data_6S7D # _model_server_result.job_id CIbnycdoXrKUjYH3Z6nE9w _model_server_result.datetime_utc '2024-12-26 23:44:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6S7D # _exptl.entry_id 6S7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6S7D _cell.length_a 38.642 _cell.length_b 38.642 _cell.length_c 79.307 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 1 A DG 1 1_555 A P XCI 2 A XCI 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.653 ? covale ? covale2 A O3' XCI 2 A XCI 2 1_555 A P DC 3 A DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale3 B O3' DG 1 B DG 1 1_555 B P XCI 2 B XCI 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale4 B O3' XCI 2 B XCI 2 1_555 B P DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? metalc ? metalc1 A O6 DG 7 A DG 7 1_555 C BA BA . A BA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc2 A O6 DG 8 A DG 8 1_555 C BA BA . A BA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc3 C BA BA . A BA 101 1_555 I O HOH . A HOH 210 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.806 ? metalc ? metalc4 C BA BA . A BA 101 1_555 I O HOH . A HOH 210 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.923 ? metalc ? metalc5 C BA BA . A BA 101 1_555 I O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc6 C BA BA . A BA 101 1_555 J O HOH . B HOH 236 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc7 C BA BA . A BA 101 1_555 J O HOH . B HOH 237 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc8 D NA NA . A NA 102 1_555 I O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc9 D NA NA . A NA 102 1_555 I O HOH . A HOH 210 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.132 ? metalc ? metalc10 D NA NA . A NA 102 1_555 I O HOH . A HOH 210 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.431 ? metalc ? metalc11 I O HOH . A HOH 203 1_555 G BA BA . B BA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc12 B O6 DG 7 B DG 7 1_555 G BA BA . B BA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc13 B O6 DG 8 B DG 8 1_555 G BA BA . B BA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc14 G BA BA . B BA 102 1_555 J O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc15 G BA BA . B BA 102 1_555 J O HOH . B HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc16 G BA BA . B BA 102 1_555 J O HOH . B HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc17 G BA BA . B BA 102 1_555 J O HOH . B HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc18 H NA NA . B NA 103 1_555 J O HOH . B HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc19 H NA NA . B NA 103 1_555 J O HOH . B HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 10 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 10 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 10 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 3 A DC 3 1_555 B N1 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 3 A DC 3 1_555 B O6 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 3 A DC 3 1_555 B N2 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 4 A DC 4 1_555 B N1 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 4 A DC 4 1_555 B O6 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 4 A DC 4 1_555 B N2 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 5 A DC 5 1_555 B N1 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 5 A DC 5 1_555 B O6 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 5 A DC 5 1_555 B N2 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 7 A DG 7 1_555 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 7 A DG 7 1_555 B O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 7 A DG 7 1_555 B N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 8 A DG 8 1_555 B N3 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 8 A DG 8 1_555 B O2 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 8 A DG 8 1_555 B N4 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DG MISPAIR' hydrog22 A N6 DA 9 A DA 9 1_555 B O6 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 10 A DC 10 1_555 B N1 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 10 A DC 10 1_555 B O6 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 10 A DC 10 1_555 B N2 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S7D _atom_sites.fract_transf_matrix[1][1] 0.025879 _atom_sites.fract_transf_matrix[1][2] 0.014941 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BA A 1 101 1 BA BA . D 3 NA A 1 102 3 NA NA . E 4 CL A 1 103 5 CL CL . F 5 SPM B 1 101 1 SPM SPM . G 2 BA B 1 102 2 BA BA . H 3 NA B 1 103 4 NA NA . I 6 HOH A 1 201 25 HOH HOH . I 6 HOH A 2 202 28 HOH HOH . I 6 HOH A 3 203 45 HOH HOH . I 6 HOH A 4 204 47 HOH HOH . I 6 HOH A 5 205 37 HOH HOH . I 6 HOH A 6 206 5 HOH HOH . I 6 HOH A 7 207 19 HOH HOH . I 6 HOH A 8 208 12 HOH HOH . I 6 HOH A 9 209 30 HOH HOH . I 6 HOH A 10 210 6 HOH HOH . I 6 HOH A 11 211 15 HOH HOH . I 6 HOH A 12 212 60 HOH HOH . I 6 HOH A 13 213 49 HOH HOH . I 6 HOH A 14 214 36 HOH HOH . I 6 HOH A 15 215 56 HOH HOH . I 6 HOH A 16 216 39 HOH HOH . I 6 HOH A 17 217 21 HOH HOH . I 6 HOH A 18 218 18 HOH HOH . I 6 HOH A 19 219 3 HOH HOH . I 6 HOH A 20 220 2 HOH HOH . I 6 HOH A 21 221 41 HOH HOH . I 6 HOH A 22 222 24 HOH HOH . I 6 HOH A 23 223 13 HOH HOH . J 6 HOH B 1 201 9 HOH HOH . J 6 HOH B 2 202 11 HOH HOH . J 6 HOH B 3 203 17 HOH HOH . J 6 HOH B 4 204 35 HOH HOH . J 6 HOH B 5 205 1 HOH HOH . J 6 HOH B 6 206 34 HOH HOH . J 6 HOH B 7 207 16 HOH HOH . J 6 HOH B 8 208 29 HOH HOH . J 6 HOH B 9 209 26 HOH HOH . J 6 HOH B 10 210 64 HOH HOH . J 6 HOH B 11 211 53 HOH HOH . J 6 HOH B 12 212 54 HOH HOH . J 6 HOH B 13 213 46 HOH HOH . J 6 HOH B 14 214 44 HOH HOH . J 6 HOH B 15 215 31 HOH HOH . J 6 HOH B 16 216 63 HOH HOH . J 6 HOH B 17 217 33 HOH HOH . J 6 HOH B 18 218 58 HOH HOH . J 6 HOH B 19 219 52 HOH HOH . J 6 HOH B 20 220 55 HOH HOH . J 6 HOH B 21 221 7 HOH HOH . J 6 HOH B 22 222 50 HOH HOH . J 6 HOH B 23 223 59 HOH HOH . J 6 HOH B 24 224 20 HOH HOH . J 6 HOH B 25 225 38 HOH HOH . J 6 HOH B 26 226 62 HOH HOH . J 6 HOH B 27 227 51 HOH HOH . J 6 HOH B 28 228 43 HOH HOH . J 6 HOH B 29 229 48 HOH HOH . J 6 HOH B 30 230 4 HOH HOH . J 6 HOH B 31 231 61 HOH HOH . J 6 HOH B 32 232 32 HOH HOH . J 6 HOH B 33 233 57 HOH HOH . J 6 HOH B 34 234 22 HOH HOH . J 6 HOH B 35 235 27 HOH HOH . J 6 HOH B 36 236 10 HOH HOH . J 6 HOH B 37 237 42 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BA _atom_site.label_atom_id BA _atom_site.label_comp_id BA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.097 _atom_site.Cartn_y -3.604 _atom_site.Cartn_z 2.116 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BA _atom_site.auth_comp_id BA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 507 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #