data_6S7T # _model_server_result.job_id 80F9AvSJ3IIzJLIYsiMkYA _model_server_result.datetime_utc '2024-11-21 23:50:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":920}' # _entry.id 6S7T # _exptl.entry_id 6S7T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 16 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S7T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 V N N ? 16 HA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 11 oligosaccharide 12 oligosaccharide 13 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 12 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 12 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 12 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 12 5 4 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 12 6 5 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 12 7 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 12 8 7 MAN MAN C1 O1 . O6 HO6 . sing 9 ? 13 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 13 3 2 BMA NAG C1 O1 . O4 HO4 . sing 11 ? 13 4 3 MAN BMA C1 O1 . O3 HO3 . sing 12 ? 13 5 4 MAN MAN C1 O1 . O2 HO2 . sing 13 ? 13 6 3 MAN BMA C1 O1 . O6 HO6 . sing 14 ? 13 7 6 MAN MAN C1 O1 . O3 HO3 . sing 15 ? 13 8 6 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 11 n K NAG 1 J 1 NAG A 901 NAG 11 n K NAG 2 J 2 NAG A 902 NAG 12 n L NAG 1 L 1 NAG A 904 NAG 12 n L NAG 2 L 2 NAG A 905 NAG 12 n L BMA 3 L 3 BMA A 906 BMA 12 n L MAN 4 L 4 MAN A 907 MAN 12 n L MAN 5 L 5 MAN A 908 MAN 12 n L MAN 6 L 6 MAN A 910 MAN 12 n L MAN 7 L 7 MAN A 909 MAN 12 n L MAN 8 L 8 MAN A 911 MAN 11 n M NAG 1 M 1 NAG A 988 NAG 11 n M NAG 2 M 2 NAG A 989 NAG 13 n N NAG 1 N 1 NAG N 595 NAG 13 n N NAG 2 N 2 NAG N 596 NAG 13 n N BMA 3 N 3 BMA N 597 BMA 13 n N MAN 4 N 4 MAN N 598 MAN 13 n N MAN 5 N 5 MAN N 602 MAN 13 n N MAN 6 N 6 MAN N 599 MAN 13 n N MAN 7 N 7 MAN N 600 MAN 13 n N MAN 8 N 8 MAN N 601 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 616 A ASN 616 1_555 K C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 627 A ASN 627 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 641 A ASN 641 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 E ND2 ASN 299 E ASN 299 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 K O4 NAG . J NAG 1 1_555 K C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale6 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale7 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale8 L O3 BMA . L BMA 3 1_555 L C1 MAN . L MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale9 L O6 BMA . L BMA 3 1_555 L C1 MAN . L MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 L O2 MAN . L MAN 4 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale11 L O2 MAN . L MAN 5 1_555 L C1 MAN . L MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale12 L O6 MAN . L MAN 7 1_555 L C1 MAN . L MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale13 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale15 N O4 NAG . N NAG 2 1_555 N C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale16 N O3 BMA . N BMA 3 1_555 N C1 MAN . N MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale17 N O6 BMA . N BMA 3 1_555 N C1 MAN . N MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale18 N O2 MAN . N MAN 4 1_555 N C1 MAN . N MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale19 N O3 MAN . N MAN 6 1_555 N C1 MAN . N MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale20 N O6 MAN . N MAN 6 1_555 N C1 MAN . N MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? metalc ? metalc1 E OE2 GLU 376 E GLU 376 1_555 HA MG MG . E MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc2 E OE2 GLU 438 E GLU 438 1_555 HA MG MG . E MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S7T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 14 EGY A 1 913 3 EGY EGY . P 14 EGY A 1 914 5 EGY EGY . Q 14 EGY A 1 915 7 EGY EGY . R 14 EGY A 1 916 8 EGY EGY . S 14 EGY A 1 917 9 EGY EGY . T 14 EGY A 1 918 10 EGY EGY . U 15 KZB A 1 919 107 KZB LIG . V 16 MG A 1 920 1 MG MG . W 17 0K3 A 1 921 1101 0K3 DP . X 14 EGY C 1 101 2 EGY EGY . Y 15 KZB C 1 102 105 KZB LIG . Z 15 KZB C 1 103 114 KZB LIG . AA 14 EGY D 1 201 6 EGY EGY . BA 15 KZB D 1 202 106 KZB LIG . CA 15 KZB D 1 203 108 KZB LIG . DA 15 KZB D 1 204 112 KZB LIG . EA 14 EGY E 1 701 4 EGY EGY . FA 15 KZB E 1 702 101 KZB LIG . GA 15 KZB E 1 703 102 KZB LIG . HA 16 MG E 1 704 2 MG MG . IA 14 EGY F 1 701 1 EGY EGY . JA 15 KZB F 1 702 104 KZB LIG . KA 15 KZB F 1 703 110 KZB LIG . LA 15 KZB F 1 704 113 KZB LIG . MA 15 KZB G 1 501 103 KZB LIG . NA 15 KZB G 1 502 109 KZB LIG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 16 _atom_site.Cartn_x 164.361 _atom_site.Cartn_y 155.332 _atom_site.Cartn_z 157.135 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 920 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #