data_6S8N # _model_server_result.job_id osZ6FgGnhQ551dtzumtbCQ _model_server_result.datetime_utc '2025-03-06 09:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":404}' # _entry.id 6S8N # _exptl.entry_id 6S8N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 322.439 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S8N _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 L N N # _chem_comp.formula 'C19 H30 O4' _chem_comp.formula_weight 322.439 _chem_comp.id DCQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms decylubiquinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 DCQ doub 83 n n C2 C3 DCQ sing 84 n n C2 C1 DCQ sing 85 n n C3 O3 DCQ sing 86 n n C3 C4 DCQ doub 87 n n O3 C3M DCQ sing 88 n n C4 O4 DCQ sing 89 n n C4 C5 DCQ sing 90 n n O4 C4M DCQ sing 91 n n C5 O5 DCQ doub 92 n n C5 C6 DCQ sing 93 n n C1 C1M DCQ sing 94 n n C1 C6 DCQ doub 95 n n C6 C7 DCQ sing 96 n n C7 C8 DCQ sing 97 n n C8 C9 DCQ sing 98 n n C9 C10 DCQ sing 99 n n C10 C11 DCQ sing 100 n n C11 C12 DCQ sing 101 n n C12 C13 DCQ sing 102 n n C13 C14 DCQ sing 103 n n C14 C15 DCQ sing 104 n n C15 C16 DCQ sing 105 n n C3M H3M DCQ sing 106 n n C3M H3MA DCQ sing 107 n n C3M H3MB DCQ sing 108 n n C4M H4M DCQ sing 109 n n C4M H4MA DCQ sing 110 n n C4M H4MB DCQ sing 111 n n C1M H1M DCQ sing 112 n n C1M H1MA DCQ sing 113 n n C1M H1MB DCQ sing 114 n n C7 H7 DCQ sing 115 n n C7 H7A DCQ sing 116 n n C8 H8 DCQ sing 117 n n C8 H8A DCQ sing 118 n n C9 H9 DCQ sing 119 n n C9 H9A DCQ sing 120 n n C10 H10 DCQ sing 121 n n C10 H10A DCQ sing 122 n n C11 H11 DCQ sing 123 n n C11 H11A DCQ sing 124 n n C12 H12 DCQ sing 125 n n C12 H12A DCQ sing 126 n n C13 H13 DCQ sing 127 n n C13 H13A DCQ sing 128 n n C14 H14 DCQ sing 129 n n C14 H14A DCQ sing 130 n n C15 H15 DCQ sing 131 n n C15 H15A DCQ sing 132 n n C16 H16 DCQ sing 133 n n C16 H16A DCQ sing 134 n n C16 H16B DCQ sing 135 n n # _atom_sites.entry_id 6S8N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 DCQ B 1 301 502 DCQ DCQ . G 6 LMN F 1 401 402 LMN LMN . H 7 LMT F 1 402 501 LMT LMT . I 8 L0W G 1 401 401 L0W DRG . J 6 LMN G 1 402 401 LMN LMN . K 7 LMT G 1 403 503 LMT LMT . L 5 DCQ G 1 404 504 DCQ DCQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 DCQ . . . L 5 86.855 76.763 100.827 1 65.21 ? O2 DCQ 404 G 1 HETATM 2 C C2 DCQ . . . L 5 86.69 76.259 99.715 1 65.21 ? C2 DCQ 404 G 1 HETATM 3 C C3 DCQ . . . L 5 86.161 74.971 99.475 1 65.21 ? C3 DCQ 404 G 1 HETATM 4 O O3 DCQ . . . L 5 85.738 74.046 100.425 1 65.21 ? O3 DCQ 404 G 1 HETATM 5 C C3M DCQ . . . L 5 85.686 74.056 101.869 1 65.21 ? C3M DCQ 404 G 1 HETATM 6 C C4 DCQ . . . L 5 86.013 74.491 98.181 1 65.21 ? C4 DCQ 404 G 1 HETATM 7 O O4 DCQ . . . L 5 85.479 73.204 98.167 1 65.21 ? O4 DCQ 404 G 1 HETATM 8 C C4M DCQ . . . L 5 85.139 72.274 97.115 1 65.21 ? C4M DCQ 404 G 1 HETATM 9 C C5 DCQ . . . L 5 86.387 75.273 97.063 1 65.21 ? C5 DCQ 404 G 1 HETATM 10 O O5 DCQ . . . L 5 86.28 74.911 95.888 1 65.21 ? O5 DCQ 404 G 1 HETATM 11 C C1 DCQ . . . L 5 87.057 77.03 98.614 1 65.21 ? C1 DCQ 404 G 1 HETATM 12 C C1M DCQ . . . L 5 87.576 78.307 98.88 1 65.21 ? C1M DCQ 404 G 1 HETATM 13 C C6 DCQ . . . L 5 86.918 76.545 97.304 1 65.21 ? C6 DCQ 404 G 1 HETATM 14 C C7 DCQ . . . L 5 87.278 77.331 96.192 1 65.21 ? C7 DCQ 404 G 1 HETATM 15 C C8 DCQ . . . L 5 88.684 77.032 95.637 1 65.21 ? C8 DCQ 404 G 1 HETATM 16 C C9 DCQ . . . L 5 88.939 77.937 94.429 1 65.21 ? C9 DCQ 404 G 1 HETATM 17 C C10 DCQ . . . L 5 90.312 77.617 93.853 1 65.21 ? C10 DCQ 404 G 1 HETATM 18 C C11 DCQ . . . L 5 90.603 78.478 92.622 1 65.21 ? C11 DCQ 404 G 1 HETATM 19 C C12 DCQ . . . L 5 91.97 78.039 92.103 1 65.21 ? C12 DCQ 404 G 1 HETATM 20 C C13 DCQ . . . L 5 92.392 78.789 90.842 1 65.21 ? C13 DCQ 404 G 1 HETATM 21 C C14 DCQ . . . L 5 93.747 78.205 90.439 1 65.21 ? C14 DCQ 404 G 1 HETATM 22 C C15 DCQ . . . L 5 94.283 78.853 89.169 1 65.21 ? C15 DCQ 404 G 1 HETATM 23 C C16 DCQ . . . L 5 95.626 78.207 88.829 1 65.21 ? C16 DCQ 404 G 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #