data_6S6W # _model_server_result.job_id pvIJ2_65tKhLc0993F8YgA _model_server_result.datetime_utc '2025-01-14 02:20:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 6S6W # _exptl.entry_id 6S6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S6W _cell.length_a 81.557 _cell.length_b 89.357 _cell.length_c 159.037 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 81.557 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 185 A LYS 204 1_555 C O2B NAD . A NAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 C O3D NAD . A NAD 601 3_555 B NZ LYS 28 B LYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 288 n n PA O2A NAD sing 289 n n PA O5B NAD sing 290 n n PA O3 NAD sing 291 n n O2A HOA2 NAD sing 292 n n O5B C5B NAD sing 293 n n C5B C4B NAD sing 294 n n C5B H51A NAD sing 295 n n C5B H52A NAD sing 296 n n C4B O4B NAD sing 297 n n C4B C3B NAD sing 298 n n C4B H4B NAD sing 299 n n O4B C1B NAD sing 300 n n C3B O3B NAD sing 301 n n C3B C2B NAD sing 302 n n C3B H3B NAD sing 303 n n O3B HO3A NAD sing 304 n n C2B O2B NAD sing 305 n n C2B C1B NAD sing 306 n n C2B H2B NAD sing 307 n n O2B HO2A NAD sing 308 n n C1B N9A NAD sing 309 n n C1B H1B NAD sing 310 n n N9A C8A NAD sing 311 n y N9A C4A NAD sing 312 n y C8A N7A NAD doub 313 n y C8A H8A NAD sing 314 n n N7A C5A NAD sing 315 n y C5A C6A NAD sing 316 n y C5A C4A NAD doub 317 n y C6A N6A NAD sing 318 n n C6A N1A NAD doub 319 n y N6A H61A NAD sing 320 n n N6A H62A NAD sing 321 n n N1A C2A NAD sing 322 n y C2A N3A NAD doub 323 n y C2A H2A NAD sing 324 n n N3A C4A NAD sing 325 n y O3 PN NAD sing 326 n n PN O1N NAD doub 327 n n PN O2N NAD sing 328 n n PN O5D NAD sing 329 n n O5D C5D NAD sing 330 n n C5D C4D NAD sing 331 n n C5D H51N NAD sing 332 n n C5D H52N NAD sing 333 n n C4D O4D NAD sing 334 n n C4D C3D NAD sing 335 n n C4D H4D NAD sing 336 n n O4D C1D NAD sing 337 n n C3D O3D NAD sing 338 n n C3D C2D NAD sing 339 n n C3D H3D NAD sing 340 n n O3D HO3N NAD sing 341 n n C2D O2D NAD sing 342 n n C2D C1D NAD sing 343 n n C2D H2D NAD sing 344 n n O2D HO2N NAD sing 345 n n C1D N1N NAD sing 346 n n C1D H1D NAD sing 347 n n N1N C2N NAD sing 348 n y N1N C6N NAD doub 349 n y C2N C3N NAD doub 350 n y C2N H2N NAD sing 351 n n C3N C7N NAD sing 352 n n C3N C4N NAD sing 353 n y C7N O7N NAD doub 354 n n C7N N7N NAD sing 355 n n N7N H71N NAD sing 356 n n N7N H72N NAD sing 357 n n C4N C5N NAD doub 358 n y C4N H4N NAD sing 359 n n C5N C6N NAD sing 360 n y C5N H5N NAD sing 361 n n C6N H6N NAD sing 362 n n # _atom_sites.entry_id 6S6W _atom_sites.fract_transf_matrix[1][1] 0.012261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 601 NAD NAD . D 3 GOL A 1 602 801 GOL GOL . E 4 KXT A 1 603 901 KXT GA1 . F 3 GOL A 1 604 801 GOL GOL . G 2 NAD B 1 601 601 NAD NAD . H 5 HOH A 1 701 5 HOH HOH . H 5 HOH A 2 702 3 HOH HOH . H 5 HOH A 3 703 39 HOH HOH . H 5 HOH A 4 704 19 HOH HOH . H 5 HOH A 5 705 9 HOH HOH . I 5 HOH B 1 701 40 HOH HOH . I 5 HOH B 2 702 8 HOH HOH . I 5 HOH B 3 703 2 HOH HOH . I 5 HOH B 4 704 6 HOH HOH . I 5 HOH B 5 705 1 HOH HOH . I 5 HOH B 6 706 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 57.896 -16.865 30.034 1 78.02 ? PA NAD 601 B 1 HETATM 2 O O1A NAD . . . G 2 56.466 -16.362 30.223 1 72.95 ? O1A NAD 601 B 1 HETATM 3 O O2A NAD . . . G 2 58.535 -17.207 31.378 1 89.82 ? O2A NAD 601 B 1 HETATM 4 O O5B NAD . . . G 2 58.816 -15.671 29.27 1 71.28 ? O5B NAD 601 B 1 HETATM 5 C C5B NAD . . . G 2 58.245 -15.045 28.15 1 71.61 ? C5B NAD 601 B 1 HETATM 6 C C4B NAD . . . G 2 58.846 -13.611 28.022 1 69.7 ? C4B NAD 601 B 1 HETATM 7 O O4B NAD . . . G 2 58.16 -12.791 28.784 1 68.33 ? O4B NAD 601 B 1 HETATM 8 C C3B NAD . . . G 2 60.269 -13.616 28.55 1 64.96 ? C3B NAD 601 B 1 HETATM 9 O O3B NAD . . . G 2 61.083 -12.924 27.716 1 66.73 ? O3B NAD 601 B 1 HETATM 10 C C2B NAD . . . G 2 60.189 -12.915 29.939 1 65.24 ? C2B NAD 601 B 1 HETATM 11 O O2B NAD . . . G 2 61.456 -12.109 30.175 1 67.01 ? O2B NAD 601 B 1 HETATM 12 C C1B NAD . . . G 2 59.157 -12.146 29.875 1 67.35 ? C1B NAD 601 B 1 HETATM 13 N N9A NAD . . . G 2 58.462 -12.099 31.159 1 72.33 ? N9A NAD 601 B 1 HETATM 14 C C8A NAD . . . G 2 58.428 -13.084 32.079 1 75.07 ? C8A NAD 601 B 1 HETATM 15 N N7A NAD . . . G 2 57.685 -12.662 33.115 1 77.12 ? N7A NAD 601 B 1 HETATM 16 C C5A NAD . . . G 2 57.256 -11.421 32.838 1 71.91 ? C5A NAD 601 B 1 HETATM 17 C C6A NAD . . . G 2 56.467 -10.532 33.549 1 69.6 ? C6A NAD 601 B 1 HETATM 18 N N6A NAD . . . G 2 55.808 -10.631 34.883 1 75.92 ? N6A NAD 601 B 1 HETATM 19 N N1A NAD . . . G 2 56.183 -9.331 33.032 1 67.29 ? N1A NAD 601 B 1 HETATM 20 C C2A NAD . . . G 2 56.665 -8.988 31.817 1 71.28 ? C2A NAD 601 B 1 HETATM 21 N N3A NAD . . . G 2 57.446 -9.864 31.107 1 69.22 ? N3A NAD 601 B 1 HETATM 22 C C4A NAD . . . G 2 57.735 -11.074 31.625 1 70.94 ? C4A NAD 601 B 1 HETATM 23 O O3 NAD . . . G 2 57.892 -18.222 29.064 1 83.59 ? O3 NAD 601 B 1 HETATM 24 P PN NAD . . . G 2 59.146 -19.285 29.049 1 102.6 ? PN NAD 601 B 1 HETATM 25 O O1N NAD . . . G 2 60.31 -18.663 28.298 1 88.48 ? O1N NAD 601 B 1 HETATM 26 O O2N NAD . . . G 2 58.721 -20.568 28.401 1 114.33 ? O2N NAD 601 B 1 HETATM 27 O O5D NAD . . . G 2 59.585 -19.588 30.608 1 103.19 ? O5D NAD 601 B 1 HETATM 28 C C5D NAD . . . G 2 58.798 -20.505 31.344 1 114.09 ? C5D NAD 601 B 1 HETATM 29 C C4D NAD . . . G 2 59.475 -20.634 32.796 1 136.58 ? C4D NAD 601 B 1 HETATM 30 O O4D NAD . . . G 2 58.565 -20.702 33.728 1 141.98 ? O4D NAD 601 B 1 HETATM 31 C C3D NAD . . . G 2 60.254 -21.936 32.932 1 142.1 ? C3D NAD 601 B 1 HETATM 32 O O3D NAD . . . G 2 61.543 -21.713 32.766 1 136 ? O3D NAD 601 B 1 HETATM 33 C C2D NAD . . . G 2 59.962 -22.401 34.398 1 143.39 ? C2D NAD 601 B 1 HETATM 34 O O2D NAD . . . G 2 61.258 -22.706 35.114 1 136.43 ? O2D NAD 601 B 1 HETATM 35 C C1D NAD . . . G 2 59.387 -21.389 34.939 1 143.47 ? C1D NAD 601 B 1 HETATM 36 N N1N NAD . . . G 2 58.476 -21.775 36.021 1 142.96 ? N1N NAD 601 B 1 HETATM 37 C C2N NAD . . . G 2 58.596 -21.153 37.235 1 142.59 ? C2N NAD 601 B 1 HETATM 38 C C3N NAD . . . G 2 57.741 -21.502 38.283 1 142.04 ? C3N NAD 601 B 1 HETATM 39 C C7N NAD . . . G 2 57.881 -20.802 39.622 1 138.99 ? C7N NAD 601 B 1 HETATM 40 O O7N NAD . . . G 2 57.248 -21.183 40.573 1 138.86 ? O7N NAD 601 B 1 HETATM 41 N N7N NAD . . . G 2 58.775 -19.653 39.742 1 131.65 ? N7N NAD 601 B 1 HETATM 42 C C4N NAD . . . G 2 56.791 -22.445 38.1 1 139 ? C4N NAD 601 B 1 HETATM 43 C C5N NAD . . . G 2 56.67 -23.063 36.884 1 136.76 ? C5N NAD 601 B 1 HETATM 44 C C6N NAD . . . G 2 57.53 -22.716 35.831 1 141.48 ? C6N NAD 601 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 532 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 44 #