data_6S7O # _model_server_result.job_id 4-YScG2EB8gWQ_G_u7d3UQ _model_server_result.datetime_utc '2024-11-05 00:07:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":812}' # _entry.id 6S7O # _exptl.entry_id 6S7O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 610.776 _entity.id 12 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[(1~{S},2~{R},3~{R},4~{R},5'~{S},6~{S},7~{R},8~{S},9~{R},12~{R},13~{R},15~{S},16~{S},18~{R})-5',7,9,13-tetramethyl-3,15-bis(oxidanyl)spiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane-6,2'-oxane]-16-yl]oxy-oxane-3,4,5-triol" _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S7O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 L N N ? 12 M N N ? 12 N N N ? 12 V N N ? 12 W N N ? 12 Z N N ? 12 AA N N ? 12 BA N N ? 12 DA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 9 oligosaccharide 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 9 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 9 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 10 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 10 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 10 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 10 6 5 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 10 7 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 10 8 7 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 11 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 11 4 3 MAN BMA C1 O1 . O3 HO3 . sing 13 ? 11 5 4 MAN MAN C1 O1 . O2 HO2 . sing 14 ? 11 6 3 MAN BMA C1 O1 . O6 HO6 . sing 15 ? 11 7 6 MAN MAN C1 O1 . O3 HO3 . sing 16 ? 11 8 6 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 9 n I NAG 1 I 1 NAG A 715 NAG 9 n I NAG 2 I 2 NAG A 716 NAG 9 n I BMA 3 I 3 BMA A 717 BMA 10 n J NAG 1 J 1 NAG A 718 NAG 10 n J NAG 2 J 2 NAG A 719 NAG 10 n J BMA 3 J 3 BMA A 720 BMA 10 n J MAN 4 J 4 MAN A 721 MAN 10 n J MAN 5 J 5 MAN A 722 MAN 10 n J MAN 6 J 6 MAN A 724 MAN 10 n J MAN 7 J 7 MAN A 723 MAN 10 n J MAN 8 J 8 MAN A 725 MAN 11 n K NAG 1 K 1 NAG E 595 NAG 11 n K NAG 2 K 2 NAG E 596 NAG 11 n K BMA 3 K 3 BMA E 597 BMA 11 n K MAN 4 K 4 MAN E 598 MAN 11 n K MAN 5 K 5 MAN E 602 MAN 11 n K MAN 6 K 6 MAN E 599 MAN 11 n K MAN 7 K 7 MAN E 600 MAN 11 n K MAN 8 K 8 MAN E 601 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 548 A ASN 548 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 O C2D EGY . A EGY 815 1_555 S C3B EGY . C EGY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale3 E ND2 ASN 299 E ASN 299 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale5 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale6 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale7 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale8 J O3 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale9 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 J O2 MAN . J MAN 4 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 J O2 MAN . J MAN 5 1_555 J C1 MAN . J MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale12 J O6 MAN . J MAN 7 1_555 J C1 MAN . J MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale13 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale15 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale16 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale17 K O2 MAN . K MAN 4 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale18 K O3 MAN . K MAN 6 1_555 K C1 MAN . K MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale19 K O6 MAN . K MAN 6 1_555 K C1 MAN . K MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? metalc ? metalc1 E OE2 GLU 438 E GLU 438 1_555 Y MG MG . E MG 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C33 H54 O10' _chem_comp.formula_weight 610.776 _chem_comp.id KZB _chem_comp.mon_nstd_flag . _chem_comp.name "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[(1~{S},2~{R},3~{R},4~{R},5'~{S},6~{S},7~{R},8~{S},9~{R},12~{R},13~{R},15~{S},16~{S},18~{R})-5',7,9,13-tetramethyl-3,15-bis(oxidanyl)spiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane-6,2'-oxane]-16-yl]oxy-oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S7O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 KZB A 1 812 802 KZB LIG . M 12 KZB A 1 813 803 KZB LIG . N 12 KZB A 1 814 805 KZB LIG . O 13 EGY A 1 815 3 EGY EGY . P 13 EGY A 1 816 7 EGY EGY . Q 14 MG A 1 817 901 MG MG . R 15 KZE A 1 818 801 KZE DP . S 13 EGY C 1 101 4 EGY EGY . T 13 EGY C 1 102 6 EGY EGY . U 13 EGY D 1 701 701 EGY EGY . V 12 KZB E 1 709 804 KZB LIG . W 12 KZB E 1 710 806 KZB LIG . X 13 EGY E 1 711 5 EGY EGY . Y 14 MG E 1 712 902 MG MG . Z 12 KZB F 1 701 808 KZB LIG . AA 12 KZB F 1 702 809 KZB LIG . BA 12 KZB F 1 703 810 KZB LIG . CA 13 EGY F 1 704 1 EGY EGY . DA 12 KZB G 1 501 807 KZB LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KZB . . . L 12 143.041 145.57 171.744 1 22.3 ? C10 KZB 812 A 1 HETATM 2 C C13 KZB . . . L 12 142.129 139.806 166.539 1 22.3 ? C13 KZB 812 A 1 HETATM 3 C C15 KZB . . . L 12 140.782 139.117 166.305 1 22.3 ? C15 KZB 812 A 1 HETATM 4 C C17 KZB . . . L 12 141.353 137.629 164.333 1 22.3 ? C17 KZB 812 A 1 HETATM 5 C C20 KZB . . . L 12 138.986 136.162 161.627 1 22.3 ? C20 KZB 812 A 1 HETATM 6 C C21 KZB . . . L 12 137.54 135.655 161.704 1 22.3 ? C21 KZB 812 A 1 HETATM 7 C C26 KZB . . . L 12 133.219 134.564 157.805 1 22.3 ? C26 KZB 812 A 1 HETATM 8 C C28 KZB . . . L 12 134.096 132.623 159.109 1 22.3 ? C28 KZB 812 A 1 HETATM 9 C C01 KZB . . . L 12 139.663 141.13 170.45 1 22.3 ? C01 KZB 812 A 1 HETATM 10 C C02 KZB . . . L 12 140.25 141.596 169.132 1 22.3 ? C02 KZB 812 A 1 HETATM 11 C C03 KZB . . . L 12 140.527 140.498 168.126 1 22.3 ? C03 KZB 812 A 1 HETATM 12 C C04 KZB . . . L 12 141.784 141.004 167.433 1 22.3 ? C04 KZB 812 A 1 HETATM 13 C C06 KZB . . . L 12 141.612 142.272 169.324 1 22.3 ? C06 KZB 812 A 1 HETATM 14 C C07 KZB . . . L 12 141.535 143.697 168.787 1 22.3 ? C07 KZB 812 A 1 HETATM 15 C C08 KZB . . . L 12 142.495 144.658 169.497 1 22.3 ? C08 KZB 812 A 1 HETATM 16 C C09 KZB . . . L 12 142.267 144.494 170.99 1 22.3 ? C09 KZB 812 A 1 HETATM 17 C C11 KZB . . . L 12 142.799 143.105 171.317 1 22.3 ? C11 KZB 812 A 1 HETATM 18 C C16 KZB . . . L 12 140.38 138.687 164.895 1 22.3 ? C16 KZB 812 A 1 HETATM 19 C C18 KZB . . . L 12 140.89 137.198 162.934 1 22.3 ? C18 KZB 812 A 1 HETATM 20 C C19 KZB . . . L 12 139.47 136.64 162.996 1 22.3 ? C19 KZB 812 A 1 HETATM 21 C C23 KZB . . . L 12 135.963 134.437 160.313 1 22.3 ? C23 KZB 812 A 1 HETATM 22 C C25 KZB . . . L 12 133.939 134.147 159.088 1 22.3 ? C25 KZB 812 A 1 HETATM 23 C C72 KZB . . . L 12 134.927 132.199 160.325 1 22.3 ? C72 KZB 812 A 1 HETATM 24 C C74 KZB . . . L 12 136.269 132.936 160.31 1 22.3 ? C74 KZB 812 A 1 HETATM 25 C C76 KZB . . . L 12 136.647 136.772 162.256 1 22.3 ? C76 KZB 812 A 1 HETATM 26 C C78 KZB . . . L 12 137.121 137.135 163.652 1 22.3 ? C78 KZB 812 A 1 HETATM 27 C C79 KZB . . . L 12 138.534 137.698 163.574 1 22.3 ? C79 KZB 812 A 1 HETATM 28 C C80 KZB . . . L 12 138.525 138.966 162.72 1 22.3 ? C80 KZB 812 A 1 HETATM 29 C C81 KZB . . . L 12 139.016 138 164.988 1 22.3 ? C81 KZB 812 A 1 HETATM 30 C C82 KZB . . . L 12 137.971 138.802 165.748 1 22.3 ? C82 KZB 812 A 1 HETATM 31 C C83 KZB . . . L 12 138.471 139.272 167.109 1 22.3 ? C83 KZB 812 A 1 HETATM 32 C C84 KZB . . . L 12 139.75 140.089 166.893 1 22.3 ? C84 KZB 812 A 1 HETATM 33 C C85 KZB . . . L 12 139.48 141.274 165.97 1 22.3 ? C85 KZB 812 A 1 HETATM 34 O O05 KZB . . . L 12 142.536 141.522 168.541 1 22.3 ? O05 KZB 812 A 1 HETATM 35 O O12 KZB . . . L 12 141.925 142.147 170.721 1 22.3 ? O12 KZB 812 A 1 HETATM 36 O O14 KZB . . . L 12 142.709 140.268 165.318 1 22.3 ? O14 KZB 812 A 1 HETATM 37 O O22 KZB . . . L 12 137.146 135.24 160.387 1 22.3 ? O22 KZB 812 A 1 HETATM 38 O O24 KZB . . . L 12 135.225 134.764 159.135 1 22.3 ? O24 KZB 812 A 1 HETATM 39 O O27 KZB . . . L 12 132.23 133.586 157.478 1 22.3 ? O27 KZB 812 A 1 HETATM 40 O O29 KZB . . . L 12 132.803 132.022 159.188 1 22.3 ? O29 KZB 812 A 1 HETATM 41 O O73 KZB . . . L 12 135.16 130.791 160.291 1 22.3 ? O73 KZB 812 A 1 HETATM 42 O O75 KZB . . . L 12 137.011 132.57 161.475 1 22.3 ? O75 KZB 812 A 1 HETATM 43 O O77 KZB . . . L 12 135.276 136.376 162.4 1 22.3 ? O77 KZB 812 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #