data_6S7O # _model_server_result.job_id zpEVerbO5lkOQlDps9ajwQ _model_server_result.datetime_utc '2024-11-05 00:11:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":818}' # _entry.id 6S7O # _exptl.entry_id 6S7O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 508.713 _entity.id 15 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '[(3~{R},6~{Z},10~{Z},14~{Z},18~{Z})-3,7,11,15,19,23-hexamethyltetracosa-6,10,14,18,22-pentaenyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S7O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 9 oligosaccharide 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 9 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 9 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 10 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 10 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 10 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 10 6 5 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 10 7 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 10 8 7 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 11 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 11 4 3 MAN BMA C1 O1 . O3 HO3 . sing 13 ? 11 5 4 MAN MAN C1 O1 . O2 HO2 . sing 14 ? 11 6 3 MAN BMA C1 O1 . O6 HO6 . sing 15 ? 11 7 6 MAN MAN C1 O1 . O3 HO3 . sing 16 ? 11 8 6 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 9 n I NAG 1 I 1 NAG A 715 NAG 9 n I NAG 2 I 2 NAG A 716 NAG 9 n I BMA 3 I 3 BMA A 717 BMA 10 n J NAG 1 J 1 NAG A 718 NAG 10 n J NAG 2 J 2 NAG A 719 NAG 10 n J BMA 3 J 3 BMA A 720 BMA 10 n J MAN 4 J 4 MAN A 721 MAN 10 n J MAN 5 J 5 MAN A 722 MAN 10 n J MAN 6 J 6 MAN A 724 MAN 10 n J MAN 7 J 7 MAN A 723 MAN 10 n J MAN 8 J 8 MAN A 725 MAN 11 n K NAG 1 K 1 NAG E 595 NAG 11 n K NAG 2 K 2 NAG E 596 NAG 11 n K BMA 3 K 3 BMA E 597 BMA 11 n K MAN 4 K 4 MAN E 598 MAN 11 n K MAN 5 K 5 MAN E 602 MAN 11 n K MAN 6 K 6 MAN E 599 MAN 11 n K MAN 7 K 7 MAN E 600 MAN 11 n K MAN 8 K 8 MAN E 601 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 548 A ASN 548 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 O C2D EGY . A EGY 815 1_555 S C3B EGY . C EGY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale3 E ND2 ASN 299 E ASN 299 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale5 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale6 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale7 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale8 J O3 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale9 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 J O2 MAN . J MAN 4 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 J O2 MAN . J MAN 5 1_555 J C1 MAN . J MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale12 J O6 MAN . J MAN 7 1_555 J C1 MAN . J MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale13 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale15 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale16 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale17 K O2 MAN . K MAN 4 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale18 K O3 MAN . K MAN 6 1_555 K C1 MAN . K MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale19 K O6 MAN . K MAN 6 1_555 K C1 MAN . K MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? metalc ? metalc1 E OE2 GLU 438 E GLU 438 1_555 Y MG MG . E MG 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C30 H53 O4 P' _chem_comp.formula_weight 508.713 _chem_comp.id KZE _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{R},6~{Z},10~{Z},14~{Z},18~{Z})-3,7,11,15,19,23-hexamethyltetracosa-6,10,14,18,22-pentaenyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S7O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 KZB A 1 812 802 KZB LIG . M 12 KZB A 1 813 803 KZB LIG . N 12 KZB A 1 814 805 KZB LIG . O 13 EGY A 1 815 3 EGY EGY . P 13 EGY A 1 816 7 EGY EGY . Q 14 MG A 1 817 901 MG MG . R 15 KZE A 1 818 801 KZE DP . S 13 EGY C 1 101 4 EGY EGY . T 13 EGY C 1 102 6 EGY EGY . U 13 EGY D 1 701 701 EGY EGY . V 12 KZB E 1 709 804 KZB LIG . W 12 KZB E 1 710 806 KZB LIG . X 13 EGY E 1 711 5 EGY EGY . Y 14 MG E 1 712 902 MG MG . Z 12 KZB F 1 701 808 KZB LIG . AA 12 KZB F 1 702 809 KZB LIG . BA 12 KZB F 1 703 810 KZB LIG . CA 13 EGY F 1 704 1 EGY EGY . DA 12 KZB G 1 501 807 KZB LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C06 KZE . . . R 15 163.675 148.952 161.926 1 38.14 ? C06 KZE 818 A 1 HETATM 2 C C07 KZE . . . R 15 163.078 148.206 163.124 1 38.14 ? C07 KZE 818 A 1 HETATM 3 C C08 KZE . . . R 15 162.714 150.066 161.521 1 38.14 ? C08 KZE 818 A 1 HETATM 4 C C09 KZE . . . R 15 163.114 149.1 164.41 1 38.14 ? C09 KZE 818 A 1 HETATM 5 C C10 KZE . . . R 15 163.825 147.964 160.784 1 38.14 ? C10 KZE 818 A 1 HETATM 6 C C11 KZE . . . R 15 163.452 151.072 160.616 1 38.14 ? C11 KZE 818 A 1 HETATM 7 C C12 KZE . . . R 15 164.287 148.688 165.32 1 38.14 ? C12 KZE 818 A 1 HETATM 8 C C13 KZE . . . R 15 164.227 147.574 166.095 1 38.14 ? C13 KZE 818 A 1 HETATM 9 C C14 KZE . . . R 15 162.956 146.675 166.083 1 38.14 ? C14 KZE 818 A 1 HETATM 10 C C15 KZE . . . R 15 163.285 145.191 166.423 1 38.14 ? C15 KZE 818 A 1 HETATM 11 C C16 KZE . . . R 15 165.41 147.204 166.985 1 38.14 ? C16 KZE 818 A 1 HETATM 12 C C17 KZE . . . R 15 162.335 144.33 165.565 1 38.14 ? C17 KZE 818 A 1 HETATM 13 C C18 KZE . . . R 15 161.817 143.176 166.045 1 38.14 ? C18 KZE 818 A 1 HETATM 14 C C19 KZE . . . R 15 162.165 142.675 167.46 1 38.14 ? C19 KZE 818 A 1 HETATM 15 C C20 KZE . . . R 15 160.949 142.861 168.429 1 38.14 ? C20 KZE 818 A 1 HETATM 16 C C21 KZE . . . R 15 161.431 143.441 169.773 1 38.14 ? C21 KZE 818 A 1 HETATM 17 C C22 KZE . . . R 15 161.834 142.611 170.786 1 38.14 ? C22 KZE 818 A 1 HETATM 18 C C23 KZE . . . R 15 160.886 142.356 165.169 1 38.14 ? C23 KZE 818 A 1 HETATM 19 C C24 KZE . . . R 15 161.837 141.085 170.594 1 38.14 ? C24 KZE 818 A 1 HETATM 20 C C25 KZE . . . R 15 160.599 140.437 171.325 1 38.14 ? C25 KZE 818 A 1 HETATM 21 C C26 KZE . . . R 15 162.288 143.191 172.096 1 38.14 ? C26 KZE 818 A 1 HETATM 22 C C27 KZE . . . R 15 160.072 139.269 170.463 1 38.14 ? C27 KZE 818 A 1 HETATM 23 C C28 KZE . . . R 15 160.614 138.023 170.579 1 38.14 ? C28 KZE 818 A 1 HETATM 24 C C29 KZE . . . R 15 161.767 137.748 171.587 1 38.14 ? C29 KZE 818 A 1 HETATM 25 C C30 KZE . . . R 15 160.081 136.882 169.715 1 38.14 ? C30 KZE 818 A 1 HETATM 26 O O02 KZE . . . R 15 163.279 150.697 159.274 1 38.14 ? O02 KZE 818 A 1 HETATM 27 O O03 KZE . . . R 15 162.137 152.972 158.965 1 38.14 ? O03 KZE 818 A 1 HETATM 28 O O04 KZE . . . R 15 163.561 152.116 157.002 1 38.14 ? O04 KZE 818 A 1 HETATM 29 O O05 KZE . . . R 15 161.275 151.25 157.786 1 38.14 ? O05 KZE 818 A 1 HETATM 30 P P01 KZE . . . R 15 162.556 151.762 158.256 1 38.14 ? P01 KZE 818 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #