data_6S7R # _model_server_result.job_id oQU6x0wumwWoCmBi2vwerg _model_server_result.datetime_utc '2024-11-08 15:40:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":601}' # _entry.id 6S7R # _exptl.entry_id 6S7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.42 _cell.angle_beta 97.1 _cell.angle_gamma 110.27 _cell.entry_id 6S7R _cell.length_a 92.967 _cell.length_b 97.874 _cell.length_c 144.561 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 ? octameric 8 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,Q,R,S,T,U,V,W,X 1 1 I,J,K,L,M,N,O,P,Y,Z,AA,BA,CA,DA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6S7R _atom_sites.fract_transf_matrix[1][1] 0.010757 _atom_sites.fract_transf_matrix[1][2] 0.003973 _atom_sites.fract_transf_matrix[1][3] 0.001556 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010892 _atom_sites.fract_transf_matrix[2][3] 0.000589 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 ADP A 1 601 601 ADP ADP . R 2 ADP B 1 601 601 ADP ADP . S 2 ADP C 1 601 601 ADP ADP . T 2 ADP D 1 601 601 ADP ADP . U 2 ADP E 1 601 601 ADP ADP . V 2 ADP F 1 601 601 ADP ADP . W 2 ADP G 1 601 601 ADP ADP . X 2 ADP H 1 601 601 ADP ADP . Y 2 ADP I 1 601 601 ADP ADP . Z 2 ADP J 1 601 601 ADP ADP . AA 2 ADP K 1 601 601 ADP ADP . BA 2 ADP L 1 601 601 ADP ADP . CA 2 ADP M 1 601 601 ADP ADP . DA 2 ADP N 1 601 601 ADP ADP . EA 2 ADP O 1 601 601 ADP ADP . FA 2 ADP P 1 601 601 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . Y 2 -17.622 -32.925 -84.362 1 163.73 ? PB ADP 601 I 1 HETATM 2 O O1B ADP . . . Y 2 -18.392 -33.343 -85.592 1 165.54 ? O1B ADP 601 I 1 HETATM 3 O O2B ADP . . . Y 2 -18.34 -33.174 -83.056 1 163.79 ? O2B ADP 601 I 1 HETATM 4 O O3B ADP . . . Y 2 -16.175 -33.356 -84.358 1 163.11 ? O3B ADP 601 I 1 HETATM 5 P PA ADP . . . Y 2 -17.002 -30.497 -83.198 1 160.66 ? PA ADP 601 I 1 HETATM 6 O O1A ADP . . . Y 2 -15.624 -31.014 -82.864 1 160.15 ? O1A ADP 601 I 1 HETATM 7 O O2A ADP . . . Y 2 -18.075 -30.48 -82.135 1 160.75 ? O2A ADP 601 I 1 HETATM 8 O O3A ADP . . . Y 2 -17.555 -31.318 -84.463 1 162.46 ? O3A ADP 601 I 1 HETATM 9 O O5' ADP . . . Y 2 -16.824 -28.988 -83.714 1 159.38 ? O5' ADP 601 I 1 HETATM 10 C C5' ADP . . . Y 2 -16.346 -28.067 -82.741 1 157.96 ? C5' ADP 601 I 1 HETATM 11 C C4' ADP . . . Y 2 -15.954 -26.743 -83.364 1 156.87 ? C4' ADP 601 I 1 HETATM 12 O O4' ADP . . . Y 2 -17.124 -25.994 -83.708 1 157.2 ? O4' ADP 601 I 1 HETATM 13 C C3' ADP . . . Y 2 -15.177 -25.935 -82.339 1 155.75 ? C3' ADP 601 I 1 HETATM 14 O O3' ADP . . . Y 2 -13.833 -25.719 -82.775 1 155.16 ? O3' ADP 601 I 1 HETATM 15 C C2' ADP . . . Y 2 -15.919 -24.622 -82.241 1 155.55 ? C2' ADP 601 I 1 HETATM 16 O O2' ADP . . . Y 2 -15.042 -23.499 -82.317 1 155.02 ? O2' ADP 601 I 1 HETATM 17 C C1' ADP . . . Y 2 -16.893 -24.62 -83.4 1 156.27 ? C1' ADP 601 I 1 HETATM 18 N N9 ADP . . . Y 2 -18.099 -23.896 -82.941 1 156.64 ? N9 ADP 601 I 1 HETATM 19 C C8 ADP . . . Y 2 -19.231 -24.408 -82.423 1 157.13 ? C8 ADP 601 I 1 HETATM 20 N N7 ADP . . . Y 2 -20.106 -23.416 -82.108 1 157.76 ? N7 ADP 601 I 1 HETATM 21 C C5 ADP . . . Y 2 -19.521 -22.243 -82.423 1 157.65 ? C5 ADP 601 I 1 HETATM 22 C C6 ADP . . . Y 2 -19.87 -20.806 -82.355 1 158.19 ? C6 ADP 601 I 1 HETATM 23 N N6 ADP . . . Y 2 -21.06 -20.394 -81.87 1 159.12 ? N6 ADP 601 I 1 HETATM 24 N N1 ADP . . . Y 2 -18.957 -19.912 -82.791 1 157.88 ? N1 ADP 601 I 1 HETATM 25 C C2 ADP . . . Y 2 -17.766 -20.293 -83.281 1 157.28 ? C2 ADP 601 I 1 HETATM 26 N N3 ADP . . . Y 2 -17.38 -21.574 -83.37 1 156.84 ? N3 ADP 601 I 1 HETATM 27 C C4 ADP . . . Y 2 -18.199 -22.572 -82.967 1 156.97 ? C4 ADP 601 I 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #