data_6S6W # _model_server_result.job_id dxmcKPHfZ6uQ4Jr6NJTPmA _model_server_result.datetime_utc '2024-12-27 01:12:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 6S6W # _exptl.entry_id 6S6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S6W _cell.length_a 81.557 _cell.length_b 89.357 _cell.length_c 159.037 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 81.557 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 185 A LYS 204 1_555 C O2B NAD . A NAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 C O3D NAD . A NAD 601 3_555 B NZ LYS 28 B LYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6S6W _atom_sites.fract_transf_matrix[1][1] 0.012261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 601 NAD NAD . D 3 GOL A 1 602 801 GOL GOL . E 4 KXT A 1 603 901 KXT GA1 . F 3 GOL A 1 604 801 GOL GOL . G 2 NAD B 1 601 601 NAD NAD . H 5 HOH A 1 701 5 HOH HOH . H 5 HOH A 2 702 3 HOH HOH . H 5 HOH A 3 703 39 HOH HOH . H 5 HOH A 4 704 19 HOH HOH . H 5 HOH A 5 705 9 HOH HOH . I 5 HOH B 1 701 40 HOH HOH . I 5 HOH B 2 702 8 HOH HOH . I 5 HOH B 3 703 2 HOH HOH . I 5 HOH B 4 704 6 HOH HOH . I 5 HOH B 5 705 1 HOH HOH . I 5 HOH B 6 706 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 42.652 -5.902 23.755 1 67.14 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . F 3 42.632 -7.267 23.408 1 61.18 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . F 3 43.372 -5.121 22.63 1 76.23 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . F 3 44.719 -5.417 22.574 1 72.07 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . F 3 42.613 -5.504 21.352 1 81.95 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . F 3 43.436 -5.156 20.279 1 67.73 ? O3 GOL 604 A 1 HETATM 7 H H11 GOL . . . F 3 43.114 -5.743 24.593 1 80.03 ? H11 GOL 604 A 1 HETATM 8 H H12 GOL . . . F 3 41.76 -5.538 23.87 1 80.03 ? H12 GOL 604 A 1 HETATM 9 H HO1 GOL . . . F 3 41.933 -7.596 23.762 1 72.87 ? HO1 GOL 604 A 1 HETATM 10 H H2 GOL . . . F 3 43.328 -4.164 22.781 1 90.93 ? H2 GOL 604 A 1 HETATM 11 H HO2 GOL . . . F 3 45.01 -5.168 21.815 1 85.95 ? HO2 GOL 604 A 1 HETATM 12 H H31 GOL . . . F 3 41.757 -5.048 21.345 1 97.8 ? H31 GOL 604 A 1 HETATM 13 H H32 GOL . . . F 3 42.4 -6.45 21.384 1 97.8 ? H32 GOL 604 A 1 HETATM 14 H HO3 GOL . . . F 3 42.926 -4.873 19.661 1 80.74 ? HO3 GOL 604 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 455 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 14 #