data_6S6W # _model_server_result.job_id WtH-UoCYXQ5VTgXmxUWc8w _model_server_result.datetime_utc '2024-12-27 01:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6S6W # _exptl.entry_id 6S6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S6W _cell.length_a 81.557 _cell.length_b 89.357 _cell.length_c 159.037 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 81.557 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 185 A LYS 204 1_555 C O2B NAD . A NAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 C O3D NAD . A NAD 601 3_555 B NZ LYS 28 B LYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 288 n n PA O2A NAD sing 289 n n PA O5B NAD sing 290 n n PA O3 NAD sing 291 n n O2A HOA2 NAD sing 292 n n O5B C5B NAD sing 293 n n C5B C4B NAD sing 294 n n C5B H51A NAD sing 295 n n C5B H52A NAD sing 296 n n C4B O4B NAD sing 297 n n C4B C3B NAD sing 298 n n C4B H4B NAD sing 299 n n O4B C1B NAD sing 300 n n C3B O3B NAD sing 301 n n C3B C2B NAD sing 302 n n C3B H3B NAD sing 303 n n O3B HO3A NAD sing 304 n n C2B O2B NAD sing 305 n n C2B C1B NAD sing 306 n n C2B H2B NAD sing 307 n n O2B HO2A NAD sing 308 n n C1B N9A NAD sing 309 n n C1B H1B NAD sing 310 n n N9A C8A NAD sing 311 n y N9A C4A NAD sing 312 n y C8A N7A NAD doub 313 n y C8A H8A NAD sing 314 n n N7A C5A NAD sing 315 n y C5A C6A NAD sing 316 n y C5A C4A NAD doub 317 n y C6A N6A NAD sing 318 n n C6A N1A NAD doub 319 n y N6A H61A NAD sing 320 n n N6A H62A NAD sing 321 n n N1A C2A NAD sing 322 n y C2A N3A NAD doub 323 n y C2A H2A NAD sing 324 n n N3A C4A NAD sing 325 n y O3 PN NAD sing 326 n n PN O1N NAD doub 327 n n PN O2N NAD sing 328 n n PN O5D NAD sing 329 n n O5D C5D NAD sing 330 n n C5D C4D NAD sing 331 n n C5D H51N NAD sing 332 n n C5D H52N NAD sing 333 n n C4D O4D NAD sing 334 n n C4D C3D NAD sing 335 n n C4D H4D NAD sing 336 n n O4D C1D NAD sing 337 n n C3D O3D NAD sing 338 n n C3D C2D NAD sing 339 n n C3D H3D NAD sing 340 n n O3D HO3N NAD sing 341 n n C2D O2D NAD sing 342 n n C2D C1D NAD sing 343 n n C2D H2D NAD sing 344 n n O2D HO2N NAD sing 345 n n C1D N1N NAD sing 346 n n C1D H1D NAD sing 347 n n N1N C2N NAD sing 348 n y N1N C6N NAD doub 349 n y C2N C3N NAD doub 350 n y C2N H2N NAD sing 351 n n C3N C7N NAD sing 352 n n C3N C4N NAD sing 353 n y C7N O7N NAD doub 354 n n C7N N7N NAD sing 355 n n N7N H71N NAD sing 356 n n N7N H72N NAD sing 357 n n C4N C5N NAD doub 358 n y C4N H4N NAD sing 359 n n C5N C6N NAD sing 360 n y C5N H5N NAD sing 361 n n C6N H6N NAD sing 362 n n # _atom_sites.entry_id 6S6W _atom_sites.fract_transf_matrix[1][1] 0.012261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 601 NAD NAD . D 3 GOL A 1 602 801 GOL GOL . E 4 KXT A 1 603 901 KXT GA1 . F 3 GOL A 1 604 801 GOL GOL . G 2 NAD B 1 601 601 NAD NAD . H 5 HOH A 1 701 5 HOH HOH . H 5 HOH A 2 702 3 HOH HOH . H 5 HOH A 3 703 39 HOH HOH . H 5 HOH A 4 704 19 HOH HOH . H 5 HOH A 5 705 9 HOH HOH . I 5 HOH B 1 701 40 HOH HOH . I 5 HOH B 2 702 8 HOH HOH . I 5 HOH B 3 703 2 HOH HOH . I 5 HOH B 4 704 6 HOH HOH . I 5 HOH B 5 705 1 HOH HOH . I 5 HOH B 6 706 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 29.838 3.185 32.833 1 86.01 ? PA NAD 601 A 1 HETATM 2 O O1A NAD . . . C 2 31.298 2.744 32.791 1 74.16 ? O1A NAD 601 A 1 HETATM 3 O O2A NAD . . . C 2 29.455 3.721 34.21 1 91.62 -1 O2A NAD 601 A 1 HETATM 4 O O5B NAD . . . C 2 28.847 1.879 32.432 1 67.08 ? O5B NAD 601 A 1 HETATM 5 C C5B NAD . . . C 2 28.906 1.462 31.092 1 57.43 ? C5B NAD 601 A 1 HETATM 6 C C4B NAD . . . C 2 28.377 -0.003 30.991 1 61.47 ? C4B NAD 601 A 1 HETATM 7 O O4B NAD . . . C 2 29.218 -0.809 31.593 1 56.62 ? O4B NAD 601 A 1 HETATM 8 C C3B NAD . . . C 2 27.048 -0.119 31.715 1 61.92 ? C3B NAD 601 A 1 HETATM 9 O O3B NAD . . . C 2 26.142 -0.706 30.898 1 69.49 ? O3B NAD 601 A 1 HETATM 10 C C2B NAD . . . C 2 27.308 -1.016 32.964 1 55.02 ? C2B NAD 601 A 1 HETATM 11 O O2B NAD . . . C 2 26.167 -2.025 33.112 1 63.16 ? O2B NAD 601 A 1 HETATM 12 C C1B NAD . . . C 2 28.435 -1.611 32.752 1 57.1 ? C1B NAD 601 A 1 HETATM 13 N N9A NAD . . . C 2 29.291 -1.584 33.936 1 62.5 ? N9A NAD 601 A 1 HETATM 14 C C8A NAD . . . C 2 29.331 -0.616 34.874 1 65.42 ? C8A NAD 601 A 1 HETATM 15 N N7A NAD . . . C 2 30.256 -0.96 35.786 1 60.02 ? N7A NAD 601 A 1 HETATM 16 C C5A NAD . . . C 2 30.792 -2.131 35.41 1 61.21 ? C5A NAD 601 A 1 HETATM 17 C C6A NAD . . . C 2 31.774 -2.928 35.977 1 61.67 ? C6A NAD 601 A 1 HETATM 18 N N6A NAD . . . C 2 32.591 -2.767 37.214 1 61.14 ? N6A NAD 601 A 1 HETATM 19 N N1A NAD . . . C 2 32.129 -4.073 35.384 1 55.82 ? N1A NAD 601 A 1 HETATM 20 C C2A NAD . . . C 2 31.529 -4.452 34.233 1 50.85 ? C2A NAD 601 A 1 HETATM 21 N N3A NAD . . . C 2 30.556 -3.669 33.667 1 53.68 ? N3A NAD 601 A 1 HETATM 22 C C4A NAD . . . C 2 30.197 -2.514 34.262 1 60.4 ? C4A NAD 601 A 1 HETATM 23 O O3 NAD . . . C 2 29.566 4.36 31.686 1 72.55 ? O3 NAD 601 A 1 HETATM 24 P PN NAD . . . C 2 28.069 5.022 31.582 1 98.82 ? PN NAD 601 A 1 HETATM 25 O O1N NAD . . . C 2 27.039 3.902 31.524 1 76.32 ? O1N NAD 601 A 1 HETATM 26 O O2N NAD . . . C 2 27.971 5.916 30.382 1 92.62 -1 O2N NAD 601 A 1 HETATM 27 O O5D NAD . . . C 2 27.859 5.923 32.946 1 94.7 ? O5D NAD 601 A 1 HETATM 28 C C5D NAD . . . C 2 28.908 6.818 33.268 1 92.26 ? C5D NAD 601 A 1 HETATM 29 C C4D NAD . . . C 2 29.492 6.457 34.725 1 103.83 ? C4D NAD 601 A 1 HETATM 30 O O4D NAD . . . C 2 30.446 7.307 35.03 1 114.45 ? O4D NAD 601 A 1 HETATM 31 C C3D NAD . . . C 2 28.407 6.632 35.782 1 117.3 ? C3D NAD 601 A 1 HETATM 32 O O3D NAD . . . C 2 28.516 5.702 36.712 1 125.82 ? O3D NAD 601 A 1 HETATM 33 C C2D NAD . . . C 2 28.764 8.015 36.399 1 127.93 ? C2D NAD 601 A 1 HETATM 34 O O2D NAD . . . C 2 28.16 8.136 37.773 1 117.51 ? O2D NAD 601 A 1 HETATM 35 C C1D NAD . . . C 2 30.037 7.921 36.475 1 132.05 ? C1D NAD 601 A 1 HETATM 36 N N1N NAD . . . C 2 30.651 9.229 36.753 1 136.81 ? N1N NAD 601 A 1 HETATM 37 C C2N NAD . . . C 2 30.926 9.555 38.055 1 130.37 ? C2N NAD 601 A 1 HETATM 38 C C3N NAD . . . C 2 31.497 10.789 38.373 1 133.36 ? C3N NAD 601 A 1 HETATM 39 C C7N NAD . . . C 2 31.787 11.118 39.829 1 128.27 ? C7N NAD 601 A 1 HETATM 40 O O7N NAD . . . C 2 32.084 10.238 40.598 1 118.13 ? O7N NAD 601 A 1 HETATM 41 N N7N NAD . . . C 2 31.689 12.497 40.297 1 128.15 ? N7N NAD 601 A 1 HETATM 42 C C4N NAD . . . C 2 31.788 11.671 37.388 1 133.36 ? C4N NAD 601 A 1 HETATM 43 C C5N NAD . . . C 2 31.516 11.346 36.084 1 133.06 ? C5N NAD 601 A 1 HETATM 44 C C6N NAD . . . C 2 30.939 10.105 35.767 1 133.39 ? C6N NAD 601 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #