data_6S8M
#
_model_server_result.job_id            vRfRyfTXcZV-XJR3VqKcZw 
_model_server_result.datetime_utc      '2025-03-06 00:48:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s8m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":502}' 
#
_entry.id    6S8M 
#
_exptl.entry_id    6S8M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.683 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6S8M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S8M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B ND2 ASN 226 B ASN 226 1_555 F O6 GDP . B GDP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
metalc ? metalc1 A N THR 172 K THR 199 1_555 D MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc2 A OG1 THR 172 K THR 199 1_555 D MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc3 D MG MG . K MG 501 1_555 E O2B ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc4 D MG MG . K MG 501 1_555 E O1G ANP . K ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
#
_chem_comp.formula           'C27 H41 N O6 S' 
_chem_comp.formula_weight    507.683 
_chem_comp.id                EPB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'EPOTHILONE B' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O16 C16 EPB doub 133 n n 
C51 C5 EPB sing 134 n n 
C51 H511 EPB sing 135 n n 
C51 H512 EPB sing 136 n n 
C51 H513 EPB sing 137 n n 
O41 C5 EPB sing 138 n n 
O41 C4 EPB sing 139 n n 
C5 C4 EPB sing 140 n n 
C5 C6 EPB sing 141 n n 
C4 C3 EPB sing 142 n n 
C4 H4 EPB sing 143 n n 
C16 O1 EPB sing 144 n n 
C16 C15 EPB sing 145 n n 
O1 C2 EPB sing 146 n n 
C2 C3 EPB sing 147 n n 
C2 C20 EPB sing 148 n n 
C2 H3 EPB sing 149 n n 
C3 H31 EPB sing 150 n n 
C3 H32 EPB sing 151 n n 
C20 C21 EPB sing 152 n n 
C20 C22 EPB doub 153 e n 
C21 H211 EPB sing 154 n n 
C21 H212 EPB sing 155 n n 
C21 H213 EPB sing 156 n n 
C22 C23 EPB sing 157 n n 
C22 H22 EPB sing 158 n n 
C23 N26 EPB sing 159 n y 
C23 C24 EPB doub 160 n y 
N26 C25 EPB doub 161 n y 
C25 C27 EPB sing 162 n n 
C25 S1 EPB sing 163 n y 
C27 H271 EPB sing 164 n n 
C27 H272 EPB sing 165 n n 
C27 H273 EPB sing 166 n n 
C24 S1 EPB sing 167 n y 
C24 H24 EPB sing 168 n n 
C15 C14 EPB sing 169 n n 
C15 H151 EPB sing 170 n n 
C15 H152 EPB sing 171 n n 
C14 O14 EPB sing 172 n n 
C14 C13 EPB sing 173 n n 
C14 H14 EPB sing 174 n n 
O14 H2 EPB sing 175 n n 
C13 C29 EPB sing 176 n n 
C13 C30 EPB sing 177 n n 
C13 C12 EPB sing 178 n n 
C29 H291 EPB sing 179 n n 
C29 H292 EPB sing 180 n n 
C29 H293 EPB sing 181 n n 
C30 H301 EPB sing 182 n n 
C30 H302 EPB sing 183 n n 
C30 H303 EPB sing 184 n n 
C12 O12 EPB doub 185 n n 
C12 C11 EPB sing 186 n n 
C11 C28 EPB sing 187 n n 
C11 C10 EPB sing 188 n n 
C11 H11 EPB sing 189 n n 
C28 H281 EPB sing 190 n n 
C28 H282 EPB sing 191 n n 
C28 H283 EPB sing 192 n n 
C10 O10 EPB sing 193 n n 
C10 C9 EPB sing 194 n n 
C10 H1 EPB sing 195 n n 
O10 H10 EPB sing 196 n n 
C9 C91 EPB sing 197 n n 
C9 C8 EPB sing 198 n n 
C9 H9 EPB sing 199 n n 
C91 H911 EPB sing 200 n n 
C91 H912 EPB sing 201 n n 
C91 H913 EPB sing 202 n n 
C8 C7 EPB sing 203 n n 
C8 H81 EPB sing 204 n n 
C8 H82 EPB sing 205 n n 
C7 C6 EPB sing 206 n n 
C7 H71 EPB sing 207 n n 
C7 H72 EPB sing 208 n n 
C6 H61 EPB sing 209 n n 
C6 H62 EPB sing 210 n n 
#
_atom_sites.entry_id                     6S8M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG K 1 501 1218 MG MG . 
E 5 ANP K 1 502 1219 ANP ANP . 
F 6 GDP B 1 501 500 GDP GDP . 
G 7 EPB B 1 502 601 EPB EPB . 
H 8 GTP A 1 500 500 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O16 EPB . . . G 7 58.406 89.87 164.782 1 20 ? O16 EPB 502 B 1 
HETATM 2 C C51 EPB . . . G 7 61.847 91.669 161.71 1 20 ? C51 EPB 502 B 1 
HETATM 3 O O41 EPB . . . G 7 60.208 90.018 160.96 1 20 ? O41 EPB 502 B 1 
HETATM 4 C C5 EPB . . . G 7 60.661 90.784 162.075 1 20 ? C5 EPB 502 B 1 
HETATM 5 C C4 EPB . . . G 7 59.311 91.036 161.406 1 20 ? C4 EPB 502 B 1 
HETATM 6 C C16 EPB . . . G 7 57.393 90.501 164.987 1 20 ? C16 EPB 502 B 1 
HETATM 7 O O1 EPB . . . G 7 56.533 90.822 163.866 1 20 ? O1 EPB 502 B 1 
HETATM 8 C C2 EPB . . . G 7 57.226 91.383 162.752 1 20 ? C2 EPB 502 B 1 
HETATM 9 C C3 EPB . . . G 7 58.162 90.356 162.135 1 20 ? C3 EPB 502 B 1 
HETATM 10 C C20 EPB . . . G 7 56.222 91.79 161.719 1 20 ? C20 EPB 502 B 1 
HETATM 11 C C21 EPB . . . G 7 54.753 91.686 162.026 1 20 ? C21 EPB 502 B 1 
HETATM 12 C C22 EPB . . . G 7 56.644 92.238 160.528 1 20 ? C22 EPB 502 B 1 
HETATM 13 C C23 EPB . . . G 7 55.659 92.655 159.501 1 20 ? C23 EPB 502 B 1 
HETATM 14 N N26 EPB . . . G 7 54.535 91.924 159.316 1 20 ? N26 EPB 502 B 1 
HETATM 15 C C25 EPB . . . G 7 53.786 92.5 158.35 1 20 ? C25 EPB 502 B 1 
HETATM 16 C C27 EPB . . . G 7 52.466 92.138 157.723 1 20 ? C27 EPB 502 B 1 
HETATM 17 C C24 EPB . . . G 7 55.88 93.806 158.76 1 20 ? C24 EPB 502 B 1 
HETATM 18 S S1 EPB . . . G 7 54.503 93.945 157.711 1 20 ? S1 EPB 502 B 1 
HETATM 19 C C15 EPB . . . G 7 57.038 90.918 166.389 1 20 ? C15 EPB 502 B 1 
HETATM 20 C C14 EPB . . . G 7 57.193 89.689 167.269 1 20 ? C14 EPB 502 B 1 
HETATM 21 O O14 EPB . . . G 7 56.008 88.909 167.095 1 20 ? O14 EPB 502 B 1 
HETATM 22 C C13 EPB . . . G 7 57.378 90.006 168.747 1 20 ? C13 EPB 502 B 1 
HETATM 23 C C29 EPB . . . G 7 56.447 91.127 169.174 1 20 ? C29 EPB 502 B 1 
HETATM 24 C C30 EPB . . . G 7 57.062 88.769 169.58 1 20 ? C30 EPB 502 B 1 
HETATM 25 C C12 EPB . . . G 7 58.815 90.421 168.988 1 20 ? C12 EPB 502 B 1 
HETATM 26 O O12 EPB . . . G 7 59.498 89.901 169.851 1 20 ? O12 EPB 502 B 1 
HETATM 27 C C11 EPB . . . G 7 59.458 91.488 168.162 1 20 ? C11 EPB 502 B 1 
HETATM 28 C C28 EPB . . . G 7 58.541 92.699 168.036 1 20 ? C28 EPB 502 B 1 
HETATM 29 C C10 EPB . . . G 7 59.857 90.86 166.835 1 20 ? C10 EPB 502 B 1 
HETATM 30 O O10 EPB . . . G 7 59.653 91.773 165.755 1 20 ? O10 EPB 502 B 1 
HETATM 31 C C9 EPB . . . G 7 61.313 90.431 166.892 1 20 ? C9 EPB 502 B 1 
HETATM 32 C C91 EPB . . . G 7 61.503 89.498 168.081 1 20 ? C91 EPB 502 B 1 
HETATM 33 C C8 EPB . . . G 7 61.792 89.757 165.61 1 20 ? C8 EPB 502 B 1 
HETATM 34 C C7 EPB . . . G 7 61.675 90.635 164.37 1 20 ? C7 EPB 502 B 1 
HETATM 35 C C6 EPB . . . G 7 60.71 90.001 163.375 1 20 ? C6 EPB 502 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#