 1_555 D N3 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C N6 DA 16 C DA 16 1_555 D O4 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C N3 DC 17 C DC 17 1_555 D N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 C N4 DC 17 C DC 17 1_555 D O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C O2 DC 17 C DC 17 1_555 D N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 C N1 DA 18 C DA 18 1_555 D N3 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 C N6 DA 18 C DA 18 1_555 D O4 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 C N3 DT 19 C DT 19 1_555 D N1 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 C O4 DT 19 C DT 19 1_555 D N6 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 C N3 DC 20 C DC 20 1_555 D N1 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 C N4 DC 20 C DC 20 1_555 D O6 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 C O2 DC 20 C DC 20 1_555 D N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 265 n n C1 C2 GOL sing 266 n n C1 H11 GOL sing 267 n n C1 H12 GOL sing 268 n n O1 HO1 GOL sing 269 n n C2 O2 GOL sing 270 n n C2 C3 GOL sing 271 n n C2 H2 GOL sing 272 n n O2 HO2 GOL sing 273 n n C3 O3 GOL sing 274 n n C3 H31 GOL sing 275 n n C3 H32 GOL sing 276 n n O3 HO3 GOL sing 277 n n # _atom_sites.entry_id 6S6H _atom_sites.fract_transf_matrix[1][1] 0.007868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 301 301 GOL GOL . F 3 GOL A 1 302 401 GOL GOL . G 4 HOH A 1 401 27 HOH HOH . G 4 HOH A 2 402 59 HOH HOH . G 4 HOH A 3 403 19 HOH HOH . G 4 HOH A 4 404 26 HOH HOH . G 4 HOH A 5 405 75 HOH HOH . G 4 HOH A 6 406 14 HOH HOH . G 4 HOH A 7 407 29 HOH HOH . G 4 HOH A 8 408 18 HOH HOH . G 4 HOH A 9 409 17 HOH HOH . G 4 HOH A 10 410 1 HOH HOH . G 4 HOH A 11 411 79 HOH HOH . G 4 HOH A 12 412 76 HOH HOH . G 4 HOH A 13 413 15 HOH HOH . G 4 HOH A 14 414 82 HOH HOH . G 4 HOH A 15 415 16 HOH HOH . G 4 HOH A 16 416 12 HOH HOH . G 4 HOH A 17 417 35 HOH HOH . G 4 HOH A 18 418 13 HOH HOH . G 4 HOH A 19 419 58 HOH HOH . G 4 HOH A 20 420 65 HOH HOH . H 4 HOH B 1 301 28 HOH HOH . H 4 HOH B 2 302 73 HOH HOH . H 4 HOH B 3 303 50 HOH HOH . H 4 HOH B 4 304 25 HOH HOH . H 4 HOH B 5 305 2 HOH HOH . H 4 HOH B 6 306 5 HOH HOH . H 4 HOH B 7 307 11 HOH HOH . H 4 HOH B 8 308 44 HOH HOH . H 4 HOH B 9 309 23 HOH HOH . H 4 HOH B 10 310 8 HOH HOH . H 4 HOH B 11 311 6 HOH HOH . H 4 HOH B 12 312 81 HOH HOH . H 4 HOH B 13 313 66 HOH HOH . H 4 HOH B 14 314 54 HOH HOH . H 4 HOH B 15 315 31 HOH HOH . H 4 HOH B 16 316 68 HOH HOH . I 4 HOH C 1 101 71 HOH HOH . I 4 HOH C 2 102 3 HOH HOH . I 4 HOH C 3 103 9 HOH HOH . I 4 HOH C 4 104 7 HOH HOH . I 4 HOH C 5 105 22 HOH HOH . I 4 HOH C 6 106 46 HOH HOH . I 4 HOH C 7 107 37 HOH HOH . I 4 HOH C 8 108 52 HOH HOH . I 4 HOH C 9 109 78 HOH HOH . I 4 HOH C 10 110 20 HOH HOH . I 4 HOH C 11 111 80 HOH HOH . I 4 HOH C 12 112 64 HOH HOH . I 4 HOH C 13 113 55 HOH HOH . I 4 HOH C 14 114 38 HOH HOH . I 4 HOH C 15 115 70 HOH HOH . I 4 HOH C 16 116 36 HOH HOH . I 4 HOH C 17 117 41 HOH HOH . I 4 HOH C 18 118 34 HOH HOH . I 4 HOH C 19 119 72 HOH HOH . I 4 HOH C 20 120 51 HOH HOH . J 4 HOH D 1 101 61 HOH HOH . J 4 HOH D 2 102 48 HOH HOH . J 4 HOH D 3 103 63 HOH HOH . J 4 HOH D 4 104 69 HOH HOH . J 4 HOH D 5 105 47 HOH HOH . J 4 HOH D 6 106 57 HOH HOH . J 4 HOH D 7 107 49 HOH HOH . J 4 HOH D 8 108 33 HOH HOH . J 4 HOH D 9 109 67 HOH HOH . J 4 HOH D 10 110 10 HOH HOH . J 4 HOH D 11 111 43 HOH HOH . J 4 HOH D 12 112 77 HOH HOH . J 4 HOH D 13 113 21 HOH HOH . J 4 HOH D 14 114 32 HOH HOH . J 4 HOH D 15 115 24 HOH HOH . J 4 HOH D 16 116 39 HOH HOH . J 4 HOH D 17 117 56 HOH HOH . J 4 HOH D 18 118 4 HOH HOH . J 4 HOH D 19 119 62 HOH HOH . J 4 HOH D 20 120 74 HOH HOH . J 4 HOH D 21 121 40 HOH HOH . J 4 HOH D 22 122 30 HOH HOH . J 4 HOH D 23 123 42 HOH HOH . J 4 HOH D 24 124 60 HOH HOH . J 4 HOH D 25 125 45 HOH HOH . J 4 HOH D 26 126 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 11.796 -0.603 18.283 1 55.45 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . F 3 10.764 0.378 18.292 1 53.95 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . F 3 11.289 -1.946 17.795 1 56.39 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . F 3 11.509 -2.061 16.389 1 57.08 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . F 3 11.93 -3.126 18.497 1 56.98 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . F 3 11.094 -3.66 19.522 1 57.61 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #