data_6S7R
#
_model_server_result.job_id            -DFReNxn5XBUjPUJ1Wc7Ug 
_model_server_result.datetime_utc      '2024-11-08 15:34:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s7r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":601}' 
#
_entry.id    6S7R 
#
_exptl.entry_id    6S7R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.42 
_cell.angle_beta          97.1 
_cell.angle_gamma         110.27 
_cell.entry_id            6S7R 
_cell.length_a            92.967 
_cell.length_b            97.874 
_cell.length_c            144.561 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S7R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? octameric 8 author_defined_assembly 1 
? octameric 8 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,Q,R,S,T,U,V,W,X 1 1 
I,J,K,L,M,N,O,P,Y,Z,AA,BA,CA,DA,EA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6S7R 
_atom_sites.fract_transf_matrix[1][1]    0.010757 
_atom_sites.fract_transf_matrix[1][2]    0.003973 
_atom_sites.fract_transf_matrix[1][3]    0.001556 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010892 
_atom_sites.fract_transf_matrix[2][3]    0.000589 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 ADP A 1 601 601 ADP ADP . 
R 2 ADP B 1 601 601 ADP ADP . 
S 2 ADP C 1 601 601 ADP ADP . 
T 2 ADP D 1 601 601 ADP ADP . 
U 2 ADP E 1 601 601 ADP ADP . 
V 2 ADP F 1 601 601 ADP ADP . 
W 2 ADP G 1 601 601 ADP ADP . 
X 2 ADP H 1 601 601 ADP ADP . 
Y 2 ADP I 1 601 601 ADP ADP . 
Z 2 ADP J 1 601 601 ADP ADP . 
AA 2 ADP K 1 601 601 ADP ADP . 
BA 2 ADP L 1 601 601 ADP ADP . 
CA 2 ADP M 1 601 601 ADP ADP . 
DA 2 ADP N 1 601 601 ADP ADP . 
EA 2 ADP O 1 601 601 ADP ADP . 
FA 2 ADP P 1 601 601 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . BA 2 -36.301 -19.903 -64.649 1 257.15 ? PB ADP 601 L 1 
HETATM 2 O O1B ADP . . . BA 2 -35.727 -19.439 -65.967 1 257.06 ? O1B ADP 601 L 1 
HETATM 3 O O2B ADP . . . BA 2 -37.808 -19.995 -64.631 1 258.79 ? O2B ADP 601 L 1 
HETATM 4 O O3B ADP . . . BA 2 -35.597 -21.101 -64.059 1 256.5 ? O3B ADP 601 L 1 
HETATM 5 P PA ADP . . . BA 2 -34.453 -18.153 -63.484 1 254.62 ? PA ADP 601 L 1 
HETATM 6 O O1A ADP . . . BA 2 -34.051 -17.519 -64.794 1 254.59 ? O1A ADP 601 L 1 
HETATM 7 O O2A ADP . . . BA 2 -33.59 -19.24 -62.895 1 254 ? O2A ADP 601 L 1 
HETATM 8 O O3A ADP . . . BA 2 -35.96 -18.705 -63.625 1 256.26 ? O3A ADP 601 L 1 
HETATM 9 O O5' ADP . . . BA 2 -34.559 -16.978 -62.391 1 253.73 ? O5' ADP 601 L 1 
HETATM 10 C C5' ADP . . . BA 2 -33.384 -16.222 -62.109 1 252.36 ? C5' ADP 601 L 1 
HETATM 11 C C4' ADP . . . BA 2 -33.695 -15.06 -61.179 1 251.51 ? C4' ADP 601 L 1 
HETATM 12 O O4' ADP . . . BA 2 -33.746 -15.496 -59.818 1 251.43 ? O4' ADP 601 L 1 
HETATM 13 C C3' ADP . . . BA 2 -32.604 -14.004 -61.257 1 250.08 ? C3' ADP 601 L 1 
HETATM 14 O O3' ADP . . . BA 2 -33.082 -12.85 -61.954 1 249.9 ? O3' ADP 601 L 1 
HETATM 15 C C2' ADP . . . BA 2 -32.275 -13.646 -59.822 1 249.27 ? C2' ADP 601 L 1 
HETATM 16 O O2' ADP . . . BA 2 -32.491 -12.253 -59.595 1 248.58 ? O2' ADP 601 L 1 
HETATM 17 C C1' ADP . . . BA 2 -33.242 -14.456 -58.975 1 250.28 ? C1' ADP 601 L 1 
HETATM 18 N N9 ADP . . . BA 2 -32.548 -14.982 -57.771 1 249.8 ? N9 ADP 601 L 1 
HETATM 19 C C8 ADP . . . BA 2 -31.98 -16.194 -57.634 1 249.96 ? C8 ADP 601 L 1 
HETATM 20 N N7 ADP . . . BA 2 -31.434 -16.341 -56.397 1 249.42 ? N7 ADP 601 L 1 
HETATM 21 C C5 ADP . . . BA 2 -31.654 -15.199 -55.719 1 248.88 ? C5 ADP 601 L 1 
HETATM 22 C C6 ADP . . . BA 2 -31.345 -14.679 -54.365 1 248.2 ? C6 ADP 601 L 1 
HETATM 23 N N6 ADP . . . BA 2 -30.673 -15.432 -53.462 1 247.95 ? N6 ADP 601 L 1 
HETATM 24 N N1 ADP . . . BA 2 -31.758 -13.428 -54.062 1 247.84 ? N1 ADP 601 L 1 
HETATM 25 C C2 ADP . . . BA 2 -32.427 -12.668 -54.948 1 248.1 ? C2 ADP 601 L 1 
HETATM 26 N N3 ADP . . . BA 2 -32.739 -13.075 -56.191 1 248.72 ? N3 ADP 601 L 1 
HETATM 27 C C4 ADP . . . BA 2 -32.388 -14.308 -56.629 1 249.13 ? C4 ADP 601 L 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#