data_6S8G # _model_server_result.job_id f6KOkIZ2eboCjrTdIF2mRw _model_server_result.datetime_utc '2025-01-25 08:37:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6S8G # _exptl.entry_id 6S8G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S8G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6S8G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ANP A 1 401 401 ANP ANP . F 4 ANP B 1 401 401 ANP ANP . G 5 LMD F 1 501 501 LMD LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 4 61.172 67.695 97.928 1 37.08 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . E 4 60.624 68.589 98.984 1 37.08 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . E 4 61.722 68.524 96.712 1 37.08 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . E 4 60.054 66.731 97.393 1 37.08 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . E 4 62.945 66.016 97.139 1 37.08 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . E 4 61.761 65.448 96.46 1 37.08 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . E 4 63.555 67.129 96.257 1 37.08 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . E 4 62.415 66.745 98.532 1 37.08 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . E 4 65.462 65.156 96.871 1 37.08 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . E 4 65.789 66.58 96.709 1 37.08 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . E 4 65.609 64.405 95.554 1 37.08 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . E 4 64.005 64.92 97.393 1 37.08 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . E 4 66.336 64.502 97.982 1 37.08 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . E 4 65.802 63.35 98.63 1 37.08 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . E 4 66.692 62.95 99.771 1 37.08 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . E 4 68.047 62.824 99.298 1 37.08 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . E 4 66.725 63.917 100.952 1 37.08 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . E 4 66.658 63.205 102.179 1 37.08 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . E 4 68.071 64.624 100.798 1 37.08 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . E 4 68.614 64.947 102.069 1 37.08 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . E 4 68.918 63.545 100.138 1 37.08 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . E 4 69.995 64.068 99.314 1 37.08 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . E 4 69.876 64.752 98.138 1 37.08 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . E 4 71.021 65.098 97.598 1 37.08 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . E 4 71.953 64.598 98.486 1 37.08 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . E 4 73.365 64.63 98.493 1 37.08 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . E 4 74.097 65.21 97.541 1 37.08 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . E 4 74 64.038 99.527 1 37.08 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . E 4 73.272 63.456 100.482 1 37.08 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . E 4 71.943 63.364 100.582 1 37.08 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . E 4 71.347 63.958 99.549 1 37.08 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #