data_6S8F
#
_model_server_result.job_id            B0KsPdKIVbfJTNkaJVMMfQ 
_model_server_result.datetime_utc      '2025-04-18 20:49:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2801}' 
#
_entry.id    6S8F 
#
_exptl.entry_id    6S8F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6S8F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 2618 F ASN 2617 1_555 D MG MG . F MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 C O1G ANP . F ANP 2801 1_555 D MG MG . F MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc3 C O2G ANP . F ANP 2801 1_555 D MG MG . F MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc4 C O1A ANP . F ANP 2801 1_555 D MG MG . F MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc5 B OD1 ASN 2618 H ASN 2617 1_555 F MG MG . H MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc6 E O1G ANP . H ANP 2801 1_555 F MG MG . H MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc7 E O2G ANP . H ANP 2801 1_555 F MG MG . H MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc8 E O1A ANP . H ANP 2801 1_555 F MG MG . H MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     6S8F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP F 1 2801 3000 ANP ANP . 
D 3 MG F 1 2802 3101 MG MG . 
E 2 ANP H 1 2801 3000 ANP ANP . 
F 3 MG H 1 2802 3101 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 2 223.839 173.867 272.796 1 79.6 ? PG ANP 2801 F 1 
HETATM 2 O O1G ANP . . . C 2 224.135 174.507 271.482 1 79.6 ? O1G ANP 2801 F 1 
HETATM 3 O O2G ANP . . . C 2 222.461 174.404 273.338 1 79.6 ? O2G ANP 2801 F 1 
HETATM 4 O O3G ANP . . . C 2 224.984 174.201 273.832 1 79.6 ? O3G ANP 2801 F 1 
HETATM 5 P PB ANP . . . C 2 223.185 171.571 274.055 1 79.6 ? PB ANP 2801 F 1 
HETATM 6 O O1B ANP . . . C 2 223.054 172.691 275.032 1 79.6 ? O1B ANP 2801 F 1 
HETATM 7 O O2B ANP . . . C 2 224.175 170.487 274.574 1 79.6 ? O2B ANP 2801 F 1 
HETATM 8 N N3B ANP . . . C 2 223.724 172.196 272.6 1 79.6 ? N3B ANP 2801 F 1 
HETATM 9 P PA ANP . . . C 2 221.054 171.241 272.475 1 79.6 ? PA ANP 2801 F 1 
HETATM 10 O O1A ANP . . . C 2 220.849 172.695 272.286 1 79.6 ? O1A ANP 2801 F 1 
HETATM 11 O O2A ANP . . . C 2 219.774 170.405 272.479 1 79.6 ? O2A ANP 2801 F 1 
HETATM 12 O O3A ANP . . . C 2 221.784 170.938 273.837 1 79.6 ? O3A ANP 2801 F 1 
HETATM 13 O O5' ANP . . . C 2 222.059 170.729 271.377 1 79.6 ? O5' ANP 2801 F 1 
HETATM 14 C C5' ANP . . . C 2 222.376 169.329 271.279 1 79.6 ? C5' ANP 2801 F 1 
HETATM 15 C C4' ANP . . . C 2 222.667 168.99 269.841 1 79.6 ? C4' ANP 2801 F 1 
HETATM 16 O O4' ANP . . . C 2 221.676 168.062 269.361 1 79.6 ? O4' ANP 2801 F 1 
HETATM 17 C C3' ANP . . . C 2 222.613 170.161 268.869 1 79.6 ? C3' ANP 2801 F 1 
HETATM 18 O O3' ANP . . . C 2 223.874 170.813 268.801 1 79.6 ? O3' ANP 2801 F 1 
HETATM 19 C C2' ANP . . . C 2 222.278 169.473 267.549 1 79.6 ? C2' ANP 2801 F 1 
HETATM 20 O O2' ANP . . . C 2 223.455 168.93 266.972 1 79.6 ? O2' ANP 2801 F 1 
HETATM 21 C C1' ANP . . . C 2 221.375 168.326 268.004 1 79.6 ? C1' ANP 2801 F 1 
HETATM 22 N N9 ANP . . . C 2 219.95 168.603 267.902 1 79.6 ? N9 ANP 2801 F 1 
HETATM 23 C C8 ANP . . . C 2 219.12 169.072 268.885 1 79.6 ? C8 ANP 2801 F 1 
HETATM 24 N N7 ANP . . . C 2 217.871 169.213 268.51 1 79.6 ? N7 ANP 2801 F 1 
HETATM 25 C C5 ANP . . . C 2 217.882 168.801 267.187 1 79.6 ? C5 ANP 2801 F 1 
HETATM 26 C C6 ANP . . . C 2 216.866 168.711 266.217 1 79.6 ? C6 ANP 2801 F 1 
HETATM 27 N N6 ANP . . . C 2 215.593 169.043 266.44 1 79.6 ? N6 ANP 2801 F 1 
HETATM 28 N N1 ANP . . . C 2 217.21 168.262 264.99 1 79.6 ? N1 ANP 2801 F 1 
HETATM 29 C C2 ANP . . . C 2 218.483 167.935 264.757 1 79.6 ? C2 ANP 2801 F 1 
HETATM 30 N N3 ANP . . . C 2 219.523 167.973 265.594 1 79.6 ? N3 ANP 2801 F 1 
HETATM 31 C C4 ANP . . . C 2 219.152 168.422 266.799 1 79.6 ? C4 ANP 2801 F 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#