data_6S6V # _model_server_result.job_id 61C_Tz1vRb7goFuUItSqLw _model_server_result.datetime_utc '2025-03-05 02:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6S6V # _exptl.entry_id 6S6V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S6V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc3 A OD2 ASP 48 A ASP 48 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc4 A OD2 ASP 48 A ASP 48 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc5 A OD1 ASN 83 A ASN 83 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 A NE2 HIS 184 A HIS 184 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc7 A ND1 HIS 222 A HIS 222 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc8 A NE2 HIS 224 A HIS 224 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc9 B OD1 ASP 8 B ASP 8 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc10 B NE2 HIS 10 B HIS 10 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc11 B OD2 ASP 48 B ASP 48 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc12 B OD2 ASP 48 B ASP 48 1_555 H MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc13 B OD1 ASN 83 B ASN 83 1_555 H MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc14 B NE2 HIS 184 B HIS 184 1_555 H MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc15 B ND1 HIS 222 B HIS 222 1_555 H MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc16 B NE2 HIS 224 B HIS 224 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc17 C OG1 THR 44 C THR 44 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc18 C OE1 GLN 155 C GLN 155 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C NH2 ARG 946 C ARG 946 1_555 I O2' AGS . C AGS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale2 D OD1 ASN 12 D ASN 12 1_555 I C8 AGS . C AGS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 D NZ LYS 43 D LYS 43 1_555 I S1G AGS . C AGS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? metalc ? metalc19 D OG1 THR 44 D THR 44 1_555 L MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc20 D OE1 GLN 155 D GLN 155 1_555 L MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale4 D NH2 ARG 946 D ARG 946 1_555 K O2' AGS . D AGS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? metalc ? metalc21 I O3G AGS . C AGS 1101 1_555 L MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc22 I O2B AGS . C AGS 1101 1_555 L MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc23 J MG MG . C MG 1102 1_555 K O3G AGS . D AGS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc24 J MG MG . C MG 1102 1_555 K O2B AGS . D AGS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S6V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 501 404 MN MN . F 3 MN A 1 502 501 MN MN . G 3 MN B 1 501 402 MN MN . H 3 MN B 1 502 501 MN MN . I 4 AGS C 1 1101 1101 AGS AGS . J 5 MG C 1 1102 2 MG MG . K 4 AGS D 1 1101 1101 AGS AGS . L 5 MG D 1 1102 1 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 174.9 _atom_site.Cartn_y 172.914 _atom_site.Cartn_z 149.715 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 62.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #